Wall clock time and date at job start Tue Mar 31 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00243 * 2 1 4 4 H 1.09005 * 109.47322 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47341 * 119.99828 * 3 2 1 6 6 C 1.53004 * 109.47105 * 294.42253 * 5 3 2 7 7 C 1.53004 * 109.47433 * 239.99962 * 3 2 1 8 8 C 1.50697 * 109.46893 * 66.19483 * 7 3 2 9 9 O 1.21281 * 120.00491 * 5.71845 * 8 7 3 10 10 N 1.34776 * 119.99980 * 185.72058 * 8 7 3 11 11 C 1.46503 * 119.99694 * 0.02562 * 10 8 7 12 12 C 1.46500 * 120.00451 * 179.97438 * 10 8 7 13 13 H 1.09009 * 110.88258 * 3.88200 * 12 10 8 14 14 C 1.55152 * 111.00653 * 240.00469 * 12 10 8 15 15 C 1.54327 * 102.94089 * 206.38343 * 14 12 10 16 16 N 1.47021 * 107.27163 * 22.19076 * 15 14 12 17 17 C 1.36932 * 125.64658 * 181.02540 * 16 15 14 18 18 H 1.08003 * 119.99978 * 187.10784 * 17 16 15 19 19 C 1.38810 * 120.00358 * 7.10866 * 17 16 15 20 20 N 1.31625 * 119.99949 * 9.18186 * 19 17 16 21 21 Si 1.86800 * 120.00380 * 189.17719 * 19 17 16 22 22 H 1.48497 * 109.47145 * 265.04740 * 21 19 17 23 23 H 1.48502 * 109.46888 * 145.04264 * 21 19 17 24 24 H 1.48500 * 109.46581 * 25.04559 * 21 19 17 25 25 C 1.47425 * 108.70421 * 1.28412 * 16 15 14 26 26 H 1.07988 * 119.99827 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99468 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99840 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47125 * 54.42268 * 5 3 2 30 30 H 1.08997 * 109.47562 * 174.42431 * 5 3 2 31 31 H 1.09000 * 109.46692 * 65.72532 * 6 5 3 32 32 H 1.08997 * 109.47033 * 185.71980 * 6 5 3 33 33 H 1.08994 * 109.47399 * 305.72319 * 6 5 3 34 34 H 1.08994 * 109.46558 * 306.19507 * 7 3 2 35 35 H 1.09000 * 109.47139 * 186.19764 * 7 3 2 36 36 H 1.08994 * 109.46858 * 269.99569 * 11 10 8 37 37 H 1.08997 * 109.47526 * 29.99775 * 11 10 8 38 38 H 1.09001 * 109.46859 * 150.00428 * 11 10 8 39 39 H 1.08999 * 110.72569 * 88.01940 * 14 12 10 40 40 H 1.09000 * 110.71982 * 324.74296 * 14 12 10 41 41 H 1.08996 * 109.87834 * 262.76867 * 15 14 12 42 42 H 1.09000 * 109.87918 * 141.60970 * 15 14 12 43 43 H 0.96996 * 120.00434 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.36401 * 94.48403 * 25 16 15 45 45 H 1.08999 * 110.36709 * 216.80726 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0562 1.4453 2.4945 7 6 2.9433 1.3861 -1.2492 8 6 2.0696 1.4596 -2.4749 9 8 0.8661 1.5530 -2.3571 10 7 2.6255 1.4217 -3.7020 11 6 4.0792 1.3083 -3.8444 12 6 1.7762 1.4925 -4.8936 13 1 0.7320 1.6416 -4.6182 14 6 1.9440 0.2250 -5.7725 15 6 1.5841 0.7333 -7.1845 16 7 1.7764 2.1909 -7.1859 17 6 1.5449 3.0254 -8.2466 18 1 1.8249 4.0667 -8.1856 19 6 0.9504 2.5330 -9.4002 20 7 0.4458 1.3174 -9.4132 21 14 0.8662 3.5956 -10.9343 22 1 -0.4433 4.2942 -10.9813 23 1 1.0140 2.7390 -12.1384 24 1 1.9612 4.5981 -10.9025 25 6 2.2658 2.6045 -5.8581 26 1 -0.5399 -0.9352 0.0004 27 1 -0.5399 0.9354 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 3.5834 0.5054 1.3006 30 1 3.5615 2.2824 1.2008 31 1 1.5129 0.5061 2.5985 32 1 2.6775 1.6051 3.3758 33 1 1.3465 2.2667 2.3965 34 1 3.5756 0.5002 -1.3063 35 1 3.5695 2.2766 -1.1955 36 1 4.5200 2.3047 -3.8751 37 1 4.4855 0.7572 -2.9963 38 1 4.3136 0.7788 -4.7678 39 1 1.2540 -0.5574 -5.4567 40 1 2.9735 -0.1319 -5.7419 41 1 0.5443 0.4963 -7.4098 42 1 2.2399 0.2721 -7.9228 43 1 0.0306 0.9731 -10.2194 44 1 3.3544 2.6598 -5.8555 45 1 1.8356 3.5659 -5.5778 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567918375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:01 Heat of formation + Delta-G solvation = 1.717498 kcal Electronic energy + Delta-G solvation = -22547.031040 eV Core-core repulsion = 19372.582880 eV Total energy + Delta-G solvation = -3174.448160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.97651 -37.72035 -36.47794 -34.72534 -32.20058 -31.83966 -30.44770 -29.12064 -27.52515 -26.57641 -25.00993 -23.98736 -21.78698 -20.52982 -20.11620 -19.59711 -18.62337 -16.95356 -16.94010 -15.87419 -15.65031 -14.80214 -14.71577 -14.55125 -14.29174 -13.87867 -13.49279 -13.39583 -12.86285 -12.77061 -12.43454 -12.40019 -12.23656 -12.02710 -11.86653 -11.76167 -11.42897 -11.31024 -10.91217 -10.90034 -10.81407 -10.73366 -10.56742 -10.23662 -10.07970 -9.81813 -9.73309 -9.53992 -9.10695 -8.64087 -8.26314 -6.81962 -5.68919 -3.06951 2.44373 2.88770 3.22258 3.40842 3.46172 3.48396 4.50716 4.55048 4.64349 4.74970 5.04184 5.10479 5.15578 5.27206 5.35576 5.36478 5.38843 5.45284 5.56898 5.59975 5.64561 5.69344 5.74887 5.76536 5.80042 5.80480 5.92472 5.97472 6.07065 6.19378 6.23426 6.33605 6.52098 6.61096 6.72891 6.74965 6.94190 7.01879 7.43969 7.65988 7.69024 7.83240 8.27058 8.45535 9.20292 9.81720 10.47197 11.39414 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037827 B = 0.003341 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.025176 B = 8378.223925 C = 8535.567489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.154 4.154 3 C -0.046 4.046 4 H 0.083 0.917 5 C -0.115 4.115 6 C -0.150 4.150 7 C -0.132 4.132 8 C 0.510 3.490 9 O -0.536 6.536 10 N -0.605 5.605 11 C 0.076 3.924 12 C 0.124 3.876 13 H 0.106 0.894 14 C -0.151 4.151 15 C 0.170 3.830 16 N -0.601 5.601 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.918 5.918 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.131 3.869 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.027 0.973 43 H 0.252 0.748 44 H 0.022 0.978 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.867 -2.731 20.116 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.065 4.065 4 H 0.101 0.899 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.172 4.172 8 C 0.298 3.702 9 O -0.413 6.413 10 N -0.338 5.338 11 C -0.067 4.067 12 C 0.020 3.980 13 H 0.124 0.876 14 C -0.190 4.190 15 C 0.045 3.955 16 N -0.328 5.328 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.004 3.996 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.063 0.937 44 H 0.039 0.961 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.135 -2.695 19.949 21.358 hybrid contribution 0.110 0.385 -1.050 1.124 sum 7.246 -2.309 18.899 20.372 Atomic orbital electron populations 1.23735 0.95974 1.01406 0.99028 1.22642 0.95999 0.97070 1.01527 1.20185 0.96652 0.97136 0.92484 0.89898 1.21539 0.97844 1.01834 0.94079 1.21753 0.99791 1.02134 0.97091 1.21744 0.98678 1.03916 0.92865 1.20602 0.88976 0.76301 0.84354 1.90686 1.15039 1.49299 1.86239 1.47861 1.07311 1.72561 1.06023 1.21762 0.80352 1.01669 1.02917 1.22469 0.95544 0.96834 0.83117 0.87622 1.23187 1.00504 0.96842 0.98450 1.21247 1.01286 0.83430 0.89503 1.44393 1.77567 1.03211 1.07590 1.19034 1.33562 0.91995 0.91190 0.90471 1.24828 0.99923 0.97028 0.98638 1.69953 1.42645 1.16340 1.27551 0.86106 0.77734 0.79155 0.82805 1.21591 1.21614 1.20637 1.21807 0.96356 0.95277 0.86185 0.89235 0.88507 0.88184 0.91929 0.91873 0.92515 0.93033 0.92736 0.89199 0.88896 0.92599 0.91496 0.90535 0.91972 0.92347 0.91355 0.95444 0.93732 0.96055 0.94178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 13.42 29.01 0.39 -1.60 16 2 C -0.15 -1.72 7.01 -36.03 -0.25 -1.97 16 3 C -0.05 -0.47 1.80 -91.77 -0.17 -0.64 16 4 H 0.08 1.00 7.47 -51.93 -0.39 0.62 16 5 C -0.12 -0.90 5.39 -26.73 -0.14 -1.05 16 6 C -0.15 -1.15 9.64 37.16 0.36 -0.80 16 7 C -0.13 -1.35 3.87 -27.88 -0.11 -1.46 16 8 C 0.51 7.62 7.37 -10.99 -0.08 7.54 16 9 O -0.54 -9.96 13.85 5.56 0.08 -9.88 16 10 N -0.60 -9.17 2.91 -171.35 -0.50 -9.66 16 11 C 0.08 0.87 8.87 59.85 0.53 1.40 16 12 C 0.12 2.37 3.47 -65.67 -0.23 2.14 16 13 H 0.11 2.29 7.02 -51.92 -0.36 1.93 16 14 C -0.15 -2.91 6.51 -24.90 -0.16 -3.08 16 15 C 0.17 4.20 5.49 -3.06 -0.02 4.18 16 16 N -0.60 -15.64 3.39 -169.94 -0.58 -16.22 16 17 C -0.23 -6.50 10.25 -15.06 -0.15 -6.65 16 18 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 19 C -0.01 -0.22 5.43 -17.43 -0.09 -0.31 16 20 N -0.92 -27.26 10.53 55.49 0.58 -26.68 16 21 Si 0.91 22.28 29.56 -169.99 -5.03 17.25 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.13 2.79 6.79 -2.41 -0.02 2.78 16 26 H 0.09 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.10 1.25 7.83 -52.48 -0.41 0.84 16 28 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.45 7.59 -51.93 -0.39 0.06 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.76 7.09 -51.93 -0.37 0.39 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.07 0.56 6.28 -51.93 -0.33 0.23 16 38 H 0.08 0.92 6.41 -51.93 -0.33 0.59 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.01 6.39 -51.93 -0.33 0.68 16 41 H 0.07 1.89 6.78 -51.93 -0.35 1.54 16 42 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 44 H 0.02 0.43 7.01 -51.93 -0.36 0.07 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -32.21 352.17 -8.10 -40.31 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.82 Total: -0.92 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.14 Total: 0.49 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.49 Total: -52.56 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.21 -8.10 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567918375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.030 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds