Wall clock time and date at job start Tue Mar 31 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 120.00091 * 2 1 4 4 H 1.08997 * 109.46987 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.46695 * 239.99870 * 3 2 1 6 6 C 1.52999 * 109.47522 * 64.99740 * 5 3 2 7 7 C 1.53000 * 109.47214 * 119.99867 * 3 2 1 8 8 C 1.50695 * 109.47076 * 294.99668 * 7 3 2 9 9 O 1.21282 * 120.00154 * 0.02562 * 8 7 3 10 10 N 1.34774 * 120.00185 * 180.02562 * 8 7 3 11 11 C 1.46494 * 120.00524 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.52033 * 325.08101 * 11 10 8 13 13 C 1.53043 * 109.50034 * 205.00085 * 11 10 8 14 14 C 1.53042 * 109.52588 * 178.67666 * 13 11 10 15 15 C 1.53185 * 109.31801 * 61.36883 * 14 13 11 16 16 N 1.46935 * 108.77643 * 305.36702 * 15 14 13 17 17 C 1.36931 * 120.63006 * 233.58574 * 16 15 14 18 18 H 1.08001 * 119.99988 * 27.68172 * 17 16 15 19 19 C 1.38809 * 119.99891 * 207.68249 * 17 16 15 20 20 N 1.31618 * 120.00290 * 17.36942 * 19 17 16 21 21 Si 1.86802 * 120.00128 * 197.36428 * 19 17 16 22 22 H 1.48501 * 109.46973 * 89.99972 * 21 19 17 23 23 H 1.48494 * 109.47222 * 210.00108 * 21 19 17 24 24 H 1.48497 * 109.47200 * 330.00246 * 21 19 17 25 25 C 1.46926 * 118.73705 * 53.60433 * 16 15 14 26 26 H 1.08000 * 119.99802 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99595 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00339 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47413 * 184.99956 * 5 3 2 30 30 H 1.08999 * 109.47494 * 304.99682 * 5 3 2 31 31 H 1.08995 * 109.47438 * 300.00025 * 6 5 3 32 32 H 1.09003 * 109.46723 * 60.00006 * 6 5 3 33 33 H 1.09002 * 109.47407 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46815 * 175.00081 * 7 3 2 35 35 H 1.08992 * 109.47223 * 54.99872 * 7 3 2 36 36 H 0.97007 * 120.00132 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.46202 * 58.66053 * 13 11 10 38 38 H 1.08995 * 109.45532 * 298.68612 * 13 11 10 39 39 H 1.08999 * 109.49435 * 181.32569 * 14 13 11 40 40 H 1.09005 * 109.49764 * 301.38238 * 14 13 11 41 41 H 1.09000 * 109.58428 * 65.15067 * 15 14 13 42 42 H 1.08996 * 109.58792 * 185.57977 * 15 14 13 43 43 H 0.96998 * 120.00359 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58789 * 66.18273 * 25 16 15 45 45 H 1.09001 * 109.58488 * 186.60491 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3861 -1.2492 6 6 2.0565 1.4305 -2.4953 7 6 2.9431 1.3862 1.2493 8 6 2.0698 1.4302 2.4765 9 8 0.8627 1.3993 2.3632 10 7 2.6301 1.5040 3.7001 11 6 1.7811 1.5462 4.8932 12 1 0.8712 2.1047 4.6732 13 6 2.5373 2.2306 6.0343 14 6 1.6391 2.3045 7.2712 15 6 1.2725 0.8855 7.7168 16 7 0.6756 0.1720 6.5794 17 6 -0.5477 -0.4317 6.6988 18 1 -1.2708 -0.0516 7.4051 19 6 -0.8581 -1.5323 5.9120 20 7 0.1016 -2.2049 5.3130 21 14 -2.6382 -2.0591 5.7034 22 1 -3.2251 -1.3658 4.5286 23 1 -2.6983 -3.5277 5.4925 24 1 -3.4062 -1.7023 6.9232 25 6 1.4164 0.1184 5.3117 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5399 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 3.5541 2.2877 -1.2057 30 1 3.5906 0.5104 -1.2951 31 1 1.4456 0.5289 -2.5390 32 1 1.4091 2.3062 -2.4495 33 1 2.6832 1.4886 -3.3853 34 1 3.5540 2.2879 1.2055 35 1 3.5905 0.5106 1.2952 36 1 3.5956 1.5291 3.7907 37 1 2.8197 3.2383 5.7298 38 1 3.4341 1.6578 6.2704 39 1 2.1698 2.8130 8.0762 40 1 0.7309 2.8563 7.0288 41 1 2.1704 0.3624 8.0457 42 1 0.5545 0.9336 8.5354 43 1 -0.1153 -2.9742 4.7635 44 1 2.3260 -0.4673 5.4445 45 1 0.7933 -0.3397 4.5435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567765287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:44 Heat of formation + Delta-G solvation = -17.200677 kcal Electronic energy + Delta-G solvation = -22978.719769 eV Core-core repulsion = 19803.451255 eV Total energy + Delta-G solvation = -3175.268514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.54563 -37.58452 -36.32101 -33.97656 -32.62443 -31.58515 -30.56462 -29.92377 -28.45177 -25.22899 -24.65506 -22.18526 -21.82972 -21.42752 -19.88689 -19.42294 -19.08763 -16.72250 -16.52906 -15.53525 -15.31027 -14.82908 -14.43700 -14.24142 -13.96343 -13.87870 -13.53305 -13.21673 -13.05666 -12.77129 -12.34772 -12.26445 -12.11084 -11.88981 -11.69282 -11.22618 -11.15790 -10.97914 -10.75087 -10.70198 -10.67142 -10.43892 -10.34250 -10.20726 -9.92632 -9.90035 -9.47151 -9.31831 -8.75626 -8.41208 -8.37652 -6.61818 -5.71690 -3.14846 2.75867 3.21944 3.45313 3.51868 3.52798 3.68105 4.57207 4.83053 4.85556 5.01047 5.27686 5.29613 5.40285 5.44758 5.48208 5.56487 5.59137 5.63436 5.68111 5.71928 5.79797 5.89529 5.93842 5.96210 6.13009 6.17438 6.18563 6.27669 6.37658 6.41132 6.45369 6.56572 6.74610 6.81571 6.98771 7.03819 7.08274 7.23741 7.36587 7.78264 7.87609 8.07674 8.52212 8.83021 9.27188 9.91251 10.46084 11.36115 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.005603 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.511247 B = 4996.342351 C = 6481.490585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.154 4.154 3 C -0.042 4.042 4 H 0.079 0.921 5 C -0.115 4.115 6 C -0.151 4.151 7 C -0.134 4.134 8 C 0.506 3.494 9 O -0.525 6.525 10 N -0.726 5.726 11 C 0.118 3.882 12 H 0.079 0.921 13 C -0.115 4.115 14 C -0.131 4.131 15 C 0.142 3.858 16 N -0.589 5.589 17 C -0.257 4.257 18 H 0.066 0.934 19 C 0.008 3.992 20 N -0.899 5.899 21 Si 0.901 3.099 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.168 3.832 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.390 0.610 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.017 0.983 42 H 0.055 0.945 43 H 0.253 0.747 44 H 0.014 0.986 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 8.699 -9.503 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C -0.061 4.061 4 H 0.097 0.903 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.174 4.174 8 C 0.291 3.709 9 O -0.400 6.400 10 N -0.377 5.377 11 C 0.012 3.988 12 H 0.098 0.902 13 C -0.154 4.154 14 C -0.171 4.171 15 C 0.016 3.984 16 N -0.312 5.312 17 C -0.386 4.386 18 H 0.084 0.916 19 C -0.191 4.191 20 N -0.542 5.542 21 Si 0.730 3.270 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.041 3.959 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.222 0.778 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.366 8.509 -9.664 15.355 hybrid contribution -0.297 -0.412 0.028 0.509 sum 8.069 8.096 -9.636 14.950 Atomic orbital electron populations 1.23667 0.95965 1.01239 0.98599 1.22552 0.95963 0.96880 1.01840 1.20121 0.96459 0.97183 0.92328 0.90277 1.21537 0.97857 1.01668 0.94209 1.21757 0.99810 1.02217 0.97015 1.21708 0.98737 1.03700 0.93269 1.20523 0.89298 0.76552 0.84506 1.90742 1.14671 1.48150 1.86423 1.46114 1.09722 1.75547 1.06297 1.21900 0.93011 1.01342 0.82505 0.90241 1.21672 0.98695 0.99088 0.95917 1.22000 0.98970 0.99926 0.96185 1.20950 0.96247 0.90092 0.91117 1.43981 1.19727 1.61684 1.05805 1.19157 0.90059 1.07278 1.22137 0.91640 1.25004 0.97415 0.95561 1.01145 1.70018 1.30293 1.19025 1.34904 0.86318 0.85077 0.77323 0.78237 1.21259 1.21804 1.20431 1.21084 0.95531 0.89625 0.89659 0.89264 0.88814 0.88190 0.92090 0.91925 0.92302 0.92900 0.93156 0.89441 0.89175 0.77752 0.93239 0.92379 0.92730 0.92185 0.96476 0.92683 0.93727 0.96746 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 13.22 29.02 0.38 -2.15 16 2 C -0.15 -2.26 6.76 -36.02 -0.24 -2.51 16 3 C -0.04 -0.53 1.82 -91.77 -0.17 -0.70 16 4 H 0.08 1.11 7.60 -51.93 -0.39 0.71 16 5 C -0.12 -1.11 5.39 -26.73 -0.14 -1.26 16 6 C -0.15 -1.42 9.73 37.16 0.36 -1.06 16 7 C -0.13 -1.64 5.16 -27.89 -0.14 -1.78 16 8 C 0.51 8.69 7.55 -10.99 -0.08 8.61 16 9 O -0.52 -11.40 13.83 5.56 0.08 -11.32 16 10 N -0.73 -11.87 5.08 -53.69 -0.27 -12.14 16 11 C 0.12 2.34 2.60 -67.81 -0.18 2.16 16 12 H 0.08 1.81 7.58 -51.92 -0.39 1.42 16 13 C -0.12 -1.90 5.36 -26.69 -0.14 -2.04 16 14 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 15 C 0.14 3.02 6.52 -3.71 -0.02 2.99 16 16 N -0.59 -15.27 2.99 -172.32 -0.52 -15.79 16 17 C -0.26 -7.35 9.59 -15.06 -0.14 -7.49 16 18 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 19 C 0.01 0.23 4.91 -17.43 -0.09 0.14 16 20 N -0.90 -27.17 11.19 55.49 0.62 -26.55 16 21 Si 0.90 22.87 29.59 -169.99 -5.03 17.84 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.17 4.17 4.89 -3.71 -0.02 4.15 16 26 H 0.09 1.41 8.06 -52.49 -0.42 0.98 16 27 H 0.09 1.53 7.83 -52.49 -0.41 1.12 16 28 H 0.10 1.42 8.06 -52.49 -0.42 0.99 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.60 7.38 -51.93 -0.38 0.22 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.39 4.97 8.60 -40.82 -0.35 4.62 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.10 2.78 6.04 -51.93 -0.31 2.47 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -32.96 356.54 -8.66 -41.62 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -8.13 Total: 4.33 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.79 Total: -3.35 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.17 Total: -54.48 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.84 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.96 -8.66 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567765287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.421 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds