Wall clock time and date at job start Tue Mar 31 2020 02:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33001 * 119.99916 * 2 1 4 4 C 1.50698 * 119.99865 * 180.02562 * 3 2 1 5 5 C 1.47104 * 119.99824 * 0.02562 * 3 2 1 6 6 O 1.21606 * 120.00071 * 350.39708 * 5 3 2 7 7 N 1.34772 * 119.99757 * 170.12628 * 5 3 2 8 8 C 1.46507 * 120.00039 * 354.58378 * 7 5 3 9 9 C 1.53004 * 109.46798 * 102.18450 * 8 7 5 10 10 C 1.53000 * 109.46958 * 186.01486 * 9 8 7 11 11 C 1.46495 * 120.00275 * 174.59117 * 7 5 3 12 12 H 1.08993 * 110.89107 * 192.20948 * 11 7 5 13 13 C 1.55155 * 111.00543 * 68.32125 * 11 7 5 14 14 C 1.54323 * 102.94365 * 277.43222 * 13 11 7 15 15 N 1.47026 * 107.27096 * 337.80558 * 14 13 11 16 16 C 1.36933 * 125.64622 * 178.97565 * 15 14 13 17 17 H 1.08003 * 119.99569 * 179.97438 * 16 15 14 18 18 C 1.38810 * 120.00199 * 359.97438 * 16 15 14 19 19 N 1.31619 * 120.00056 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99963 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47509 * 90.00163 * 20 18 16 22 22 H 1.48505 * 109.47019 * 210.00011 * 20 18 16 23 23 H 1.48498 * 109.47164 * 329.99710 * 20 18 16 24 24 C 1.47526 * 108.71429 * 358.94367 * 15 14 13 25 25 H 1.09006 * 109.46817 * 299.99805 * 1 2 3 26 26 H 1.08999 * 109.47445 * 59.99772 * 1 2 3 27 27 H 1.09000 * 109.46717 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00395 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46642 * 275.83578 * 4 3 2 30 30 H 1.08999 * 109.47518 * 35.83754 * 4 3 2 31 31 H 1.08998 * 109.47283 * 155.83999 * 4 3 2 32 32 H 1.08994 * 109.46979 * 222.18411 * 8 7 5 33 33 H 1.08999 * 109.47183 * 342.18661 * 8 7 5 34 34 H 1.08996 * 109.47044 * 306.01630 * 9 8 7 35 35 H 1.08999 * 109.47197 * 66.01640 * 9 8 7 36 36 H 1.09004 * 109.46981 * 300.00475 * 10 9 8 37 37 H 1.09001 * 109.47253 * 59.99558 * 10 9 8 38 38 H 1.08990 * 109.47252 * 180.02562 * 10 9 8 39 39 H 1.09002 * 110.71837 * 35.79610 * 13 11 7 40 40 H 1.09004 * 110.72108 * 158.89045 * 13 11 7 41 41 H 1.09000 * 109.88208 * 97.22580 * 14 13 11 42 42 H 1.08998 * 109.88354 * 218.23827 * 14 13 11 43 43 H 0.97000 * 119.99715 * 180.02562 * 19 18 16 44 44 H 1.09004 * 110.37026 * 265.30504 * 24 15 14 45 45 H 1.09000 * 110.41069 * 142.95046 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4364 2.4258 0.0006 6 8 0.2331 2.4331 -0.1746 7 7 2.0954 3.5842 0.2007 8 6 3.5217 3.5674 0.5352 9 6 4.3412 3.9193 -0.7080 10 6 5.8309 3.7561 -0.3998 11 6 1.3855 4.8604 0.0840 12 1 2.0868 5.6944 0.0600 13 6 0.3567 5.0316 1.2327 14 6 -0.8654 4.2390 0.7231 15 7 -0.7504 4.1523 -0.7401 16 6 -1.6274 3.5102 -1.5729 17 1 -1.4537 3.5040 -2.6388 18 6 -2.7397 2.8673 -1.0471 19 7 -2.9510 2.8744 0.2520 20 14 -3.9365 1.9920 -2.1834 21 1 -3.5114 0.5798 -2.3573 22 1 -5.2982 2.0298 -1.5920 23 1 -3.9515 2.6707 -3.5041 24 6 0.4660 4.8722 -1.1627 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.0471 -0.9353 -0.0004 29 1 4.0426 1.0471 1.0217 30 1 4.0421 0.3189 -0.6026 31 1 4.0422 2.0895 -0.4211 32 1 3.7195 4.2978 1.3196 33 1 3.8010 2.5736 0.8852 34 1 4.0643 3.2543 -1.5259 35 1 4.1406 4.9515 -0.9951 36 1 6.1077 4.4211 0.4183 37 1 6.0315 2.7239 -0.1125 38 1 6.4148 4.0072 -1.2852 39 1 0.7372 4.6005 2.1586 40 1 0.1066 6.0833 1.3728 41 1 -0.8645 3.2382 1.1550 42 1 -1.7841 4.7589 0.9948 43 1 -3.7281 2.4248 0.6193 44 1 0.2220 5.8965 -1.4445 45 1 0.9456 4.3535 -1.9927 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567682326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:05 Heat of formation + Delta-G solvation = 98.460484 kcal Electronic energy + Delta-G solvation = -24710.695495 eV Core-core repulsion = 21540.442425 eV Total energy + Delta-G solvation = -3170.253070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.10618 -36.82555 -36.24518 -33.93240 -32.74476 -31.40219 -29.73486 -28.73454 -27.14645 -26.07195 -24.25967 -23.98278 -22.35669 -21.44661 -19.76792 -19.39364 -17.53074 -16.41179 -16.03554 -15.43157 -15.25091 -14.71615 -14.32396 -13.69776 -13.58052 -13.50656 -13.30243 -13.14669 -12.80571 -12.29489 -12.10067 -11.73764 -11.69728 -11.60126 -11.52358 -11.34716 -11.25823 -10.94916 -10.71529 -10.69180 -10.65082 -10.48780 -10.21516 -9.89848 -9.69834 -9.57460 -9.33823 -8.58275 -8.20739 -8.05255 -7.62539 -6.14686 -5.34082 -2.58466 2.10236 3.56530 3.61666 3.62597 3.70944 4.20507 4.77567 4.85971 4.98339 5.09332 5.29482 5.32677 5.40939 5.53297 5.59024 5.63523 5.67430 5.78253 5.79408 5.86372 5.94727 5.98789 5.99771 6.03934 6.09058 6.17299 6.30622 6.36484 6.40431 6.65126 6.66347 6.69457 6.72687 6.77330 6.90537 7.06829 7.34783 7.51354 7.85159 8.01118 8.22282 8.34293 8.63808 9.42053 9.58765 10.20672 10.87891 11.78656 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.007182 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.247514 B = 3897.839381 C = 4623.769841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.087 4.087 3 C -0.191 4.191 4 C -0.153 4.153 5 C 0.488 3.512 6 O -0.394 6.394 7 N -0.610 5.610 8 C 0.072 3.928 9 C -0.148 4.148 10 C -0.152 4.152 11 C 0.136 3.864 12 H 0.076 0.924 13 C -0.160 4.160 14 C 0.195 3.805 15 N -0.565 5.565 16 C -0.190 4.190 17 H 0.064 0.936 18 C -0.004 4.004 19 N -0.918 5.918 20 Si 0.893 3.107 21 H -0.294 1.294 22 H -0.296 1.296 23 H -0.287 1.287 24 C 0.131 3.869 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.035 0.965 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.025 0.975 43 H 0.243 0.757 44 H 0.019 0.981 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.038 -0.270 1.965 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.107 4.107 3 C -0.194 4.194 4 C -0.208 4.208 5 C 0.275 3.725 6 O -0.261 6.261 7 N -0.348 5.348 8 C -0.051 4.051 9 C -0.186 4.186 10 C -0.209 4.209 11 C 0.031 3.969 12 H 0.094 0.906 13 C -0.200 4.200 14 C 0.071 3.929 15 N -0.290 5.290 16 C -0.319 4.319 17 H 0.082 0.918 18 C -0.199 4.199 19 N -0.567 5.567 20 Si 0.726 3.274 21 H -0.222 1.222 22 H -0.222 1.222 23 H -0.214 1.214 24 C 0.003 3.997 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.054 0.946 28 H 0.126 0.874 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.053 0.947 44 H 0.036 0.964 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 16.088 -0.401 1.875 16.202 hybrid contribution -0.346 -0.569 -0.574 0.879 sum 15.743 -0.970 1.301 15.826 Atomic orbital electron populations 1.20978 0.90869 0.99876 1.05534 1.23489 0.97553 0.95928 0.93689 1.21644 0.95370 0.94559 1.07861 1.21916 0.93174 1.04628 1.01090 1.18659 0.88911 0.83429 0.81519 1.91571 1.10492 1.84495 1.39494 1.47653 1.08335 1.05552 1.73253 1.22697 0.81589 1.04856 0.95940 1.22044 0.94930 1.02279 0.99388 1.21765 0.95822 1.01803 1.01559 1.22171 0.92918 0.84480 0.97334 0.90604 1.23366 0.99128 1.00214 0.97281 1.21091 0.90559 0.97336 0.83911 1.44149 1.22805 1.59637 1.02389 1.18756 0.99741 1.24984 0.88405 0.91814 1.24499 0.98562 1.01403 0.95432 1.69954 1.28823 1.48637 1.09302 0.86382 0.81165 0.80038 0.79804 1.22195 1.22245 1.21365 1.21765 0.88790 0.95224 0.93924 0.90250 0.88669 0.94558 0.87411 0.91691 0.92956 0.87434 0.92453 0.86521 0.91083 0.91625 0.92654 0.92522 0.92718 0.92684 0.92466 0.91869 0.95656 0.94681 0.96357 0.94963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.46 36.01 0.30 -2.00 16 2 C -0.09 -1.44 9.97 -36.12 -0.36 -1.80 16 3 C -0.19 -3.15 5.88 -102.84 -0.61 -3.75 16 4 C -0.15 -1.83 7.85 36.00 0.28 -1.55 16 5 C 0.49 9.65 7.02 -12.67 -0.09 9.56 16 6 O -0.39 -9.49 5.08 5.27 0.03 -9.47 16 7 N -0.61 -10.31 2.58 -165.06 -0.43 -10.74 16 8 C 0.07 0.89 4.82 -4.04 -0.02 0.87 16 9 C -0.15 -1.58 5.19 -26.73 -0.14 -1.72 16 10 C -0.15 -1.22 9.78 37.16 0.36 -0.86 16 11 C 0.14 2.44 3.73 -65.78 -0.25 2.20 16 12 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 13 C -0.16 -3.19 6.55 -24.90 -0.16 -3.35 16 14 C 0.20 4.98 4.21 -3.06 -0.01 4.97 16 15 N -0.56 -14.79 1.76 -169.99 -0.30 -15.09 16 16 C -0.19 -5.48 8.89 -15.06 -0.13 -5.62 16 17 H 0.06 1.84 7.83 -52.48 -0.41 1.43 16 18 C 0.00 -0.11 5.48 -17.43 -0.10 -0.21 16 19 N -0.92 -27.88 10.31 55.49 0.57 -27.31 16 20 Si 0.89 23.31 29.55 -169.99 -5.02 18.28 16 21 H -0.29 -7.68 7.11 56.52 0.40 -7.27 16 22 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 C 0.13 2.83 6.24 -2.47 -0.02 2.82 16 25 H 0.08 1.78 7.50 -51.93 -0.39 1.39 16 26 H 0.09 2.25 6.98 -51.93 -0.36 1.89 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.06 0.68 7.29 -51.93 -0.38 0.30 16 30 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 31 H 0.11 1.22 1.50 -51.93 -0.08 1.14 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.12 1.34 3.19 -79.61 -0.25 1.09 16 34 H 0.07 0.85 7.03 -51.93 -0.37 0.49 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.42 7.59 -51.93 -0.39 0.02 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.81 5.59 -51.93 -0.29 1.52 16 42 H 0.03 0.73 7.50 -51.93 -0.39 0.34 16 43 H 0.24 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.03 0.72 8.13 -51.93 -0.42 0.30 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -32.10 332.42 -8.58 -40.68 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -7.51 Total: -0.95 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.93 Total: -0.43 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.15 Total: -53.13 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.03 Total: -9.47 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.10 -8.58 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567682326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.144 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds