Wall clock time and date at job start Tue Mar 31 2020 01:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00276 * 2 1 4 4 H 1.09005 * 109.47173 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.46671 * 120.00176 * 3 2 1 6 6 C 1.53006 * 109.46792 * 186.77222 * 5 3 2 7 7 C 1.52994 * 109.47109 * 240.00454 * 3 2 1 8 8 C 1.50701 * 109.47150 * 65.74645 * 7 3 2 9 9 O 1.21277 * 120.00439 * 6.27130 * 8 7 3 10 10 N 1.34779 * 119.99890 * 186.27833 * 8 7 3 11 11 C 1.46494 * 120.00157 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.52619 * 325.08360 * 11 10 8 13 13 C 1.53041 * 109.50103 * 205.00091 * 11 10 8 14 14 C 1.53042 * 109.52986 * 178.67824 * 13 11 10 15 15 C 1.53187 * 109.31163 * 61.37135 * 14 13 11 16 16 N 1.46930 * 108.77724 * 305.36404 * 15 14 13 17 17 C 1.36937 * 120.63446 * 233.58623 * 16 15 14 18 18 H 1.08004 * 120.00131 * 151.42683 * 17 16 15 19 19 C 1.38812 * 119.99946 * 331.43476 * 17 16 15 20 20 N 1.31620 * 120.00116 * 341.67939 * 19 17 16 21 21 Si 1.86801 * 120.00110 * 161.67328 * 19 17 16 22 22 H 1.48494 * 109.47046 * 89.99689 * 21 19 17 23 23 H 1.48492 * 109.47344 * 210.00068 * 21 19 17 24 24 H 1.48501 * 109.46970 * 330.00095 * 21 19 17 25 25 C 1.46927 * 118.73615 * 53.61333 * 16 15 14 26 26 H 1.07989 * 120.00438 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99800 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99859 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47674 * 306.76819 * 5 3 2 30 30 H 1.09004 * 109.47167 * 66.77697 * 5 3 2 31 31 H 1.09001 * 109.47153 * 177.31269 * 6 5 3 32 32 H 1.09005 * 109.46793 * 297.30886 * 6 5 3 33 33 H 1.08997 * 109.47045 * 57.30720 * 6 5 3 34 34 H 1.09002 * 109.47471 * 305.74042 * 7 3 2 35 35 H 1.09006 * 109.47178 * 185.74449 * 7 3 2 36 36 H 0.97006 * 119.99944 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46137 * 58.65887 * 13 11 10 38 38 H 1.09004 * 109.45897 * 298.69127 * 13 11 10 39 39 H 1.08996 * 109.49952 * 181.32288 * 14 13 11 40 40 H 1.09000 * 109.49583 * 301.38566 * 14 13 11 41 41 H 1.09000 * 109.58982 * 65.15492 * 15 14 13 42 42 H 1.09004 * 109.59006 * 185.57828 * 15 14 13 43 43 H 0.96996 * 120.00441 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.59313 * 66.17635 * 25 16 15 45 45 H 1.08999 * 109.58426 * 186.46535 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9432 1.3860 1.2492 6 6 3.5774 2.7756 1.3372 7 6 2.9431 1.3861 -1.2492 8 6 2.0694 1.4486 -2.4755 9 8 0.8661 1.5449 -2.3586 10 7 2.6252 1.3973 -3.7023 11 6 1.7759 1.4574 -4.8944 12 1 0.8351 0.9432 -4.6978 13 6 2.4918 0.7821 -6.0664 14 6 1.5916 0.8154 -7.3036 15 6 1.3079 2.2718 -7.6847 16 7 0.7526 2.9670 -6.5155 17 6 -0.4336 3.6453 -6.6053 18 1 -1.0619 3.7523 -5.7334 19 6 -0.8286 4.1951 -7.8171 20 7 0.0568 4.3896 -8.7714 21 14 -2.6169 4.6590 -8.0936 22 1 -2.8351 6.0648 -7.6680 23 1 -2.9469 4.5212 -9.5349 24 1 -3.4903 3.7596 -7.2977 25 6 1.4946 2.9212 -5.2481 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 2.3336 1.2082 2.1351 30 1 3.7278 0.6316 1.1906 31 1 4.1658 2.8492 2.2518 32 1 4.2249 2.9347 0.4749 33 1 2.7935 3.5328 1.3476 34 1 3.5812 0.5040 -1.3023 35 1 3.5636 2.2809 -1.1993 36 1 3.5877 1.3205 -3.7959 37 1 2.7154 -0.2528 -5.8077 38 1 3.4204 1.3121 -6.2786 39 1 2.0924 0.3137 -8.1315 40 1 0.6529 0.3068 -7.0842 41 1 2.2347 2.7563 -7.9918 42 1 0.5888 2.3019 -8.5033 43 1 -0.2191 4.7742 -9.6180 44 1 2.4366 3.4587 -5.3565 45 1 0.8996 3.3820 -4.4596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567765290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:47 Heat of formation + Delta-G solvation = -18.426160 kcal Electronic energy + Delta-G solvation = -22592.959932 eV Core-core repulsion = 19417.638277 eV Total energy + Delta-G solvation = -3175.321655 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.75939 -37.67226 -36.42746 -34.18384 -32.44633 -32.22275 -30.44517 -30.08387 -28.20529 -25.27265 -25.21260 -22.24059 -21.99886 -21.09364 -20.16012 -19.58129 -19.20090 -16.89953 -16.72353 -15.68502 -15.40124 -14.93824 -14.52746 -14.45323 -14.06243 -13.77944 -13.57799 -13.32833 -13.16777 -12.92602 -12.47691 -12.36788 -12.23815 -11.89322 -11.81682 -11.67933 -11.18081 -11.04901 -10.85619 -10.77866 -10.73244 -10.52237 -10.24589 -10.22180 -9.87627 -9.86660 -9.58642 -9.45699 -9.09445 -8.71084 -8.34845 -6.62864 -5.76079 -3.17615 2.45712 3.00453 3.41311 3.47361 3.49120 3.54080 4.54689 4.65641 4.72758 4.82315 5.11589 5.18605 5.31314 5.33187 5.35694 5.42426 5.43489 5.53313 5.57817 5.66011 5.74931 5.76188 5.77268 5.89796 6.03519 6.06678 6.12973 6.21261 6.24542 6.28239 6.56250 6.63498 6.73427 6.74562 6.77589 6.88441 6.96225 7.06913 7.37035 7.64267 7.86499 7.87598 8.48228 8.61744 9.25143 9.87837 10.44305 11.32883 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020972 B = 0.003975 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.778442 B = 7043.064806 C = 7529.718303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.159 4.159 3 C -0.044 4.044 4 H 0.084 0.916 5 C -0.115 4.115 6 C -0.156 4.156 7 C -0.135 4.135 8 C 0.507 3.493 9 O -0.530 6.530 10 N -0.727 5.727 11 C 0.127 3.873 12 H 0.084 0.916 13 C -0.114 4.114 14 C -0.140 4.140 15 C 0.169 3.831 16 N -0.588 5.588 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.143 3.857 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.392 0.608 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.019 0.981 42 H 0.085 0.915 43 H 0.253 0.747 44 H 0.015 0.985 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.719 -8.698 15.364 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C -0.063 4.063 4 H 0.102 0.898 5 C -0.153 4.153 6 C -0.213 4.213 7 C -0.175 4.175 8 C 0.292 3.708 9 O -0.406 6.406 10 N -0.378 5.378 11 C 0.021 3.979 12 H 0.102 0.898 13 C -0.152 4.152 14 C -0.179 4.179 15 C 0.043 3.957 16 N -0.311 5.311 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.016 3.984 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.225 0.775 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.785 -8.538 15.274 19.580 hybrid contribution -0.302 0.182 -0.413 0.543 sum 8.484 -8.356 14.861 19.043 Atomic orbital electron populations 1.23764 0.95998 1.01503 0.98677 1.22667 0.95996 0.97174 1.01903 1.20144 0.96533 0.96990 0.92661 0.89786 1.21538 0.98804 0.97458 0.97471 1.21856 1.00866 0.97100 1.01527 1.21764 0.98732 1.03992 0.93042 1.20591 0.89216 0.76390 0.84568 1.90721 1.14976 1.48325 1.86531 1.46185 1.10359 1.75159 1.06112 1.21677 0.93788 0.99766 0.82624 0.89783 1.21670 0.98992 0.98881 0.95700 1.22174 0.98573 1.01549 0.95644 1.20794 0.97732 0.86285 0.90860 1.43992 1.23092 1.58547 1.05424 1.19196 0.94597 1.27941 0.96343 0.91680 1.25021 0.97927 0.98417 0.98142 1.70053 1.31890 1.46780 1.06019 0.86320 0.85243 0.78378 0.77036 1.21374 1.21550 1.20385 1.21179 0.95210 0.91978 0.90067 0.89232 0.88378 0.88198 0.91718 0.91974 0.92840 0.92483 0.92513 0.89473 0.88724 0.77469 0.93220 0.92340 0.92794 0.92458 0.96317 0.89635 0.93698 0.96688 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 13.41 29.01 0.39 -1.66 16 2 C -0.16 -1.84 7.88 -36.03 -0.28 -2.12 16 3 C -0.04 -0.48 1.78 -91.77 -0.16 -0.64 16 4 H 0.08 1.08 7.48 -51.93 -0.39 0.69 16 5 C -0.12 -0.95 5.37 -26.73 -0.14 -1.09 16 6 C -0.16 -1.20 9.64 37.16 0.36 -0.84 16 7 C -0.14 -1.40 5.05 -27.89 -0.14 -1.54 16 8 C 0.51 7.56 7.48 -10.98 -0.08 7.47 16 9 O -0.53 -10.16 14.13 5.56 0.08 -10.08 16 10 N -0.73 -10.43 5.08 -53.69 -0.27 -10.71 16 11 C 0.13 2.32 2.60 -67.81 -0.18 2.14 16 12 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 13 C -0.11 -1.87 5.35 -26.69 -0.14 -2.02 16 14 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 15 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 16 N -0.59 -15.23 2.99 -172.31 -0.51 -15.75 16 17 C -0.25 -7.19 9.57 -15.06 -0.14 -7.34 16 18 H 0.07 1.88 7.89 -52.48 -0.41 1.47 16 19 C 0.00 0.10 4.87 -17.43 -0.08 0.01 16 20 N -0.90 -26.58 11.32 55.49 0.63 -25.96 16 21 Si 0.90 22.29 29.59 -169.99 -5.03 17.26 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.14 3.19 6.09 -3.71 -0.02 3.17 16 26 H 0.09 1.01 8.06 -52.49 -0.42 0.59 16 27 H 0.10 1.34 7.83 -52.48 -0.41 0.93 16 28 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.41 6.63 -51.93 -0.34 0.07 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.84 6.44 -51.93 -0.33 0.50 16 36 H 0.39 4.31 8.60 -40.82 -0.35 3.96 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.09 2.29 6.14 -51.93 -0.32 1.97 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -32.07 355.45 -8.57 -40.64 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.00 Total: 2.45 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.82 Total: -3.22 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.16 Total: -52.41 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.07 -8.57 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567765290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.218 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds