Wall clock time and date at job start Tue Mar 31 2020 01:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 120.00091 * 2 1 4 4 H 1.08997 * 109.46987 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.46695 * 239.99870 * 3 2 1 6 6 C 1.52999 * 109.47522 * 64.99740 * 5 3 2 7 7 C 1.53000 * 109.47214 * 119.99867 * 3 2 1 8 8 C 1.50695 * 109.47076 * 294.99668 * 7 3 2 9 9 O 1.21282 * 120.00154 * 0.02562 * 8 7 3 10 10 N 1.34774 * 120.00185 * 180.02562 * 8 7 3 11 11 C 1.46494 * 120.00524 * 180.02562 * 10 8 7 12 12 H 1.09007 * 109.52033 * 325.08101 * 11 10 8 13 13 C 1.53043 * 109.50034 * 205.00085 * 11 10 8 14 14 C 1.53042 * 109.52588 * 178.67666 * 13 11 10 15 15 C 1.53185 * 109.31801 * 61.36883 * 14 13 11 16 16 N 1.46935 * 108.77643 * 305.36702 * 15 14 13 17 17 C 1.36931 * 120.63006 * 233.58574 * 16 15 14 18 18 H 1.08001 * 119.99988 * 27.68172 * 17 16 15 19 19 C 1.38809 * 119.99891 * 207.68249 * 17 16 15 20 20 N 1.31618 * 120.00290 * 17.36942 * 19 17 16 21 21 Si 1.86802 * 120.00128 * 197.36428 * 19 17 16 22 22 H 1.48501 * 109.46973 * 89.99972 * 21 19 17 23 23 H 1.48494 * 109.47222 * 210.00108 * 21 19 17 24 24 H 1.48497 * 109.47200 * 330.00246 * 21 19 17 25 25 C 1.46926 * 118.73705 * 53.60433 * 16 15 14 26 26 H 1.08000 * 119.99802 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99595 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00339 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47413 * 184.99956 * 5 3 2 30 30 H 1.08999 * 109.47494 * 304.99682 * 5 3 2 31 31 H 1.08995 * 109.47438 * 300.00025 * 6 5 3 32 32 H 1.09003 * 109.46723 * 60.00006 * 6 5 3 33 33 H 1.09002 * 109.47407 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46815 * 175.00081 * 7 3 2 35 35 H 1.08992 * 109.47223 * 54.99872 * 7 3 2 36 36 H 0.97007 * 120.00132 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.46202 * 58.66053 * 13 11 10 38 38 H 1.08995 * 109.45532 * 298.68612 * 13 11 10 39 39 H 1.08999 * 109.49435 * 181.32569 * 14 13 11 40 40 H 1.09005 * 109.49764 * 301.38238 * 14 13 11 41 41 H 1.09000 * 109.58428 * 65.15067 * 15 14 13 42 42 H 1.08996 * 109.58792 * 185.57977 * 15 14 13 43 43 H 0.96998 * 120.00359 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58789 * 66.18273 * 25 16 15 45 45 H 1.09001 * 109.58488 * 186.60491 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3861 -1.2492 6 6 2.0565 1.4305 -2.4953 7 6 2.9431 1.3862 1.2493 8 6 2.0698 1.4302 2.4765 9 8 0.8627 1.3993 2.3632 10 7 2.6301 1.5040 3.7001 11 6 1.7811 1.5462 4.8932 12 1 0.8712 2.1047 4.6732 13 6 2.5373 2.2306 6.0343 14 6 1.6391 2.3045 7.2712 15 6 1.2725 0.8855 7.7168 16 7 0.6756 0.1720 6.5794 17 6 -0.5477 -0.4317 6.6988 18 1 -1.2708 -0.0516 7.4051 19 6 -0.8581 -1.5323 5.9120 20 7 0.1016 -2.2049 5.3130 21 14 -2.6382 -2.0591 5.7034 22 1 -3.2251 -1.3658 4.5286 23 1 -2.6983 -3.5277 5.4925 24 1 -3.4062 -1.7023 6.9232 25 6 1.4164 0.1184 5.3117 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5399 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 3.5541 2.2877 -1.2057 30 1 3.5906 0.5104 -1.2951 31 1 1.4456 0.5289 -2.5390 32 1 1.4091 2.3062 -2.4495 33 1 2.6832 1.4886 -3.3853 34 1 3.5540 2.2879 1.2055 35 1 3.5905 0.5106 1.2952 36 1 3.5956 1.5291 3.7907 37 1 2.8197 3.2383 5.7298 38 1 3.4341 1.6578 6.2704 39 1 2.1698 2.8130 8.0762 40 1 0.7309 2.8563 7.0288 41 1 2.1704 0.3624 8.0457 42 1 0.5545 0.9336 8.5354 43 1 -0.1153 -2.9742 4.7635 44 1 2.3260 -0.4673 5.4445 45 1 0.7933 -0.3397 4.5435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567765287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:43 Heat of formation + Delta-G solvation = -38.297671 kcal Electronic energy + Delta-G solvation = -22979.634603 eV Core-core repulsion = 19803.451255 eV Total energy + Delta-G solvation = -3176.183348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94595 -39.12832 -37.53036 -35.69116 -34.40718 -32.61980 -32.03176 -31.57692 -29.92649 -27.25237 -25.74257 -23.94336 -23.32530 -22.49392 -21.34090 -20.87928 -20.37349 -18.75273 -17.84302 -17.17453 -16.72301 -16.36226 -15.84936 -15.58860 -15.47765 -15.25788 -14.89716 -14.63322 -14.56495 -14.14266 -14.02557 -13.84023 -13.47460 -12.99917 -12.95745 -12.87041 -12.72027 -12.44876 -12.23985 -12.14357 -12.05473 -12.02468 -11.70021 -11.66088 -11.57083 -11.35074 -11.25061 -10.72141 -10.57936 -10.03146 -9.92280 -8.70283 -7.90870 -5.36405 1.37462 1.43255 1.48680 1.52877 1.87735 2.35212 2.48624 3.25259 3.71333 3.84942 3.91093 3.93522 4.02616 4.15346 4.27468 4.36246 4.42057 4.47836 4.51362 4.61197 4.66239 4.70659 4.81925 4.84300 4.93283 5.00723 5.07279 5.08297 5.10488 5.19260 5.19977 5.25482 5.35507 5.42113 5.48440 5.52158 5.56884 5.61080 5.81731 5.84316 6.03239 6.35043 6.79295 7.10762 7.53293 7.84372 8.32766 9.13440 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.005603 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.511247 B = 4996.342351 C = 6481.490585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.144 4.144 3 C -0.042 4.042 4 H 0.060 0.940 5 C -0.107 4.107 6 C -0.153 4.153 7 C -0.123 4.123 8 C 0.495 3.505 9 O -0.578 6.578 10 N -0.715 5.715 11 C 0.132 3.868 12 H 0.045 0.955 13 C -0.106 4.106 14 C -0.122 4.122 15 C 0.135 3.865 16 N -0.611 5.611 17 C -0.266 4.266 18 H 0.067 0.933 19 C -0.047 4.047 20 N -0.928 5.928 21 Si 0.958 3.042 22 H -0.296 1.296 23 H -0.290 1.290 24 H -0.261 1.261 25 C 0.181 3.819 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.412 0.588 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.022 0.978 42 H 0.054 0.946 43 H 0.247 0.753 44 H -0.003 1.003 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.903 10.567 -9.443 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.162 4.162 3 C -0.061 4.061 4 H 0.079 0.921 5 C -0.144 4.144 6 C -0.210 4.210 7 C -0.162 4.162 8 C 0.283 3.717 9 O -0.457 6.457 10 N -0.367 5.367 11 C 0.026 3.974 12 H 0.063 0.937 13 C -0.144 4.144 14 C -0.161 4.161 15 C 0.010 3.990 16 N -0.335 5.335 17 C -0.397 4.397 18 H 0.085 0.915 19 C -0.243 4.243 20 N -0.574 5.574 21 Si 0.787 3.213 22 H -0.224 1.224 23 H -0.216 1.216 24 H -0.185 1.185 25 C 0.054 3.946 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.148 0.852 35 H 0.129 0.871 36 H 0.249 0.751 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.015 0.985 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.024 10.407 -9.578 17.932 hybrid contribution -1.088 -0.992 0.051 1.473 sum 9.936 9.415 -9.526 16.677 Atomic orbital electron populations 1.23619 0.96908 1.00428 1.01564 1.22878 0.95635 0.98492 0.99183 1.20163 0.96637 0.94955 0.94358 0.92116 1.21503 0.97394 1.03404 0.92110 1.21773 0.99956 1.01313 0.97959 1.21756 0.98001 1.06646 0.89811 1.21556 0.89272 0.74973 0.85937 1.90737 1.17395 1.50362 1.87212 1.45958 1.10603 1.74953 1.05216 1.21390 0.93340 0.97579 0.85122 0.93671 1.21631 0.98259 1.00783 0.93716 1.21901 0.99329 0.97013 0.97902 1.21179 0.96048 0.92024 0.89742 1.44275 1.19462 1.62083 1.07687 1.19507 0.91521 1.06986 1.21643 0.91547 1.25726 1.00863 0.96113 1.01558 1.70164 1.31910 1.19459 1.35889 0.85398 0.81076 0.76694 0.78181 1.22360 1.21630 1.18540 1.20786 0.93360 0.92311 0.88177 0.90046 0.89927 0.87589 0.89677 0.90732 0.93762 0.93379 0.91312 0.85237 0.87102 0.75120 0.89639 0.90775 0.88487 0.93247 0.96044 0.92789 0.94449 0.98512 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.48 13.22 67.78 0.90 -5.58 16 2 C -0.14 -4.29 6.76 25.65 0.17 -4.11 16 3 C -0.04 -1.00 1.82 -11.54 -0.02 -1.02 16 4 H 0.06 1.69 7.60 -2.39 -0.02 1.67 16 5 C -0.11 -1.74 5.39 30.59 0.16 -1.57 16 6 C -0.15 -2.62 9.73 71.98 0.70 -1.92 16 7 C -0.12 -2.65 5.16 29.85 0.15 -2.49 16 8 C 0.49 16.66 7.55 87.66 0.66 17.32 16 9 O -0.58 -26.06 13.83 -3.04 -0.04 -26.11 16 10 N -0.71 -22.28 5.08 -442.17 -2.25 -24.52 16 11 C 0.13 5.19 2.60 45.07 0.12 5.31 16 12 H 0.04 2.10 7.58 -2.38 -0.02 2.08 16 13 C -0.11 -3.13 5.36 30.62 0.16 -2.97 16 14 C -0.12 -3.87 6.08 30.67 0.19 -3.68 16 15 C 0.13 5.58 6.52 86.36 0.56 6.14 16 16 N -0.61 -32.26 2.99 -699.09 -2.09 -34.35 16 17 C -0.27 -15.63 9.59 84.03 0.81 -14.82 16 18 H 0.07 3.79 7.89 -2.91 -0.02 3.76 16 19 C -0.05 -2.81 4.91 84.86 0.42 -2.39 16 20 N -0.93 -58.54 11.19 21.65 0.24 -58.30 16 21 Si 0.96 48.58 29.59 68.60 2.03 50.61 16 22 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 23 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 24 H -0.26 -12.34 7.11 99.48 0.71 -11.64 16 25 C 0.18 9.22 4.89 86.36 0.42 9.65 16 26 H 0.08 2.82 8.06 -2.91 -0.02 2.79 16 27 H 0.08 2.96 7.83 -2.91 -0.02 2.94 16 28 H 0.11 2.99 8.06 -2.91 -0.02 2.97 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.88 7.38 -2.39 -0.02 0.86 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.41 9.14 8.60 -92.70 -0.80 8.34 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 40 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 42 H 0.05 2.19 7.93 -2.39 -0.02 2.18 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.04 2.63 6.04 -2.39 -0.01 2.62 16 Total: -1.00 -77.53 356.54 3.43 -74.10 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.14 Total: 20.72 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 5.40 Total: -2.15 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -4.10 Total: -117.17 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.04 Total: -26.11 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.61 kcal Total: -77.53 3.43 -74.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567765287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.801 kcal (2) G-P(sol) polarization free energy of solvation -77.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds