Wall clock time and date at job start Tue Mar 31 2020 02:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33001 * 119.99916 * 2 1 4 4 C 1.50698 * 119.99865 * 180.02562 * 3 2 1 5 5 C 1.47104 * 119.99824 * 0.02562 * 3 2 1 6 6 O 1.21606 * 120.00071 * 350.39708 * 5 3 2 7 7 N 1.34772 * 119.99757 * 170.12628 * 5 3 2 8 8 C 1.46507 * 120.00039 * 354.58378 * 7 5 3 9 9 C 1.53004 * 109.46798 * 102.18450 * 8 7 5 10 10 C 1.53000 * 109.46958 * 186.01486 * 9 8 7 11 11 C 1.46495 * 120.00275 * 174.59117 * 7 5 3 12 12 H 1.08993 * 110.89107 * 192.20948 * 11 7 5 13 13 C 1.55155 * 111.00543 * 68.32125 * 11 7 5 14 14 C 1.54323 * 102.94365 * 277.43222 * 13 11 7 15 15 N 1.47026 * 107.27096 * 337.80558 * 14 13 11 16 16 C 1.36933 * 125.64622 * 178.97565 * 15 14 13 17 17 H 1.08003 * 119.99569 * 179.97438 * 16 15 14 18 18 C 1.38810 * 120.00199 * 359.97438 * 16 15 14 19 19 N 1.31619 * 120.00056 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99963 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47509 * 90.00163 * 20 18 16 22 22 H 1.48505 * 109.47019 * 210.00011 * 20 18 16 23 23 H 1.48498 * 109.47164 * 329.99710 * 20 18 16 24 24 C 1.47526 * 108.71429 * 358.94367 * 15 14 13 25 25 H 1.09006 * 109.46817 * 299.99805 * 1 2 3 26 26 H 1.08999 * 109.47445 * 59.99772 * 1 2 3 27 27 H 1.09000 * 109.46717 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00395 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46642 * 275.83578 * 4 3 2 30 30 H 1.08999 * 109.47518 * 35.83754 * 4 3 2 31 31 H 1.08998 * 109.47283 * 155.83999 * 4 3 2 32 32 H 1.08994 * 109.46979 * 222.18411 * 8 7 5 33 33 H 1.08999 * 109.47183 * 342.18661 * 8 7 5 34 34 H 1.08996 * 109.47044 * 306.01630 * 9 8 7 35 35 H 1.08999 * 109.47197 * 66.01640 * 9 8 7 36 36 H 1.09004 * 109.46981 * 300.00475 * 10 9 8 37 37 H 1.09001 * 109.47253 * 59.99558 * 10 9 8 38 38 H 1.08990 * 109.47252 * 180.02562 * 10 9 8 39 39 H 1.09002 * 110.71837 * 35.79610 * 13 11 7 40 40 H 1.09004 * 110.72108 * 158.89045 * 13 11 7 41 41 H 1.09000 * 109.88208 * 97.22580 * 14 13 11 42 42 H 1.08998 * 109.88354 * 218.23827 * 14 13 11 43 43 H 0.97000 * 119.99715 * 180.02562 * 19 18 16 44 44 H 1.09004 * 110.37026 * 265.30504 * 24 15 14 45 45 H 1.09000 * 110.41069 * 142.95046 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4364 2.4258 0.0006 6 8 0.2331 2.4331 -0.1746 7 7 2.0954 3.5842 0.2007 8 6 3.5217 3.5674 0.5352 9 6 4.3412 3.9193 -0.7080 10 6 5.8309 3.7561 -0.3998 11 6 1.3855 4.8604 0.0840 12 1 2.0868 5.6944 0.0600 13 6 0.3567 5.0316 1.2327 14 6 -0.8654 4.2390 0.7231 15 7 -0.7504 4.1523 -0.7401 16 6 -1.6274 3.5102 -1.5729 17 1 -1.4537 3.5040 -2.6388 18 6 -2.7397 2.8673 -1.0471 19 7 -2.9510 2.8744 0.2520 20 14 -3.9365 1.9920 -2.1834 21 1 -3.5114 0.5798 -2.3573 22 1 -5.2982 2.0298 -1.5920 23 1 -3.9515 2.6707 -3.5041 24 6 0.4660 4.8722 -1.1627 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.0471 -0.9353 -0.0004 29 1 4.0426 1.0471 1.0217 30 1 4.0421 0.3189 -0.6026 31 1 4.0422 2.0895 -0.4211 32 1 3.7195 4.2978 1.3196 33 1 3.8010 2.5736 0.8852 34 1 4.0643 3.2543 -1.5259 35 1 4.1406 4.9515 -0.9951 36 1 6.1077 4.4211 0.4183 37 1 6.0315 2.7239 -0.1125 38 1 6.4148 4.0072 -1.2852 39 1 0.7372 4.6005 2.1586 40 1 0.1066 6.0833 1.3728 41 1 -0.8645 3.2382 1.1550 42 1 -1.7841 4.7589 0.9948 43 1 -3.7281 2.4248 0.6193 44 1 0.2220 5.8965 -1.4445 45 1 0.9456 4.3535 -1.9927 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567682326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:04 Heat of formation + Delta-G solvation = 79.857626 kcal Electronic energy + Delta-G solvation = -24711.502175 eV Core-core repulsion = 21540.442425 eV Total energy + Delta-G solvation = -3171.059750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53436 -38.42043 -37.53403 -35.49379 -34.28323 -32.99386 -31.21079 -30.51298 -28.84872 -27.16067 -26.30572 -25.17317 -23.86864 -22.36070 -21.74483 -20.89084 -19.05439 -18.36638 -17.28965 -16.92551 -16.59155 -16.31299 -16.04988 -15.62241 -15.00371 -14.81848 -14.48041 -14.21171 -14.17095 -13.63171 -13.51768 -13.48934 -13.21148 -13.02449 -12.89272 -12.81406 -12.70073 -12.65832 -12.35407 -12.26356 -12.00159 -11.92040 -11.84165 -11.58742 -11.52518 -11.31577 -10.86834 -10.53268 -9.78794 -9.62021 -9.15343 -8.20314 -7.58874 -4.81850 0.75915 1.42179 1.44270 1.50803 2.40399 2.61325 2.76860 3.58715 3.80482 3.88560 4.01976 4.04688 4.10236 4.24687 4.33904 4.39922 4.44775 4.54998 4.60331 4.73045 4.76792 4.78419 4.84122 4.93504 4.97006 4.99111 5.00361 5.05964 5.12795 5.14944 5.20535 5.33198 5.34967 5.39905 5.56447 5.60882 5.67158 5.86000 5.89401 6.10147 6.16200 6.46436 6.95326 7.36799 7.95808 8.07631 8.72196 9.52411 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.007182 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.247514 B = 3897.839381 C = 4623.769841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.094 4.094 3 C -0.190 4.190 4 C -0.147 4.147 5 C 0.472 3.528 6 O -0.450 6.450 7 N -0.608 5.608 8 C 0.066 3.934 9 C -0.141 4.141 10 C -0.147 4.147 11 C 0.149 3.851 12 H 0.122 0.878 13 C -0.147 4.147 14 C 0.209 3.791 15 N -0.577 5.577 16 C -0.190 4.190 17 H 0.056 0.944 18 C -0.056 4.056 19 N -0.942 5.942 20 Si 0.949 3.051 21 H -0.296 1.296 22 H -0.299 1.299 23 H -0.277 1.277 24 C 0.126 3.874 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.150 0.850 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.026 0.974 42 H -0.022 1.022 43 H 0.232 0.768 44 H 0.029 0.971 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.005 -0.090 1.979 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C -0.193 4.193 4 C -0.202 4.202 5 C 0.259 3.741 6 O -0.320 6.320 7 N -0.344 5.344 8 C -0.055 4.055 9 C -0.180 4.180 10 C -0.204 4.204 11 C 0.044 3.956 12 H 0.140 0.860 13 C -0.186 4.186 14 C 0.084 3.916 15 N -0.302 5.302 16 C -0.320 4.320 17 H 0.074 0.926 18 C -0.248 4.248 19 N -0.593 5.593 20 Si 0.780 3.220 21 H -0.224 1.224 22 H -0.226 1.226 23 H -0.202 1.202 24 C 0.000 4.000 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.168 0.832 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.095 0.905 33 H 0.148 0.852 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.043 0.957 42 H -0.004 1.004 43 H 0.042 0.958 44 H 0.046 0.954 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 20.133 -0.190 1.874 20.221 hybrid contribution -1.516 -0.597 -0.604 1.737 sum 18.618 -0.786 1.270 18.677 Atomic orbital electron populations 1.20664 0.94039 0.99520 1.01580 1.23601 0.95289 0.97992 0.94466 1.21921 0.98030 0.92757 1.06565 1.21957 0.89163 1.05964 1.03123 1.19417 0.88787 0.85266 0.80584 1.91575 1.12877 1.85586 1.41971 1.47759 1.10253 1.04293 1.72076 1.23054 0.78617 1.06513 0.97342 1.21955 0.96482 1.01692 0.97856 1.21733 0.93550 1.02870 1.02288 1.22088 0.92979 0.86582 0.93913 0.86001 1.23205 0.97001 1.00327 0.98112 1.20716 0.91339 0.95655 0.83861 1.44260 1.23901 1.59521 1.02505 1.18938 1.00121 1.24489 0.88498 0.92564 1.25104 1.00357 1.02742 0.96591 1.70194 1.28793 1.49610 1.10722 0.85491 0.78961 0.78855 0.78643 1.22414 1.22619 1.20232 1.21940 0.87956 0.94630 0.95507 0.94103 0.93323 0.92776 0.83213 0.89112 0.91033 0.86698 0.90508 0.85228 0.92599 0.91884 0.91568 0.91412 0.92158 0.91675 0.90480 0.95656 1.00406 0.95833 0.95369 0.96004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.22 8.46 71.24 0.60 -3.62 16 2 C -0.09 -3.01 9.97 24.52 0.24 -2.76 16 3 C -0.19 -5.92 5.88 -18.70 -0.11 -6.03 16 4 C -0.15 -2.88 7.85 71.24 0.56 -2.33 16 5 C 0.47 18.57 7.02 86.57 0.61 19.18 16 6 O -0.45 -22.67 5.08 -4.05 -0.02 -22.69 16 7 N -0.61 -19.26 2.58 -794.38 -2.05 -21.31 16 8 C 0.07 1.35 4.82 86.38 0.42 1.77 16 9 C -0.14 -2.45 5.19 30.60 0.16 -2.29 16 10 C -0.15 -1.67 9.78 71.98 0.70 -0.96 16 11 C 0.15 5.06 3.73 46.38 0.17 5.23 16 12 H 0.12 3.11 8.01 -2.39 -0.02 3.09 16 13 C -0.15 -5.71 6.55 31.78 0.21 -5.50 16 14 C 0.21 11.17 4.21 86.73 0.37 11.53 16 15 N -0.58 -31.39 1.76 -691.72 -1.21 -32.60 16 16 C -0.19 -11.51 8.89 84.03 0.75 -10.76 16 17 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 18 C -0.06 -3.42 5.48 84.86 0.47 -2.96 16 19 N -0.94 -60.93 10.31 21.65 0.22 -60.70 16 20 Si 0.95 50.16 29.55 68.60 2.03 52.19 16 21 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 22 H -0.30 -15.86 7.11 99.48 0.71 -15.15 16 23 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 24 C 0.13 5.45 6.24 86.84 0.54 5.99 16 25 H 0.04 1.98 7.50 -2.38 -0.02 1.96 16 26 H 0.05 2.46 6.98 -2.39 -0.02 2.45 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 28 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 29 H 0.09 1.39 7.29 -2.38 -0.02 1.37 16 30 H 0.07 1.20 8.11 -2.39 -0.02 1.18 16 31 H 0.12 2.11 1.50 -2.39 0.00 2.11 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.13 2.38 3.19 -28.39 -0.09 2.29 16 34 H 0.06 1.16 7.03 -2.39 -0.02 1.14 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.07 0.64 7.59 -2.39 -0.02 0.62 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 40 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 41 H 0.03 1.56 5.59 -2.39 -0.01 1.54 16 42 H -0.02 -1.36 7.50 -2.39 -0.02 -1.37 16 43 H 0.23 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.02 0.98 8.13 -2.39 -0.02 0.96 16 Total: -1.00 -77.36 332.42 5.53 -71.83 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.88 Total: 6.80 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 5.68 Total: 6.49 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -3.04 Total: -114.61 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.02 Total: -22.69 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.03 Total: 52.19 kcal Total: -77.36 5.53 -71.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567682326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.690 kcal (2) G-P(sol) polarization free energy of solvation -77.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds