Wall clock time and date at job start Tue Mar 31 2020 01:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21611 * 119.99669 * 0.02562 * 7 6 5 9 9 C 1.47098 * 120.00105 * 180.02562 * 7 6 5 10 10 C 1.31566 * 119.85171 * 180.02562 * 9 7 6 11 11 C 1.51411 * 120.28871 * 179.97438 * 10 9 7 12 12 C 1.53031 * 108.57437 * 71.58938 * 11 10 9 13 13 C 1.51776 * 110.81101 * 274.28643 * 12 11 10 14 14 C 1.51781 * 113.84272 * 66.93862 * 13 12 11 15 15 C 1.51410 * 119.85606 * 359.72861 * 9 7 6 16 16 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 17 17 C 1.36941 * 119.99583 * 85.00384 * 16 3 2 18 18 H 1.07999 * 120.00378 * 359.97438 * 17 16 3 19 19 C 1.38814 * 119.99657 * 179.97438 * 17 16 3 20 20 N 1.31621 * 119.99842 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00324 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47092 * 89.99724 * 21 19 17 23 23 H 1.48498 * 109.47035 * 210.00114 * 21 19 17 24 24 H 1.48502 * 109.46772 * 329.99889 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 31 31 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 32 32 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 33 33 H 1.07991 * 119.85539 * 359.95361 * 10 9 7 34 34 H 1.09001 * 109.62078 * 191.31778 * 11 10 9 35 35 H 1.09005 * 109.61984 * 311.67605 * 11 10 9 36 36 H 1.08995 * 109.21376 * 34.62910 * 12 11 10 37 37 H 1.09007 * 109.21035 * 153.98889 * 12 11 10 38 38 H 1.08997 * 108.61314 * 188.07016 * 13 12 11 39 39 H 1.09007 * 108.60634 * 305.95266 * 13 12 11 40 40 H 1.08990 * 109.20750 * 53.40456 * 14 13 12 41 41 H 1.09002 * 109.20625 * 172.76509 * 14 13 12 42 42 H 1.09004 * 109.62053 * 228.16288 * 15 9 7 43 43 H 1.09006 * 109.61677 * 348.70336 * 15 9 7 44 44 H 0.96999 * 120.00274 * 264.99733 * 16 3 2 45 45 H 0.97001 * 120.00318 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1655 2.1459 0.2588 9 6 5.8858 4.4412 -0.0330 10 6 7.1776 4.6783 0.0459 11 6 7.7033 6.0929 -0.0766 12 6 7.3320 6.8626 1.1928 13 6 5.9361 7.4478 1.0798 14 6 4.8347 6.4042 1.0404 15 6 4.9125 5.5799 -0.2533 16 7 1.6525 2.0974 -1.2519 17 6 0.4156 2.6734 -1.3689 18 1 -0.2743 2.6446 -0.5385 19 6 0.0486 3.2944 -2.5549 20 7 -1.1400 3.8484 -2.6672 21 14 1.2421 3.3449 -3.9910 22 1 1.0398 2.1472 -4.8452 23 1 1.0002 4.5713 -4.7927 24 1 2.6352 3.3565 -3.4767 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8499 1.0378 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4409 3.5484 -0.1309 33 1 7.8658 3.8603 0.1991 34 1 8.7874 6.0721 -0.1882 35 1 7.2553 6.5759 -0.9451 36 1 7.3690 6.1858 2.0464 37 1 8.0477 7.6706 1.3446 38 1 5.7637 8.1035 1.9332 39 1 5.8814 8.0431 0.1683 40 1 4.9393 5.7398 1.8980 41 1 3.8666 6.9027 1.0889 42 1 5.2646 6.2095 -1.0704 43 1 3.9283 5.1785 -0.4951 44 1 2.2720 2.1231 -1.9978 45 1 -1.3964 4.2827 -3.4959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494972805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:52 Heat of formation + Delta-G solvation = -35.340528 kcal Electronic energy + Delta-G solvation = -22756.046961 eV Core-core repulsion = 19579.991844 eV Total energy + Delta-G solvation = -3176.055117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.94286 -38.02410 -36.79829 -33.88730 -32.66676 -32.36095 -31.87521 -30.27427 -28.19607 -25.76578 -24.55449 -23.34398 -22.44477 -20.94821 -20.41287 -20.14716 -18.39117 -17.47676 -17.05365 -15.98890 -15.51812 -14.92955 -14.82457 -14.60239 -14.15957 -13.85182 -13.70682 -13.32905 -13.24333 -13.10036 -12.78287 -12.75329 -12.44533 -12.06545 -11.74002 -11.56238 -11.24302 -11.13517 -11.00434 -10.85644 -10.80050 -10.70366 -10.54729 -10.40975 -10.30799 -10.01490 -9.59464 -9.50844 -9.09240 -8.99627 -8.67221 -7.36381 -5.83612 -3.19531 1.51146 3.32031 3.36842 3.41537 3.49341 3.52749 4.52829 4.53361 4.69772 4.71718 4.90824 4.94643 5.11251 5.20319 5.26216 5.29316 5.38427 5.42987 5.51086 5.63118 5.69278 5.72388 5.78158 5.88436 5.90534 5.92147 5.99200 6.03770 6.07440 6.08779 6.26556 6.27917 6.45915 6.47882 6.53131 6.58694 6.62572 6.82442 6.94124 7.28270 7.87718 7.92407 8.34624 8.50582 9.12764 9.85288 10.04954 11.33980 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015831 B = 0.005210 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.244366 B = 5373.427227 C = 6266.987160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.062 0.938 5 C 0.111 3.889 6 N -0.711 5.711 7 C 0.547 3.453 8 O -0.559 6.559 9 C -0.171 4.171 10 C -0.080 4.080 11 C -0.095 4.095 12 C -0.113 4.113 13 C -0.119 4.119 14 C -0.115 4.115 15 C -0.086 4.086 16 N -0.747 5.747 17 C -0.242 4.242 18 H 0.095 0.905 19 C 0.008 3.992 20 N -0.931 5.931 21 Si 0.878 3.122 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.277 1.277 25 H 0.032 0.968 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.410 0.590 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.362 0.638 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.462 4.447 7.347 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.080 0.920 5 C -0.014 4.014 6 N -0.363 5.363 7 C 0.336 3.664 8 O -0.440 6.440 9 C -0.174 4.174 10 C -0.100 4.100 11 C -0.132 4.132 12 C -0.150 4.150 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.124 4.124 16 N -0.391 5.391 17 C -0.371 4.371 18 H 0.113 0.887 19 C -0.188 4.188 20 N -0.578 5.578 21 Si 0.709 3.291 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.203 1.203 25 H 0.051 0.949 26 H 0.107 0.893 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.248 0.752 33 H 0.141 0.859 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.715 3.896 7.516 16.977 hybrid contribution 0.391 0.249 -1.288 1.369 sum 15.107 4.146 6.228 16.858 Atomic orbital electron populations 1.21781 0.95197 0.99706 1.03769 1.22033 0.97342 0.97830 1.00116 1.20550 0.89866 0.93003 0.90739 0.91983 1.21730 0.95509 0.82739 1.01410 1.46022 1.07285 1.10750 1.72252 1.18430 0.82487 0.88894 0.76639 1.90737 1.56277 1.46135 1.50813 1.21285 0.95958 0.93704 1.06437 1.23253 0.95430 0.98056 0.93254 1.20939 1.00879 0.92609 0.98812 1.21252 0.96819 0.99393 0.97568 1.21147 0.94283 0.98177 1.02069 1.21380 0.98806 0.97559 0.97463 1.20935 0.98370 0.94820 0.98265 1.42838 1.16808 1.67687 1.11724 1.19057 0.90571 1.27648 0.99866 0.88739 1.24643 0.96339 1.00332 0.97472 1.69690 1.19300 1.42073 1.26733 0.86657 0.81197 0.77358 0.83935 1.21180 1.21832 1.20311 0.94860 0.89349 0.93887 0.93548 0.92660 0.91460 0.91899 0.75163 0.85878 0.90978 0.90364 0.91719 0.91658 0.92208 0.92127 0.91768 0.91128 0.90312 0.90539 0.80518 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.18 37.16 0.34 -2.30 16 2 C -0.13 -2.21 5.61 -26.73 -0.15 -2.36 16 3 C 0.17 3.00 2.59 -67.93 -0.18 2.82 16 4 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 5 C 0.11 1.83 5.23 -4.04 -0.02 1.81 16 6 N -0.71 -11.76 5.35 -61.49 -0.33 -12.09 16 7 C 0.55 9.22 7.75 -12.66 -0.10 9.13 16 8 O -0.56 -10.95 16.18 5.27 0.09 -10.86 16 9 C -0.17 -2.35 5.09 -102.53 -0.52 -2.87 16 10 C -0.08 -0.97 8.92 -35.81 -0.32 -1.29 16 11 C -0.10 -0.87 5.61 -27.52 -0.15 -1.02 16 12 C -0.11 -0.95 5.66 -27.34 -0.15 -1.10 16 13 C -0.12 -1.05 5.28 -27.97 -0.15 -1.20 16 14 C -0.11 -1.21 5.68 -27.04 -0.15 -1.36 16 15 C -0.09 -1.06 5.41 -27.23 -0.15 -1.21 16 16 N -0.75 -16.04 4.31 -53.42 -0.23 -16.27 16 17 C -0.24 -6.17 8.24 -15.06 -0.12 -6.30 16 18 H 0.09 2.60 7.55 -52.49 -0.40 2.20 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -27.73 13.97 55.49 0.78 -26.96 16 21 Si 0.88 21.23 27.74 -169.99 -4.71 16.52 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.33 6.52 56.52 0.37 -5.97 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.09 1.90 5.99 -51.93 -0.31 1.59 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 32 H 0.41 6.77 5.92 -40.82 -0.24 6.53 16 33 H 0.12 1.59 7.44 -52.49 -0.39 1.20 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.70 6.75 -51.93 -0.35 0.35 16 36 H 0.06 0.59 7.85 -51.93 -0.41 0.18 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.51 7.88 -51.93 -0.41 0.10 16 40 H 0.06 0.72 7.85 -51.93 -0.41 0.31 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.89 6.74 -51.93 -0.35 0.54 16 43 H 0.08 1.04 5.99 -51.93 -0.31 0.73 16 44 H 0.36 7.96 5.66 -40.82 -0.23 7.73 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 347.46 15.07 5.24 5.24 Total: -1.00 -29.94 347.46 -8.72 -38.67 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -7.62 Total: 12.88 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -1.92 Total: -7.12 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.22 Total: -55.32 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.71 Total: 16.52 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.94 -8.72 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494972805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.325 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds