Wall clock time and date at job start Tue Mar 31 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00276 * 2 1 4 4 H 1.09005 * 109.47173 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.46671 * 120.00176 * 3 2 1 6 6 C 1.53006 * 109.46792 * 186.77222 * 5 3 2 7 7 C 1.52994 * 109.47109 * 240.00454 * 3 2 1 8 8 C 1.50701 * 109.47150 * 65.74645 * 7 3 2 9 9 O 1.21277 * 120.00439 * 6.27130 * 8 7 3 10 10 N 1.34779 * 119.99890 * 186.27833 * 8 7 3 11 11 C 1.46494 * 120.00157 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.52619 * 325.08360 * 11 10 8 13 13 C 1.53041 * 109.50103 * 205.00091 * 11 10 8 14 14 C 1.53042 * 109.52986 * 178.67824 * 13 11 10 15 15 C 1.53187 * 109.31163 * 61.37135 * 14 13 11 16 16 N 1.46930 * 108.77724 * 305.36404 * 15 14 13 17 17 C 1.36937 * 120.63446 * 233.58623 * 16 15 14 18 18 H 1.08004 * 120.00131 * 151.42683 * 17 16 15 19 19 C 1.38812 * 119.99946 * 331.43476 * 17 16 15 20 20 N 1.31620 * 120.00116 * 341.67939 * 19 17 16 21 21 Si 1.86801 * 120.00110 * 161.67328 * 19 17 16 22 22 H 1.48494 * 109.47046 * 89.99689 * 21 19 17 23 23 H 1.48492 * 109.47344 * 210.00068 * 21 19 17 24 24 H 1.48501 * 109.46970 * 330.00095 * 21 19 17 25 25 C 1.46927 * 118.73615 * 53.61333 * 16 15 14 26 26 H 1.07989 * 120.00438 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99800 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99859 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47674 * 306.76819 * 5 3 2 30 30 H 1.09004 * 109.47167 * 66.77697 * 5 3 2 31 31 H 1.09001 * 109.47153 * 177.31269 * 6 5 3 32 32 H 1.09005 * 109.46793 * 297.30886 * 6 5 3 33 33 H 1.08997 * 109.47045 * 57.30720 * 6 5 3 34 34 H 1.09002 * 109.47471 * 305.74042 * 7 3 2 35 35 H 1.09006 * 109.47178 * 185.74449 * 7 3 2 36 36 H 0.97006 * 119.99944 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46137 * 58.65887 * 13 11 10 38 38 H 1.09004 * 109.45897 * 298.69127 * 13 11 10 39 39 H 1.08996 * 109.49952 * 181.32288 * 14 13 11 40 40 H 1.09000 * 109.49583 * 301.38566 * 14 13 11 41 41 H 1.09000 * 109.58982 * 65.15492 * 15 14 13 42 42 H 1.09004 * 109.59006 * 185.57828 * 15 14 13 43 43 H 0.96996 * 120.00441 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.59313 * 66.17635 * 25 16 15 45 45 H 1.08999 * 109.58426 * 186.46535 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9432 1.3860 1.2492 6 6 3.5774 2.7756 1.3372 7 6 2.9431 1.3861 -1.2492 8 6 2.0694 1.4486 -2.4755 9 8 0.8661 1.5449 -2.3586 10 7 2.6252 1.3973 -3.7023 11 6 1.7759 1.4574 -4.8944 12 1 0.8351 0.9432 -4.6978 13 6 2.4918 0.7821 -6.0664 14 6 1.5916 0.8154 -7.3036 15 6 1.3079 2.2718 -7.6847 16 7 0.7526 2.9670 -6.5155 17 6 -0.4336 3.6453 -6.6053 18 1 -1.0619 3.7523 -5.7334 19 6 -0.8286 4.1951 -7.8171 20 7 0.0568 4.3896 -8.7714 21 14 -2.6169 4.6590 -8.0936 22 1 -2.8351 6.0648 -7.6680 23 1 -2.9469 4.5212 -9.5349 24 1 -3.4903 3.7596 -7.2977 25 6 1.4946 2.9212 -5.2481 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 2.3336 1.2082 2.1351 30 1 3.7278 0.6316 1.1906 31 1 4.1658 2.8492 2.2518 32 1 4.2249 2.9347 0.4749 33 1 2.7935 3.5328 1.3476 34 1 3.5812 0.5040 -1.3023 35 1 3.5636 2.2809 -1.1993 36 1 3.5877 1.3205 -3.7959 37 1 2.7154 -0.2528 -5.8077 38 1 3.4204 1.3121 -6.2786 39 1 2.0924 0.3137 -8.1315 40 1 0.6529 0.3068 -7.0842 41 1 2.2347 2.7563 -7.9918 42 1 0.5888 2.3019 -8.5033 43 1 -0.2191 4.7742 -9.6180 44 1 2.4366 3.4587 -5.3565 45 1 0.8996 3.3820 -4.4596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567765290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:46 Heat of formation + Delta-G solvation = -38.412824 kcal Electronic energy + Delta-G solvation = -22593.826619 eV Core-core repulsion = 19417.638277 eV Total energy + Delta-G solvation = -3176.188342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.00587 -39.16139 -37.50586 -35.82046 -34.13238 -33.07787 -32.34890 -31.27417 -29.54170 -27.26751 -26.11864 -23.89859 -23.63360 -21.96918 -21.40316 -20.98791 -20.36104 -18.72642 -18.03476 -17.16555 -16.69632 -16.46492 -15.90936 -15.69236 -15.44458 -15.13063 -14.94128 -14.59023 -14.46758 -14.27338 -14.00011 -13.83110 -13.38029 -13.18998 -13.03012 -12.79221 -12.74053 -12.54347 -12.44904 -12.14833 -11.99154 -11.88632 -11.75825 -11.56900 -11.54317 -11.31267 -11.29805 -10.71686 -10.63115 -10.14299 -9.93060 -8.69990 -7.93343 -5.38583 1.41982 1.43180 1.51724 1.54426 1.83378 2.28351 2.50543 3.20707 3.68690 3.83541 3.85149 3.95035 3.97551 4.12453 4.26026 4.36364 4.43124 4.47414 4.51902 4.59618 4.62568 4.67929 4.79059 4.80764 4.91255 4.99967 5.01939 5.07807 5.11989 5.17177 5.20370 5.24983 5.27651 5.39174 5.47686 5.54791 5.60531 5.63143 5.73938 5.81248 6.05722 6.34624 6.74863 7.10708 7.47545 7.80652 8.31004 9.12451 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020972 B = 0.003975 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.778442 B = 7043.064806 C = 7529.718303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.150 4.150 3 C -0.047 4.047 4 H 0.052 0.948 5 C -0.107 4.107 6 C -0.157 4.157 7 C -0.124 4.124 8 C 0.499 3.501 9 O -0.579 6.579 10 N -0.714 5.714 11 C 0.144 3.856 12 H 0.051 0.949 13 C -0.103 4.103 14 C -0.130 4.130 15 C 0.173 3.827 16 N -0.608 5.608 17 C -0.272 4.272 18 H 0.050 0.950 19 C -0.041 4.041 20 N -0.928 5.928 21 Si 0.964 3.036 22 H -0.283 1.283 23 H -0.283 1.283 24 H -0.277 1.277 25 C 0.146 3.854 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.123 0.877 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.415 0.585 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.006 0.994 42 H 0.050 0.950 43 H 0.253 0.747 44 H 0.019 0.981 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.169 -10.325 16.192 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.168 4.168 3 C -0.066 4.066 4 H 0.071 0.929 5 C -0.144 4.144 6 C -0.215 4.215 7 C -0.163 4.163 8 C 0.287 3.713 9 O -0.458 6.458 10 N -0.367 5.367 11 C 0.037 3.963 12 H 0.070 0.930 13 C -0.141 4.141 14 C -0.170 4.170 15 C 0.048 3.952 16 N -0.332 5.332 17 C -0.402 4.402 18 H 0.068 0.932 19 C -0.237 4.237 20 N -0.573 5.573 21 Si 0.791 3.209 22 H -0.209 1.209 23 H -0.209 1.209 24 H -0.202 1.202 25 C 0.019 3.981 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.251 0.749 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.024 0.976 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.037 0.963 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 11.293 -10.180 16.123 22.161 hybrid contribution -1.050 0.740 -0.634 1.433 sum 10.242 -9.439 15.489 20.831 Atomic orbital electron populations 1.23764 0.96877 1.00903 1.01056 1.22966 0.95687 0.98438 0.99723 1.20163 0.96542 0.95477 0.94390 0.92925 1.21481 0.98758 0.98443 0.95747 1.21872 1.00662 0.96314 1.02612 1.21801 0.98066 1.06675 0.89797 1.21522 0.89146 0.74855 0.85749 1.90723 1.17547 1.50320 1.87210 1.45973 1.11130 1.74718 1.04830 1.21137 0.93827 0.96298 0.85056 0.93033 1.21598 0.98427 1.01013 0.93098 1.22017 0.99200 0.97634 0.98134 1.20681 0.95793 0.89298 0.89413 1.44226 1.22944 1.58959 1.07051 1.19354 0.95954 1.28612 0.96273 0.93245 1.25715 1.01640 0.98582 0.97764 1.70170 1.33471 1.47426 1.06213 0.85348 0.80540 0.78021 0.76988 1.20920 1.20870 1.20209 1.21217 0.94148 0.94910 0.87805 0.88376 0.90719 0.85923 0.91935 0.89782 0.91529 0.91655 0.93951 0.85879 0.86530 0.74853 0.89534 0.90580 0.89694 0.93603 0.97629 0.93108 0.93783 0.96280 0.95558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.89 13.41 67.78 0.91 -3.98 16 2 C -0.15 -3.27 7.88 25.65 0.20 -3.07 16 3 C -0.05 -0.93 1.78 -11.54 -0.02 -0.95 16 4 H 0.05 1.39 7.48 -2.38 -0.02 1.37 16 5 C -0.11 -1.47 5.37 30.60 0.16 -1.30 16 6 C -0.16 -2.03 9.64 71.98 0.69 -1.34 16 7 C -0.12 -2.18 5.05 29.85 0.15 -2.03 16 8 C 0.50 14.24 7.48 87.66 0.66 14.89 16 9 O -0.58 -22.77 14.13 -3.02 -0.04 -22.81 16 10 N -0.71 -18.88 5.08 -442.16 -2.25 -21.12 16 11 C 0.14 5.13 2.60 45.07 0.12 5.24 16 12 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 13 C -0.10 -3.08 5.35 30.62 0.16 -2.91 16 14 C -0.13 -4.74 6.08 30.67 0.19 -4.56 16 15 C 0.17 8.42 5.31 86.36 0.46 8.88 16 16 N -0.61 -32.46 2.99 -699.07 -2.09 -34.55 16 17 C -0.27 -16.18 9.57 84.03 0.80 -15.37 16 18 H 0.05 3.02 7.89 -2.91 -0.02 3.00 16 19 C -0.04 -2.38 4.87 84.86 0.41 -1.97 16 20 N -0.93 -55.87 11.32 21.65 0.25 -55.63 16 21 Si 0.96 46.92 29.59 68.60 2.03 48.95 16 22 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 25 C 0.15 6.65 6.09 86.36 0.53 7.17 16 26 H 0.10 2.27 8.06 -2.92 -0.02 2.24 16 27 H 0.07 2.24 7.83 -2.91 -0.02 2.21 16 28 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.73 6.63 -2.38 -0.02 0.72 16 33 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 1.62 6.44 -2.38 -0.02 1.60 16 36 H 0.41 7.42 8.60 -92.70 -0.80 6.63 16 37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.05 2.80 6.14 -2.39 -0.01 2.78 16 43 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.03 1.31 7.93 -2.39 -0.02 1.30 16 Total: -1.00 -74.19 355.45 3.47 -70.72 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.15 Total: 15.74 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 5.43 Total: -1.29 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -4.09 Total: -111.30 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.04 Total: -22.81 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -74.19 3.47 -70.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567765290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.306 kcal (2) G-P(sol) polarization free energy of solvation -74.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds