Wall clock time and date at job start Tue Mar 31 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32992 * 120.00176 * 2 1 4 4 C 1.50701 * 120.00152 * 359.97438 * 3 2 1 5 5 C 1.47102 * 120.00256 * 180.02562 * 3 2 1 6 6 O 1.21611 * 119.99552 * 319.32122 * 5 3 2 7 7 N 1.34781 * 120.00227 * 139.32150 * 5 3 2 8 8 C 1.46496 * 119.99757 * 6.17453 * 7 5 3 9 9 C 1.53001 * 109.46940 * 277.96159 * 8 7 5 10 10 C 1.53002 * 109.47029 * 180.02562 * 9 8 7 11 11 C 1.46500 * 119.99761 * 185.89744 * 7 5 3 12 12 H 1.08993 * 110.88413 * 190.27563 * 11 7 5 13 13 C 1.55154 * 111.00506 * 66.39496 * 11 7 5 14 14 C 1.54333 * 102.93842 * 277.42594 * 13 11 7 15 15 N 1.47018 * 107.27415 * 337.80520 * 14 13 11 16 16 C 1.36935 * 125.65181 * 178.97715 * 15 14 13 17 17 H 1.07997 * 120.00440 * 179.97438 * 16 15 14 18 18 C 1.38818 * 119.99623 * 359.97438 * 16 15 14 19 19 N 1.31622 * 120.00201 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99786 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46994 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47165 * 120.00050 * 20 18 16 23 23 H 1.48507 * 109.47056 * 240.00071 * 20 18 16 24 24 C 1.47524 * 108.71211 * 358.94667 * 15 14 13 25 25 H 1.09001 * 109.46805 * 300.00348 * 1 2 3 26 26 H 1.09001 * 109.47013 * 59.99558 * 1 2 3 27 27 H 1.08993 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00202 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47154 * 271.04895 * 4 3 2 30 30 H 1.09001 * 109.47267 * 31.04055 * 4 3 2 31 31 H 1.08992 * 109.47513 * 151.04568 * 4 3 2 32 32 H 1.08998 * 109.47673 * 37.96196 * 8 7 5 33 33 H 1.09001 * 109.47134 * 157.96544 * 8 7 5 34 34 H 1.09003 * 109.47421 * 300.00319 * 9 8 7 35 35 H 1.09001 * 109.47418 * 60.00256 * 9 8 7 36 36 H 1.09001 * 109.47471 * 60.00124 * 10 9 8 37 37 H 1.09006 * 109.46708 * 180.02562 * 10 9 8 38 38 H 1.08998 * 109.47247 * 299.99831 * 10 9 8 39 39 H 1.08997 * 110.72199 * 35.78250 * 13 11 7 40 40 H 1.08999 * 110.72308 * 158.88833 * 13 11 7 41 41 H 1.09003 * 109.88086 * 97.22814 * 14 13 11 42 42 H 1.08999 * 109.87714 * 218.23271 * 14 13 11 43 43 H 0.96993 * 120.00063 * 179.97438 * 19 18 16 44 44 H 1.09007 * 110.37269 * 265.30360 * 24 15 14 45 45 H 1.09004 * 110.40937 * 142.95403 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4186 2.4569 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2513 0.3529 0.6855 7 7 4.3167 2.0371 -0.7614 8 6 3.5903 3.0856 -1.4820 9 6 3.0314 2.5143 -2.7867 10 6 2.2733 3.6094 -3.5395 11 6 5.7758 1.9546 -0.8630 12 1 6.1811 2.8360 -1.3598 13 6 6.2100 0.6560 -1.5925 14 6 6.1706 -0.4012 -0.4688 15 7 6.2855 0.3158 0.8095 16 6 6.2713 -0.2601 2.0517 17 1 6.3630 0.3562 2.9338 18 6 6.1390 -1.6362 2.1772 19 7 6.0278 -2.3875 1.1022 20 14 6.1204 -2.4220 3.8719 21 1 6.2620 -1.3676 4.9079 22 1 4.8367 -3.1418 4.0696 23 1 7.2484 -3.3813 3.9851 24 6 6.4193 1.7586 0.5324 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.0470 -0.9353 0.0004 29 1 1.2210 2.7619 -1.0282 30 1 0.4741 2.3315 0.5290 31 1 2.0154 3.2212 0.4969 32 1 2.7696 3.4496 -0.8638 33 1 4.2686 3.9086 -1.7069 34 1 3.8520 2.1502 -3.4049 35 1 2.3531 1.6912 -2.5619 36 1 2.9519 4.4322 -3.7645 37 1 1.8747 3.2022 -4.4688 38 1 1.4527 3.9738 -2.9216 39 1 5.5043 0.4039 -2.3840 40 1 7.2180 0.7580 -1.9945 41 1 5.2270 -0.9457 -0.5051 42 1 7.0034 -1.0951 -0.5835 43 1 5.9358 -3.3491 1.1899 44 1 7.4709 2.0445 0.5087 45 1 5.8839 2.3410 1.2823 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567682329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:12 Heat of formation + Delta-G solvation = 38.794162 kcal Electronic energy + Delta-G solvation = -24364.644161 eV Core-core repulsion = 21191.803765 eV Total energy + Delta-G solvation = -3172.840395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39590 -38.34077 -37.07096 -35.93862 -34.37083 -32.96345 -30.97932 -30.19330 -28.82916 -27.45605 -26.37362 -26.11797 -23.50015 -22.26501 -21.79038 -20.45134 -19.00279 -18.53413 -17.49557 -17.13263 -16.60843 -16.23881 -15.93086 -15.64172 -15.58574 -14.57277 -14.44584 -14.24335 -13.92232 -13.69594 -13.59526 -13.45602 -13.31025 -13.21103 -13.02714 -12.87065 -12.78390 -12.73077 -12.36584 -12.21902 -12.16414 -11.96294 -11.83337 -11.70247 -11.63986 -11.46412 -11.15292 -10.54007 -10.11401 -9.69510 -9.20362 -8.26378 -7.63391 -4.85323 0.81699 1.39792 1.42474 1.50812 2.28531 2.56503 2.59923 3.54774 3.74607 3.87458 4.00768 4.10280 4.14572 4.23471 4.33720 4.35783 4.38760 4.49841 4.53894 4.67701 4.70981 4.74301 4.84453 4.86235 4.90663 4.94901 4.99814 5.03800 5.07933 5.09047 5.16682 5.16978 5.32901 5.36608 5.52279 5.55487 5.62768 5.80308 5.84478 6.00838 6.09879 6.40951 6.86235 7.32455 7.86990 8.03793 8.68376 9.49366 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.006985 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.828851 B = 4007.805889 C = 4921.791262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.121 4.121 3 C -0.171 4.171 4 C -0.107 4.107 5 C 0.485 3.515 6 O -0.474 6.474 7 N -0.605 5.605 8 C 0.085 3.915 9 C -0.138 4.138 10 C -0.142 4.142 11 C 0.145 3.855 12 H 0.130 0.870 13 C -0.145 4.145 14 C 0.207 3.793 15 N -0.577 5.577 16 C -0.181 4.181 17 H 0.061 0.939 18 C -0.072 4.072 19 N -0.952 5.952 20 Si 0.959 3.041 21 H -0.272 1.272 22 H -0.303 1.303 23 H -0.295 1.295 24 C 0.124 3.876 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.009 0.991 42 H -0.018 1.018 43 H 0.232 0.768 44 H 0.035 0.965 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.560 16.258 -10.351 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 C -0.175 4.175 4 C -0.163 4.163 5 C 0.272 3.728 6 O -0.345 6.345 7 N -0.340 5.340 8 C -0.036 4.036 9 C -0.177 4.177 10 C -0.200 4.200 11 C 0.040 3.960 12 H 0.148 0.852 13 C -0.185 4.185 14 C 0.082 3.918 15 N -0.301 5.301 16 C -0.311 4.311 17 H 0.079 0.921 18 C -0.263 4.263 19 N -0.605 5.605 20 Si 0.790 3.210 21 H -0.196 1.196 22 H -0.232 1.232 23 H -0.222 1.222 24 C -0.002 4.002 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.027 0.973 42 H 0.000 1.000 43 H 0.041 0.959 44 H 0.052 0.948 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -11.226 15.656 -9.839 21.632 hybrid contribution 0.335 -1.503 1.031 1.853 sum -10.891 14.153 -8.809 19.913 Atomic orbital electron populations 1.20858 0.89165 1.03163 1.03465 1.23350 0.98115 0.96025 0.96617 1.21726 0.92501 0.97904 1.05321 1.21102 0.99425 0.92031 1.03753 1.19476 0.88798 0.82597 0.81929 1.91643 1.67448 1.37009 1.38356 1.47843 1.05523 1.31979 1.48664 1.22491 0.98321 0.89401 0.93367 1.21932 0.99884 0.99272 0.96605 1.21673 1.00402 0.97932 0.99947 1.22251 0.80488 0.97941 0.95273 0.85203 1.23208 1.01174 0.96574 0.97503 1.20659 0.96130 0.91374 0.83641 1.44246 1.83185 1.01089 1.01555 1.19064 1.37815 0.90076 0.84186 0.92150 1.25262 1.04837 0.96832 0.99380 1.70216 1.60386 1.02699 1.27206 0.85245 0.76210 0.78342 0.81165 1.19636 1.23154 1.22247 1.21985 0.96793 0.86093 0.95327 0.89962 0.88933 0.91836 0.91255 0.88171 0.90067 0.91282 0.87374 0.88846 0.93151 0.93315 0.91622 0.92565 0.91334 0.91815 0.89997 0.97272 0.99988 0.95859 0.94793 0.95750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.38 8.93 71.24 0.64 -1.74 16 2 C -0.12 -4.01 9.82 24.52 0.24 -3.77 16 3 C -0.17 -5.47 4.51 -18.70 -0.08 -5.55 16 4 C -0.11 -2.15 7.37 71.24 0.52 -1.63 16 5 C 0.49 19.76 6.67 86.57 0.58 20.34 16 6 O -0.47 -25.71 8.85 -4.07 -0.04 -25.74 16 7 N -0.60 -19.44 2.58 -794.39 -2.05 -21.49 16 8 C 0.09 1.75 5.01 86.38 0.43 2.18 16 9 C -0.14 -2.63 5.30 30.60 0.16 -2.47 16 10 C -0.14 -1.74 9.88 71.98 0.71 -1.02 16 11 C 0.15 4.96 3.81 46.38 0.18 5.13 16 12 H 0.13 3.19 7.75 -2.39 -0.02 3.17 16 13 C -0.15 -5.73 6.53 31.78 0.21 -5.52 16 14 C 0.21 11.39 4.22 86.73 0.37 11.75 16 15 N -0.58 -32.28 1.73 -691.71 -1.20 -33.48 16 16 C -0.18 -11.29 8.71 84.04 0.73 -10.56 16 17 H 0.06 3.72 7.83 -2.91 -0.02 3.69 16 18 C -0.07 -4.59 5.49 84.86 0.47 -4.12 16 19 N -0.95 -64.00 10.31 21.65 0.22 -63.78 16 20 Si 0.96 51.68 29.55 68.60 2.03 53.71 16 21 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.30 -16.54 7.11 99.48 0.71 -15.83 16 23 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 24 C 0.12 5.44 6.17 86.84 0.54 5.97 16 25 H 0.08 1.56 7.40 -2.39 -0.02 1.54 16 26 H 0.09 1.51 8.10 -2.39 -0.02 1.50 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.07 2.97 7.98 -2.91 -0.02 2.95 16 29 H 0.10 1.49 5.42 -2.39 -0.01 1.48 16 30 H 0.08 1.37 6.53 -2.39 -0.02 1.35 16 31 H 0.07 1.37 6.86 -2.39 -0.02 1.36 16 32 H 0.11 1.91 3.36 -2.39 -0.01 1.90 16 33 H 0.09 1.49 7.76 -2.39 -0.02 1.47 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.11 6.72 -2.39 -0.02 1.09 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.07 0.66 7.64 -2.39 -0.02 0.64 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.08 2.86 8.14 -2.39 -0.02 2.85 16 41 H 0.01 0.59 5.89 -2.39 -0.01 0.57 16 42 H -0.02 -1.12 7.50 -2.39 -0.02 -1.14 16 43 H 0.23 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -83.80 336.93 5.61 -78.19 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 0.96 Total: 3.61 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 5.68 Total: 8.98 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -3.02 Total: -118.74 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.04 Total: -25.74 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.03 Total: 53.71 kcal Total: -83.80 5.61 -78.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567682329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.981 kcal (2) G-P(sol) polarization free energy of solvation -83.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds