Wall clock time and date at job start Tue Mar 31 2020 01:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21611 * 119.99669 * 0.02562 * 7 6 5 9 9 C 1.47098 * 120.00105 * 180.02562 * 7 6 5 10 10 C 1.31566 * 119.85171 * 180.02562 * 9 7 6 11 11 C 1.51411 * 120.28871 * 179.97438 * 10 9 7 12 12 C 1.53031 * 108.57437 * 71.58938 * 11 10 9 13 13 C 1.51776 * 110.81101 * 274.28643 * 12 11 10 14 14 C 1.51781 * 113.84272 * 66.93862 * 13 12 11 15 15 C 1.51410 * 119.85606 * 359.72861 * 9 7 6 16 16 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 17 17 C 1.36941 * 119.99583 * 85.00384 * 16 3 2 18 18 H 1.07999 * 120.00378 * 359.97438 * 17 16 3 19 19 C 1.38814 * 119.99657 * 179.97438 * 17 16 3 20 20 N 1.31621 * 119.99842 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00324 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47092 * 89.99724 * 21 19 17 23 23 H 1.48498 * 109.47035 * 210.00114 * 21 19 17 24 24 H 1.48502 * 109.46772 * 329.99889 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 31 31 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 32 32 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 33 33 H 1.07991 * 119.85539 * 359.95361 * 10 9 7 34 34 H 1.09001 * 109.62078 * 191.31778 * 11 10 9 35 35 H 1.09005 * 109.61984 * 311.67605 * 11 10 9 36 36 H 1.08995 * 109.21376 * 34.62910 * 12 11 10 37 37 H 1.09007 * 109.21035 * 153.98889 * 12 11 10 38 38 H 1.08997 * 108.61314 * 188.07016 * 13 12 11 39 39 H 1.09007 * 108.60634 * 305.95266 * 13 12 11 40 40 H 1.08990 * 109.20750 * 53.40456 * 14 13 12 41 41 H 1.09002 * 109.20625 * 172.76509 * 14 13 12 42 42 H 1.09004 * 109.62053 * 228.16288 * 15 9 7 43 43 H 1.09006 * 109.61677 * 348.70336 * 15 9 7 44 44 H 0.96999 * 120.00274 * 264.99733 * 16 3 2 45 45 H 0.97001 * 120.00318 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1655 2.1459 0.2588 9 6 5.8858 4.4412 -0.0330 10 6 7.1776 4.6783 0.0459 11 6 7.7033 6.0929 -0.0766 12 6 7.3320 6.8626 1.1928 13 6 5.9361 7.4478 1.0798 14 6 4.8347 6.4042 1.0404 15 6 4.9125 5.5799 -0.2533 16 7 1.6525 2.0974 -1.2519 17 6 0.4156 2.6734 -1.3689 18 1 -0.2743 2.6446 -0.5385 19 6 0.0486 3.2944 -2.5549 20 7 -1.1400 3.8484 -2.6672 21 14 1.2421 3.3449 -3.9910 22 1 1.0398 2.1472 -4.8452 23 1 1.0002 4.5713 -4.7927 24 1 2.6352 3.3565 -3.4767 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8499 1.0378 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4409 3.5484 -0.1309 33 1 7.8658 3.8603 0.1991 34 1 8.7874 6.0721 -0.1882 35 1 7.2553 6.5759 -0.9451 36 1 7.3690 6.1858 2.0464 37 1 8.0477 7.6706 1.3446 38 1 5.7637 8.1035 1.9332 39 1 5.8814 8.0431 0.1683 40 1 4.9393 5.7398 1.8980 41 1 3.8666 6.9027 1.0889 42 1 5.2646 6.2095 -1.0704 43 1 3.9283 5.1785 -0.4951 44 1 2.2720 2.1231 -1.9978 45 1 -1.3964 4.2827 -3.4959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494972805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:51 Heat of formation + Delta-G solvation = -53.526609 kcal Electronic energy + Delta-G solvation = -22756.835569 eV Core-core repulsion = 19579.991844 eV Total energy + Delta-G solvation = -3176.843725 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15505 -39.06688 -38.29176 -35.37609 -34.23588 -33.49137 -32.76970 -32.08566 -29.67137 -26.71449 -25.74250 -24.85622 -23.88336 -22.12307 -21.71804 -21.18974 -19.91639 -19.01307 -18.17073 -17.24262 -17.10939 -16.18802 -15.97133 -15.75000 -15.72328 -15.07157 -14.71957 -14.69566 -14.52514 -14.47663 -14.21164 -13.95667 -13.81335 -13.12311 -12.93145 -12.91653 -12.88586 -12.59451 -12.33953 -12.13985 -12.08650 -11.89812 -11.61466 -11.59835 -11.53425 -11.42499 -11.34188 -11.01223 -10.81790 -10.21414 -9.87892 -9.30456 -7.95832 -5.27976 0.43294 1.38472 1.40922 1.46788 2.25247 2.27991 2.50939 3.36001 3.55280 3.67488 3.75699 3.85163 3.97568 4.10433 4.11564 4.21779 4.29375 4.42620 4.45883 4.53297 4.57334 4.67368 4.76972 4.80156 4.83446 4.85933 4.96012 5.04770 5.10615 5.18109 5.21723 5.26546 5.28073 5.31759 5.42604 5.48948 5.51272 5.56843 5.66186 5.71941 5.86479 6.26596 6.55797 7.12022 7.19194 7.86646 8.05575 9.25106 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015831 B = 0.005210 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.244366 B = 5373.427227 C = 6266.987160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.169 3.831 4 H 0.059 0.941 5 C 0.118 3.882 6 N -0.712 5.712 7 C 0.543 3.457 8 O -0.592 6.592 9 C -0.193 4.193 10 C -0.061 4.061 11 C -0.093 4.093 12 C -0.110 4.110 13 C -0.118 4.118 14 C -0.113 4.113 15 C -0.081 4.081 16 N -0.746 5.746 17 C -0.206 4.206 18 H 0.070 0.930 19 C -0.056 4.056 20 N -0.981 5.981 21 Si 0.938 3.062 22 H -0.290 1.290 23 H -0.300 1.300 24 H -0.256 1.256 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.410 0.590 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.362 0.638 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.853 4.810 7.886 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.061 3.939 4 H 0.077 0.923 5 C -0.007 4.007 6 N -0.364 5.364 7 C 0.333 3.667 8 O -0.475 6.475 9 C -0.196 4.196 10 C -0.081 4.081 11 C -0.130 4.130 12 C -0.147 4.147 13 C -0.156 4.156 14 C -0.150 4.150 15 C -0.119 4.119 16 N -0.390 5.390 17 C -0.336 4.336 18 H 0.088 0.912 19 C -0.248 4.248 20 N -0.632 5.632 21 Si 0.768 3.232 22 H -0.217 1.217 23 H -0.227 1.227 24 H -0.181 1.181 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.248 0.752 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.195 0.805 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.144 4.236 8.090 19.424 hybrid contribution -0.326 0.059 -1.324 1.364 sum 16.818 4.295 6.766 18.630 Atomic orbital electron populations 1.21689 0.96207 1.00491 1.01641 1.21959 0.96244 0.96854 1.01731 1.20688 0.90958 0.93488 0.88783 0.92291 1.21646 0.94007 0.82961 1.02051 1.46062 1.07462 1.10692 1.72169 1.18932 0.82120 0.89923 0.75701 1.90710 1.56865 1.47397 1.52561 1.21228 0.96870 0.92458 1.09023 1.23517 0.94592 0.99644 0.90362 1.21042 1.02061 0.90418 0.99476 1.21248 0.97073 0.99749 0.96659 1.21147 0.93786 0.97663 1.02985 1.21369 0.99782 0.97699 0.96156 1.20910 0.96947 0.94580 0.99454 1.42820 1.15317 1.67718 1.13142 1.18960 0.91102 1.25179 0.98405 0.91246 1.25247 0.97841 1.01491 1.00184 1.69845 1.21567 1.44559 1.27237 0.85664 0.80316 0.76460 0.80786 1.21704 1.22738 1.18104 0.92700 0.93480 0.93875 0.90275 0.92635 0.89999 0.92299 0.75177 0.86878 0.89024 0.89640 0.92588 0.89418 0.91157 0.91323 0.92779 0.91154 0.89199 0.92409 0.80504 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 9.18 71.98 0.66 -4.32 16 2 C -0.13 -4.00 5.61 30.60 0.17 -3.83 16 3 C 0.17 5.82 2.59 44.99 0.12 5.94 16 4 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 5 C 0.12 3.72 5.23 86.38 0.45 4.17 16 6 N -0.71 -23.00 5.35 -466.71 -2.50 -25.50 16 7 C 0.54 17.94 7.75 86.57 0.67 18.61 16 8 O -0.59 -22.86 16.18 -4.06 -0.07 -22.93 16 9 C -0.19 -5.09 5.09 -17.89 -0.09 -5.18 16 10 C -0.06 -1.38 8.92 25.34 0.23 -1.15 16 11 C -0.09 -1.40 5.61 30.08 0.17 -1.24 16 12 C -0.11 -1.51 5.66 30.20 0.17 -1.34 16 13 C -0.12 -1.76 5.28 29.79 0.16 -1.61 16 14 C -0.11 -2.22 5.68 30.39 0.17 -2.05 16 15 C -0.08 -1.90 5.41 30.27 0.16 -1.73 16 16 N -0.75 -31.59 4.31 -322.93 -1.39 -32.99 16 17 C -0.21 -10.61 8.24 84.03 0.69 -9.92 16 18 H 0.07 3.92 7.55 -2.91 -0.02 3.90 16 19 C -0.06 -3.12 5.50 84.86 0.47 -2.66 16 20 N -0.98 -60.18 13.97 21.65 0.30 -59.87 16 21 Si 0.94 44.26 27.74 68.60 1.90 46.17 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.26 -11.02 6.52 99.48 0.65 -10.37 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 2.03 5.99 -2.39 -0.01 2.02 16 27 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.41 13.34 5.92 -92.71 -0.55 12.79 16 33 H 0.11 2.78 7.44 -2.92 -0.02 2.76 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.24 6.75 -2.38 -0.02 1.22 16 36 H 0.06 0.88 7.85 -2.39 -0.02 0.86 16 37 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.94 7.88 -2.38 -0.02 0.92 16 40 H 0.05 1.16 7.85 -2.39 -0.02 1.14 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 1.86 6.74 -2.38 -0.02 1.84 16 43 H 0.06 1.55 5.99 -2.38 -0.01 1.53 16 44 H 0.36 15.46 5.66 -92.71 -0.52 14.94 16 45 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -65.42 347.46 2.29 -63.13 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: -0.16 Total: 38.29 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 4.20 Total: -6.30 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -3.58 Total: -118.36 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.07 Total: -22.93 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.17 kcal Total: -65.42 2.29 -63.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494972805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.602 kcal (2) G-P(sol) polarization free energy of solvation -65.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds