Wall clock time and date at job start Tue Mar 31 2020 02:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47037 * 2 1 4 4 N 1.46500 * 109.47408 * 239.99637 * 2 1 3 5 5 C 1.46496 * 120.00574 * 237.27752 * 4 2 1 6 6 C 1.52995 * 109.47282 * 89.99382 * 5 4 2 7 7 N 1.46504 * 109.46817 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00053 * 90.00221 * 7 6 5 9 9 C 1.36938 * 120.00079 * 269.99829 * 7 6 5 10 10 H 1.07995 * 120.00056 * 146.19651 * 9 7 6 11 11 C 1.38816 * 119.99763 * 326.19922 * 9 7 6 12 12 N 1.31619 * 119.99748 * 155.01567 * 11 9 7 13 13 Si 1.86798 * 120.00182 * 335.00998 * 11 9 7 14 14 H 1.48501 * 109.46817 * 94.80363 * 13 11 9 15 15 H 1.48496 * 109.47228 * 214.80580 * 13 11 9 16 16 H 1.48494 * 109.47092 * 334.80753 * 13 11 9 17 17 C 1.34776 * 119.99741 * 57.26974 * 4 2 1 18 18 O 1.21282 * 119.99982 * 4.23638 * 17 4 2 19 19 C 1.50699 * 120.00254 * 184.22984 * 17 4 2 20 20 H 1.08999 * 115.54837 * 50.01291 * 19 17 4 21 21 C 1.52997 * 117.50026 * 264.34466 * 19 17 4 22 22 C 1.52994 * 60.00030 * 252.50909 * 21 19 17 23 23 C 1.52991 * 138.59017 * 130.89253 * 22 21 19 24 24 C 1.52997 * 138.58885 * 229.11237 * 22 21 19 25 25 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47298 * 60.00606 * 1 2 3 27 27 H 1.09004 * 109.47431 * 299.99568 * 1 2 3 28 28 H 1.08998 * 109.47157 * 119.99927 * 2 1 3 29 29 H 1.09000 * 109.47796 * 65.67416 * 3 2 1 30 30 H 1.09001 * 109.47404 * 185.67946 * 3 2 1 31 31 H 1.09001 * 109.46834 * 305.67149 * 3 2 1 32 32 H 1.08997 * 109.47514 * 210.00219 * 5 4 2 33 33 H 1.09005 * 109.46634 * 329.99415 * 5 4 2 34 34 H 1.08994 * 109.47581 * 300.00063 * 6 5 4 35 35 H 1.09003 * 109.47070 * 60.00920 * 6 5 4 36 36 H 1.09008 * 109.47354 * 85.17154 * 8 7 6 37 37 H 1.09005 * 109.47201 * 205.16901 * 8 7 6 38 38 H 1.08994 * 109.47601 * 325.17027 * 8 7 6 39 39 H 0.97001 * 119.99785 * 179.97438 * 12 11 9 40 40 H 1.09000 * 117.49830 * 359.97438 * 21 19 17 41 41 H 1.09006 * 117.49897 * 144.99842 * 21 19 17 42 42 H 1.08997 * 117.49553 * 238.38324 * 23 22 21 43 43 H 1.08994 * 117.50122 * 23.40580 * 23 22 21 44 44 H 1.08997 * 117.49912 * 336.58918 * 24 22 21 45 45 H 1.08994 * 117.49781 * 121.61131 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.9091 -1.8460 -1.0625 6 6 2.0752 -3.1258 -0.9763 7 7 2.9661 -4.2810 -0.8422 8 6 3.3682 -4.7454 0.4878 9 6 3.4229 -4.9269 -1.9599 10 1 4.4117 -5.3610 -1.9665 11 6 2.6149 -5.0235 -3.0846 12 7 3.1579 -5.1761 -4.2738 13 14 0.7571 -4.9372 -2.9101 14 1 0.3032 -3.5412 -3.1348 15 1 0.1237 -5.8311 -3.9126 16 1 0.3675 -5.3705 -1.5443 17 6 1.6480 -0.2632 -2.4195 18 8 0.9735 0.7383 -2.5334 19 6 2.0721 -1.0296 -3.6458 20 1 1.8814 -2.1024 -3.6189 21 6 3.3290 -0.5536 -4.3768 22 6 1.9497 -0.3235 -4.9975 23 6 1.1509 0.8195 -5.6268 24 6 1.2469 -0.5304 -6.3407 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7620 1.9262 0.9364 30 1 3.1252 1.4442 -0.1017 31 1 1.5960 1.9847 -0.8349 32 1 3.5678 -1.8992 -1.9294 33 1 3.5076 -1.7406 -0.1576 34 1 1.4166 -3.0727 -0.1094 35 1 1.4768 -3.2312 -1.8813 36 1 2.6087 -5.4207 0.8819 37 1 4.3203 -5.2713 0.4166 38 1 3.4748 -3.8898 1.1546 39 1 2.5932 -5.2440 -5.0596 40 1 3.8490 0.3142 -3.9709 41 1 3.9652 -1.3133 -4.8309 42 1 0.1971 1.0792 -5.1677 43 1 1.7121 1.6531 -6.0489 44 1 1.8714 -0.5848 -7.2323 45 1 0.3563 -1.1587 -6.3511 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507840454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:01 Heat of formation + Delta-G solvation = 54.871104 kcal Electronic energy + Delta-G solvation = -23841.245791 eV Core-core repulsion = 20669.102544 eV Total energy + Delta-G solvation = -3172.143247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.07196 -37.58582 -36.41348 -35.17967 -32.97340 -31.86739 -31.40272 -28.25622 -27.01124 -26.18311 -24.40824 -23.08697 -22.14079 -21.53478 -20.87761 -19.29675 -18.03653 -16.81767 -16.44240 -16.01084 -15.24513 -14.98086 -14.73799 -14.38681 -14.16830 -13.91637 -13.50358 -13.23777 -13.01727 -12.93736 -12.49503 -12.24208 -11.92543 -11.89115 -11.83596 -11.61722 -11.34148 -11.23248 -11.11730 -10.95745 -10.90011 -10.66241 -10.52545 -9.92056 -9.83536 -9.73495 -9.63076 -9.58107 -9.04382 -8.64813 -8.33518 -6.95105 -6.08247 -3.44273 2.91504 3.21660 3.25500 3.42409 3.46091 4.00749 4.04842 4.43728 4.57729 4.79747 5.05439 5.13765 5.14620 5.27529 5.29143 5.36759 5.52907 5.55161 5.74653 5.75345 5.82335 5.85653 5.91966 5.93635 5.95360 5.98299 6.07359 6.10233 6.13719 6.19605 6.21594 6.34837 6.37150 6.40639 6.46136 6.48586 6.49105 6.63446 6.73848 7.04224 7.76956 7.94726 8.27136 8.60232 8.88834 9.63092 10.01857 11.06829 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.009003 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.897602 B = 3109.249821 C = 4492.022750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.145 3.855 3 C -0.164 4.164 4 N -0.606 5.606 5 C 0.090 3.910 6 C 0.122 3.878 7 N -0.609 5.609 8 C 0.124 3.876 9 C -0.272 4.272 10 H 0.083 0.917 11 C 0.040 3.960 12 N -0.890 5.890 13 Si 0.863 3.137 14 H -0.282 1.282 15 H -0.300 1.300 16 H -0.272 1.272 17 C 0.551 3.449 18 O -0.543 6.543 19 C -0.138 4.138 20 H 0.135 0.865 21 C -0.098 4.098 22 C -0.201 4.201 23 C -0.117 4.117 24 C -0.131 4.131 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.007 0.993 37 H 0.047 0.953 38 H 0.027 0.973 39 H 0.264 0.736 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 10.723 4.291 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.041 3.959 3 C -0.222 4.222 4 N -0.339 5.339 5 C -0.034 4.034 6 C -0.005 4.005 7 N -0.334 5.334 8 C -0.021 4.021 9 C -0.400 4.400 10 H 0.101 0.899 11 C -0.161 4.161 12 N -0.531 5.531 13 Si 0.694 3.306 14 H -0.211 1.211 15 H -0.228 1.228 16 H -0.198 1.198 17 C 0.340 3.660 18 O -0.421 6.421 19 C -0.158 4.158 20 H 0.152 0.848 21 C -0.135 4.135 22 C -0.202 4.202 23 C -0.154 4.154 24 C -0.168 4.168 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.025 0.975 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.130 0.870 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.144 11.179 4.097 12.098 hybrid contribution -1.088 -0.347 0.160 1.153 sum -3.232 10.832 4.257 12.079 Atomic orbital electron populations 1.22213 0.95253 1.02172 1.03156 1.20959 0.94460 0.93119 0.87325 1.22180 1.01051 0.96378 1.02624 1.48161 1.49089 1.31537 1.05092 1.22498 0.93033 0.84679 1.03229 1.21567 0.92675 0.86446 0.99780 1.44025 1.57246 1.29474 1.02646 1.21090 0.98184 0.96465 0.86344 1.18830 0.98606 1.32920 0.89625 0.89930 1.25322 0.97017 0.98391 0.95369 1.69884 1.35023 1.50721 0.97466 0.87238 0.88944 0.76710 0.77741 1.21088 1.22830 1.19753 1.19698 0.78924 0.83777 0.83603 1.90546 1.39280 1.25747 1.86537 1.22116 1.03916 1.00564 0.89223 0.84780 1.22639 0.88873 1.02135 0.99823 1.21160 1.00103 1.05209 0.93709 1.22550 1.00770 0.91104 1.00950 1.22682 1.01385 0.99547 0.93148 0.92836 0.90350 0.92200 0.89921 0.92390 0.92889 0.90585 0.89169 0.91190 0.94220 0.92538 0.97497 0.93400 0.95455 0.92634 0.88796 0.87038 0.88448 0.89049 0.88478 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 9.08 37.16 0.34 -2.11 16 2 C 0.14 2.09 3.27 -67.94 -0.22 1.87 16 3 C -0.16 -2.18 9.07 37.15 0.34 -1.84 16 4 N -0.61 -10.35 2.42 -166.12 -0.40 -10.75 16 5 C 0.09 1.62 5.43 -4.05 -0.02 1.60 16 6 C 0.12 2.53 4.85 -4.04 -0.02 2.51 16 7 N -0.61 -13.75 2.54 -181.12 -0.46 -14.21 16 8 C 0.12 2.34 10.70 59.85 0.64 2.98 16 9 C -0.27 -7.16 9.91 -15.06 -0.15 -7.31 16 10 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 11 C 0.04 1.09 5.28 -17.43 -0.09 1.00 16 12 N -0.89 -25.48 13.97 55.49 0.78 -24.71 16 13 Si 0.86 21.66 24.56 -169.99 -4.17 17.49 16 14 H -0.28 -6.92 5.97 56.52 0.34 -6.59 16 15 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 16 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 17 C 0.55 10.37 6.82 -10.99 -0.07 10.30 16 18 O -0.54 -10.73 12.59 5.56 0.07 -10.66 16 19 C -0.14 -2.65 4.43 -91.78 -0.41 -3.05 16 20 H 0.13 2.99 5.77 -51.93 -0.30 2.69 16 21 C -0.10 -1.64 10.08 -26.74 -0.27 -1.91 16 22 C -0.20 -3.48 5.10 -154.52 -0.79 -4.27 16 23 C -0.12 -1.75 10.14 -26.73 -0.27 -2.02 16 24 C -0.13 -1.97 10.53 -26.73 -0.28 -2.25 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.30 6.12 -51.93 -0.32 0.98 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.06 7.82 -51.93 -0.41 0.66 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.17 6.40 -51.93 -0.33 0.83 16 32 H 0.09 1.77 6.84 -51.93 -0.36 1.41 16 33 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 34 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.06 1.31 1.95 -51.93 -0.10 1.21 16 36 H 0.01 0.13 8.14 -51.92 -0.42 -0.29 16 37 H 0.05 0.88 8.00 -51.93 -0.42 0.46 16 38 H 0.03 0.43 8.11 -51.93 -0.42 0.01 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 42 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -29.33 353.90 -7.89 -37.22 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.75 Total: 4.79 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.28 Total: -4.51 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.09 Total: -49.68 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.17 Total: 17.49 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.33 -7.89 -37.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507840454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.095 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds