Wall clock time and date at job start Tue Mar 31 2020 02:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32992 * 120.00176 * 2 1 4 4 C 1.50701 * 120.00152 * 359.97438 * 3 2 1 5 5 C 1.47102 * 120.00256 * 180.02562 * 3 2 1 6 6 O 1.21611 * 119.99552 * 319.32122 * 5 3 2 7 7 N 1.34781 * 120.00227 * 139.32150 * 5 3 2 8 8 C 1.46496 * 119.99757 * 6.17453 * 7 5 3 9 9 C 1.53001 * 109.46940 * 277.96159 * 8 7 5 10 10 C 1.53002 * 109.47029 * 180.02562 * 9 8 7 11 11 C 1.46500 * 119.99761 * 185.89744 * 7 5 3 12 12 H 1.08993 * 110.88413 * 190.27563 * 11 7 5 13 13 C 1.55154 * 111.00506 * 66.39496 * 11 7 5 14 14 C 1.54333 * 102.93842 * 277.42594 * 13 11 7 15 15 N 1.47018 * 107.27415 * 337.80520 * 14 13 11 16 16 C 1.36935 * 125.65181 * 178.97715 * 15 14 13 17 17 H 1.07997 * 120.00440 * 179.97438 * 16 15 14 18 18 C 1.38818 * 119.99623 * 359.97438 * 16 15 14 19 19 N 1.31622 * 120.00201 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99786 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46994 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47165 * 120.00050 * 20 18 16 23 23 H 1.48507 * 109.47056 * 240.00071 * 20 18 16 24 24 C 1.47524 * 108.71211 * 358.94667 * 15 14 13 25 25 H 1.09001 * 109.46805 * 300.00348 * 1 2 3 26 26 H 1.09001 * 109.47013 * 59.99558 * 1 2 3 27 27 H 1.08993 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00202 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47154 * 271.04895 * 4 3 2 30 30 H 1.09001 * 109.47267 * 31.04055 * 4 3 2 31 31 H 1.08992 * 109.47513 * 151.04568 * 4 3 2 32 32 H 1.08998 * 109.47673 * 37.96196 * 8 7 5 33 33 H 1.09001 * 109.47134 * 157.96544 * 8 7 5 34 34 H 1.09003 * 109.47421 * 300.00319 * 9 8 7 35 35 H 1.09001 * 109.47418 * 60.00256 * 9 8 7 36 36 H 1.09001 * 109.47471 * 60.00124 * 10 9 8 37 37 H 1.09006 * 109.46708 * 180.02562 * 10 9 8 38 38 H 1.08998 * 109.47247 * 299.99831 * 10 9 8 39 39 H 1.08997 * 110.72199 * 35.78250 * 13 11 7 40 40 H 1.08999 * 110.72308 * 158.88833 * 13 11 7 41 41 H 1.09003 * 109.88086 * 97.22814 * 14 13 11 42 42 H 1.08999 * 109.87714 * 218.23271 * 14 13 11 43 43 H 0.96993 * 120.00063 * 179.97438 * 19 18 16 44 44 H 1.09007 * 110.37269 * 265.30360 * 24 15 14 45 45 H 1.09004 * 110.40937 * 142.95403 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4186 2.4569 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2513 0.3529 0.6855 7 7 4.3167 2.0371 -0.7614 8 6 3.5903 3.0856 -1.4820 9 6 3.0314 2.5143 -2.7867 10 6 2.2733 3.6094 -3.5395 11 6 5.7758 1.9546 -0.8630 12 1 6.1811 2.8360 -1.3598 13 6 6.2100 0.6560 -1.5925 14 6 6.1706 -0.4012 -0.4688 15 7 6.2855 0.3158 0.8095 16 6 6.2713 -0.2601 2.0517 17 1 6.3630 0.3562 2.9338 18 6 6.1390 -1.6362 2.1772 19 7 6.0278 -2.3875 1.1022 20 14 6.1204 -2.4220 3.8719 21 1 6.2620 -1.3676 4.9079 22 1 4.8367 -3.1418 4.0696 23 1 7.2484 -3.3813 3.9851 24 6 6.4193 1.7586 0.5324 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.0470 -0.9353 0.0004 29 1 1.2210 2.7619 -1.0282 30 1 0.4741 2.3315 0.5290 31 1 2.0154 3.2212 0.4969 32 1 2.7696 3.4496 -0.8638 33 1 4.2686 3.9086 -1.7069 34 1 3.8520 2.1502 -3.4049 35 1 2.3531 1.6912 -2.5619 36 1 2.9519 4.4322 -3.7645 37 1 1.8747 3.2022 -4.4688 38 1 1.4527 3.9738 -2.9216 39 1 5.5043 0.4039 -2.3840 40 1 7.2180 0.7580 -1.9945 41 1 5.2270 -0.9457 -0.5051 42 1 7.0034 -1.0951 -0.5835 43 1 5.9358 -3.3491 1.1899 44 1 7.4709 2.0445 0.5087 45 1 5.8839 2.3410 1.2823 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567682329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:13 Heat of formation + Delta-G solvation = 60.079631 kcal Electronic energy + Delta-G solvation = -24363.721153 eV Core-core repulsion = 21191.803765 eV Total energy + Delta-G solvation = -3171.917388 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.90264 -36.73066 -35.73617 -34.51784 -32.73693 -31.37944 -29.37992 -28.70810 -27.13288 -26.35370 -25.13029 -24.21578 -22.11846 -21.21516 -19.76055 -19.00261 -17.55101 -16.53481 -16.15174 -15.74230 -14.87722 -14.59293 -14.44970 -14.28171 -13.60451 -13.51840 -13.39428 -13.02672 -12.63595 -12.48471 -12.43668 -12.10683 -11.79945 -11.70750 -11.62653 -11.52958 -11.33710 -11.11510 -10.96635 -10.68307 -10.63858 -10.52874 -10.37010 -9.86065 -9.82688 -9.60134 -9.33160 -8.71417 -8.37120 -8.19058 -7.65923 -6.13586 -5.32822 -2.56141 2.11175 3.58707 3.63516 3.64357 3.65712 3.99202 4.80309 4.92113 5.00785 5.13013 5.27226 5.35987 5.39539 5.44497 5.48127 5.53312 5.61041 5.62196 5.72686 5.76861 5.80359 5.86611 5.94175 5.99068 5.99792 6.00537 6.07656 6.16913 6.20382 6.36099 6.41615 6.64496 6.71404 6.73866 6.83193 6.89398 7.02262 7.48327 7.85831 7.97406 8.17875 8.26884 8.64075 9.35985 9.59988 10.22297 10.89241 11.80958 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.006985 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.828851 B = 4007.805889 C = 4921.791262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.166 4.166 4 C -0.116 4.116 5 C 0.496 3.504 6 O -0.401 6.401 7 N -0.609 5.609 8 C 0.092 3.908 9 C -0.144 4.144 10 C -0.148 4.148 11 C 0.133 3.867 12 H 0.078 0.922 13 C -0.160 4.160 14 C 0.193 3.807 15 N -0.564 5.564 16 C -0.182 4.182 17 H 0.066 0.934 18 C -0.010 4.010 19 N -0.924 5.924 20 Si 0.898 3.102 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.297 1.297 24 C 0.131 3.869 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.029 0.971 43 H 0.242 0.758 44 H 0.021 0.979 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.989 12.582 -9.180 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.130 4.130 3 C -0.170 4.170 4 C -0.172 4.172 5 C 0.281 3.719 6 O -0.266 6.266 7 N -0.346 5.346 8 C -0.032 4.032 9 C -0.183 4.183 10 C -0.206 4.206 11 C 0.029 3.971 12 H 0.096 0.904 13 C -0.199 4.199 14 C 0.068 3.932 15 N -0.289 5.289 16 C -0.311 4.311 17 H 0.084 0.916 18 C -0.205 4.205 19 N -0.574 5.574 20 Si 0.731 3.269 21 H -0.211 1.211 22 H -0.224 1.224 23 H -0.225 1.225 24 C 0.003 3.997 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.038 0.962 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.646 11.890 -8.635 17.577 hybrid contribution -0.149 -0.415 0.699 0.827 sum -9.795 11.474 -7.935 17.046 Atomic orbital electron populations 1.20856 0.93040 1.02249 1.01600 1.23286 0.95491 0.97976 0.96228 1.21624 0.94385 0.95632 1.05342 1.21077 0.99373 0.95002 1.01777 1.18733 0.87004 0.83433 0.82737 1.91680 1.65543 1.34287 1.35113 1.47745 1.05781 1.31776 1.49325 1.22120 0.97533 0.90301 0.93214 1.22017 1.00339 0.98800 0.97099 1.21719 1.00092 0.98788 1.00014 1.22283 0.79609 0.97159 0.98088 0.90418 1.23378 0.99401 0.97621 0.99533 1.21044 1.00411 0.90314 0.81408 1.44111 1.83775 0.98752 1.02260 1.18824 1.39551 0.89837 0.82846 0.91626 1.24541 1.03699 0.96124 0.96127 1.69960 1.58625 1.03361 1.25445 0.86211 0.76850 0.79203 0.84613 1.21072 1.22396 1.22465 1.21768 0.95855 0.89035 0.93045 0.91485 0.91697 0.92033 0.86157 0.90838 0.92003 0.91600 0.89026 0.91527 0.91923 0.91560 0.92832 0.92869 0.92831 0.92628 0.92260 0.92847 0.95331 0.94754 0.96191 0.94835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 8.93 36.01 0.32 -1.09 16 2 C -0.11 -1.78 9.82 -36.13 -0.35 -2.14 16 3 C -0.17 -2.71 4.51 -102.85 -0.46 -3.17 16 4 C -0.12 -1.37 7.37 36.01 0.27 -1.11 16 5 C 0.50 9.98 6.67 -12.66 -0.08 9.90 16 6 O -0.40 -10.33 8.85 5.27 0.05 -10.28 16 7 N -0.61 -10.34 2.58 -165.06 -0.43 -10.77 16 8 C 0.09 1.12 5.01 -4.04 -0.02 1.10 16 9 C -0.14 -1.61 5.30 -26.73 -0.14 -1.75 16 10 C -0.15 -1.25 9.88 37.16 0.37 -0.88 16 11 C 0.13 2.42 3.81 -65.78 -0.25 2.17 16 12 H 0.08 1.16 7.75 -51.93 -0.40 0.76 16 13 C -0.16 -3.19 6.53 -24.89 -0.16 -3.36 16 14 C 0.19 5.03 4.22 -3.06 -0.01 5.01 16 15 N -0.56 -15.22 1.73 -169.99 -0.29 -15.51 16 16 C -0.18 -5.43 8.71 -15.06 -0.13 -5.56 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 19 N -0.92 -29.09 10.31 55.49 0.57 -28.51 16 20 Si 0.90 24.03 29.55 -169.99 -5.02 19.00 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 23 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 24 C 0.13 2.89 6.17 -2.47 -0.02 2.87 16 25 H 0.07 0.73 7.40 -51.93 -0.38 0.35 16 26 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.12 2.32 7.98 -52.49 -0.42 1.91 16 29 H 0.07 0.73 5.42 -51.93 -0.28 0.45 16 30 H 0.06 0.65 6.53 -51.93 -0.34 0.31 16 31 H 0.07 0.78 6.86 -51.93 -0.36 0.43 16 32 H 0.09 1.02 3.36 -51.93 -0.17 0.85 16 33 H 0.07 0.72 7.76 -51.93 -0.40 0.32 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.83 6.72 -51.93 -0.35 0.48 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.40 7.64 -51.93 -0.40 0.00 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.57 5.89 -51.93 -0.31 1.27 16 42 H 0.03 0.83 7.50 -51.93 -0.39 0.44 16 43 H 0.24 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -34.49 336.93 -8.38 -42.87 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -7.55 Total: -3.47 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.78 Total: 1.59 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.15 Total: -54.79 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.05 Total: -10.28 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.02 Total: 19.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.49 -8.38 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567682329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.946 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds