Wall clock time and date at job start Tue Mar 31 2020 02:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47037 * 2 1 4 4 N 1.46500 * 109.47408 * 239.99637 * 2 1 3 5 5 C 1.46496 * 120.00574 * 237.27752 * 4 2 1 6 6 C 1.52995 * 109.47282 * 89.99382 * 5 4 2 7 7 N 1.46504 * 109.46817 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00053 * 90.00221 * 7 6 5 9 9 C 1.36938 * 120.00079 * 269.99829 * 7 6 5 10 10 H 1.07995 * 120.00056 * 146.19651 * 9 7 6 11 11 C 1.38816 * 119.99763 * 326.19922 * 9 7 6 12 12 N 1.31619 * 119.99748 * 155.01567 * 11 9 7 13 13 Si 1.86798 * 120.00182 * 335.00998 * 11 9 7 14 14 H 1.48501 * 109.46817 * 94.80363 * 13 11 9 15 15 H 1.48496 * 109.47228 * 214.80580 * 13 11 9 16 16 H 1.48494 * 109.47092 * 334.80753 * 13 11 9 17 17 C 1.34776 * 119.99741 * 57.26974 * 4 2 1 18 18 O 1.21282 * 119.99982 * 4.23638 * 17 4 2 19 19 C 1.50699 * 120.00254 * 184.22984 * 17 4 2 20 20 H 1.08999 * 115.54837 * 50.01291 * 19 17 4 21 21 C 1.52997 * 117.50026 * 264.34466 * 19 17 4 22 22 C 1.52994 * 60.00030 * 252.50909 * 21 19 17 23 23 C 1.52991 * 138.59017 * 130.89253 * 22 21 19 24 24 C 1.52997 * 138.58885 * 229.11237 * 22 21 19 25 25 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47298 * 60.00606 * 1 2 3 27 27 H 1.09004 * 109.47431 * 299.99568 * 1 2 3 28 28 H 1.08998 * 109.47157 * 119.99927 * 2 1 3 29 29 H 1.09000 * 109.47796 * 65.67416 * 3 2 1 30 30 H 1.09001 * 109.47404 * 185.67946 * 3 2 1 31 31 H 1.09001 * 109.46834 * 305.67149 * 3 2 1 32 32 H 1.08997 * 109.47514 * 210.00219 * 5 4 2 33 33 H 1.09005 * 109.46634 * 329.99415 * 5 4 2 34 34 H 1.08994 * 109.47581 * 300.00063 * 6 5 4 35 35 H 1.09003 * 109.47070 * 60.00920 * 6 5 4 36 36 H 1.09008 * 109.47354 * 85.17154 * 8 7 6 37 37 H 1.09005 * 109.47201 * 205.16901 * 8 7 6 38 38 H 1.08994 * 109.47601 * 325.17027 * 8 7 6 39 39 H 0.97001 * 119.99785 * 179.97438 * 12 11 9 40 40 H 1.09000 * 117.49830 * 359.97438 * 21 19 17 41 41 H 1.09006 * 117.49897 * 144.99842 * 21 19 17 42 42 H 1.08997 * 117.49553 * 238.38324 * 23 22 21 43 43 H 1.08994 * 117.50122 * 23.40580 * 23 22 21 44 44 H 1.08997 * 117.49912 * 336.58918 * 24 22 21 45 45 H 1.08994 * 117.49781 * 121.61131 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.9091 -1.8460 -1.0625 6 6 2.0752 -3.1258 -0.9763 7 7 2.9661 -4.2810 -0.8422 8 6 3.3682 -4.7454 0.4878 9 6 3.4229 -4.9269 -1.9599 10 1 4.4117 -5.3610 -1.9665 11 6 2.6149 -5.0235 -3.0846 12 7 3.1579 -5.1761 -4.2738 13 14 0.7571 -4.9372 -2.9101 14 1 0.3032 -3.5412 -3.1348 15 1 0.1237 -5.8311 -3.9126 16 1 0.3675 -5.3705 -1.5443 17 6 1.6480 -0.2632 -2.4195 18 8 0.9735 0.7383 -2.5334 19 6 2.0721 -1.0296 -3.6458 20 1 1.8814 -2.1024 -3.6189 21 6 3.3290 -0.5536 -4.3768 22 6 1.9497 -0.3235 -4.9975 23 6 1.1509 0.8195 -5.6268 24 6 1.2469 -0.5304 -6.3407 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7620 1.9262 0.9364 30 1 3.1252 1.4442 -0.1017 31 1 1.5960 1.9847 -0.8349 32 1 3.5678 -1.8992 -1.9294 33 1 3.5076 -1.7406 -0.1576 34 1 1.4166 -3.0727 -0.1094 35 1 1.4768 -3.2312 -1.8813 36 1 2.6087 -5.4207 0.8819 37 1 4.3203 -5.2713 0.4166 38 1 3.4748 -3.8898 1.1546 39 1 2.5932 -5.2440 -5.0596 40 1 3.8490 0.3142 -3.9709 41 1 3.9652 -1.3133 -4.8309 42 1 0.1971 1.0792 -5.1677 43 1 1.7121 1.6531 -6.0489 44 1 1.8714 -0.5848 -7.2323 45 1 0.3563 -1.1587 -6.3511 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507840454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:00 Heat of formation + Delta-G solvation = 39.312504 kcal Electronic energy + Delta-G solvation = -23841.920462 eV Core-core repulsion = 20669.102544 eV Total energy + Delta-G solvation = -3172.817918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45788 -38.89008 -38.06670 -36.63702 -34.32568 -33.72288 -32.84760 -29.77073 -28.09084 -27.99912 -25.84642 -24.66593 -23.33655 -22.80253 -22.66662 -20.57637 -19.47318 -18.76676 -17.84082 -17.52579 -16.94302 -16.42640 -15.93233 -15.80798 -15.55150 -15.49457 -15.02027 -14.92163 -14.48308 -14.32937 -14.12673 -13.61911 -13.53726 -13.34795 -13.06701 -12.94588 -12.78783 -12.64725 -12.52743 -12.39700 -12.27136 -12.13228 -12.09188 -11.78847 -11.45665 -11.16015 -11.06767 -10.95022 -10.64934 -10.43452 -9.79482 -8.79185 -8.20883 -5.51206 1.21921 1.34885 1.41428 1.48269 1.91183 2.36454 2.66361 2.74874 3.04269 3.28069 3.43028 3.64071 3.83087 3.94425 4.02580 4.13813 4.17054 4.33495 4.42836 4.44501 4.52439 4.58729 4.64892 4.68499 4.72773 4.75889 4.76676 4.79455 4.88206 4.90980 4.94600 4.95262 4.99741 5.01497 5.15495 5.19155 5.22532 5.26936 5.36378 5.75635 5.91340 6.16792 6.37683 6.96304 7.18884 7.63375 8.03931 8.97847 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.009003 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.897602 B = 3109.249821 C = 4492.022750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 C -0.156 4.156 4 N -0.602 5.602 5 C 0.105 3.895 6 C 0.121 3.879 7 N -0.622 5.622 8 C 0.121 3.879 9 C -0.255 4.255 10 H 0.056 0.944 11 C 0.001 3.999 12 N -0.928 5.928 13 Si 0.915 3.085 14 H -0.282 1.282 15 H -0.313 1.313 16 H -0.270 1.270 17 C 0.550 3.450 18 O -0.555 6.555 19 C -0.160 4.160 20 H 0.098 0.902 21 C -0.083 4.083 22 C -0.227 4.227 23 C -0.101 4.101 24 C -0.127 4.127 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.030 0.970 36 H 0.011 0.989 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.261 0.739 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 12.329 6.211 13.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 C -0.213 4.213 4 N -0.335 5.335 5 C -0.020 4.020 6 C -0.006 4.006 7 N -0.347 5.347 8 C -0.023 4.023 9 C -0.385 4.385 10 H 0.074 0.926 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.746 3.254 14 H -0.210 1.210 15 H -0.242 1.242 16 H -0.195 1.195 17 C 0.339 3.661 18 O -0.435 6.435 19 C -0.181 4.181 20 H 0.116 0.884 21 C -0.120 4.120 22 C -0.227 4.227 23 C -0.137 4.137 24 C -0.164 4.164 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.030 0.970 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.329 12.798 6.072 14.356 hybrid contribution -1.006 -0.850 -0.369 1.368 sum -3.335 11.948 5.703 13.653 Atomic orbital electron populations 1.22165 0.95281 1.01521 1.03342 1.21297 0.94500 0.93958 0.86879 1.22093 1.00849 0.95309 1.03095 1.48193 1.48629 1.31105 1.05536 1.22203 0.92391 0.83837 1.03551 1.21582 0.92738 0.86993 0.99244 1.44159 1.57348 1.30133 1.03025 1.21236 0.98099 0.98088 0.84833 1.18746 0.97358 1.31614 0.90802 0.92626 1.25668 0.99487 0.99270 0.95254 1.69967 1.35834 1.53351 0.98019 0.86397 0.85675 0.76225 0.77058 1.21036 1.24162 1.19527 1.19654 0.78817 0.83636 0.84032 1.90535 1.39798 1.26335 1.86804 1.21963 1.06344 0.98829 0.90922 0.88395 1.22571 0.88375 1.02084 0.98965 1.21460 1.00178 1.07309 0.93768 1.22620 1.00025 0.91423 0.99651 1.22833 1.01117 0.99532 0.92869 0.93846 0.92960 0.89190 0.87299 0.89542 0.92730 0.93034 0.91355 0.88361 0.92263 0.95255 0.97042 0.93446 0.91796 0.92969 0.87267 0.87892 0.89282 0.86609 0.86373 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 9.08 71.98 0.65 -3.72 16 2 C 0.14 3.51 3.27 44.99 0.15 3.66 16 3 C -0.16 -3.66 9.07 71.98 0.65 -3.01 16 4 N -0.60 -19.62 2.42 -797.87 -1.93 -21.56 16 5 C 0.11 3.59 5.43 86.38 0.47 4.06 16 6 C 0.12 4.81 4.85 86.38 0.42 5.23 16 7 N -0.62 -27.22 2.54 -726.94 -1.85 -29.06 16 8 C 0.12 4.23 10.70 127.77 1.37 5.60 16 9 C -0.26 -13.59 9.91 84.03 0.83 -12.76 16 10 H 0.06 3.23 8.06 -2.91 -0.02 3.21 16 11 C 0.00 0.06 5.28 84.86 0.45 0.51 16 12 N -0.93 -54.84 13.97 21.65 0.30 -54.54 16 13 Si 0.91 45.96 24.56 68.60 1.68 47.65 16 14 H -0.28 -13.99 5.97 99.48 0.59 -13.40 16 15 H -0.31 -16.12 7.11 99.48 0.71 -15.42 16 16 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 17 C 0.55 20.51 6.82 87.66 0.60 21.11 16 18 O -0.56 -21.75 12.59 -3.04 -0.04 -21.79 16 19 C -0.16 -6.25 4.43 -11.54 -0.05 -6.30 16 20 H 0.10 4.56 5.77 -2.39 -0.01 4.55 16 21 C -0.08 -2.80 10.08 30.59 0.31 -2.50 16 22 C -0.23 -7.80 5.10 -52.19 -0.27 -8.07 16 23 C -0.10 -2.88 10.14 30.59 0.31 -2.57 16 24 C -0.13 -3.72 10.53 30.59 0.32 -3.40 16 25 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.05 1.67 6.12 -2.39 -0.01 1.65 16 27 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.11 2.29 7.82 -2.39 -0.02 2.27 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.48 6.40 -2.39 -0.02 1.47 16 32 H 0.07 2.66 6.84 -2.39 -0.02 2.64 16 33 H 0.10 2.81 7.94 -2.38 -0.02 2.79 16 34 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 35 H 0.03 1.36 1.95 -2.39 0.00 1.35 16 36 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.05 1.64 8.00 -2.38 -0.02 1.62 16 38 H 0.06 1.76 8.11 -2.39 -0.02 1.74 16 39 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 40 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.10 3.60 8.14 -2.38 -0.02 3.58 16 42 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 44 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 45 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -64.63 353.90 5.22 -59.41 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.84 Total: 22.04 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 6.21 Total: -2.15 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -3.48 Total: -105.16 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.04 Total: -21.79 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.68 Total: 47.65 kcal Total: -64.63 5.22 -59.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507840454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.719 kcal (2) G-P(sol) polarization free energy of solvation -64.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds