Wall clock time and date at job start Tue Mar 31 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00243 * 2 1 4 4 H 1.09005 * 109.47322 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47341 * 119.99828 * 3 2 1 6 6 C 1.53004 * 109.47105 * 294.42253 * 5 3 2 7 7 C 1.53004 * 109.47433 * 239.99962 * 3 2 1 8 8 C 1.50697 * 109.46893 * 66.19483 * 7 3 2 9 9 O 1.21281 * 120.00491 * 5.71845 * 8 7 3 10 10 N 1.34776 * 119.99980 * 185.72058 * 8 7 3 11 11 C 1.46503 * 119.99694 * 0.02562 * 10 8 7 12 12 C 1.46500 * 120.00451 * 179.97438 * 10 8 7 13 13 H 1.09009 * 110.88258 * 3.88200 * 12 10 8 14 14 C 1.55152 * 111.00653 * 240.00469 * 12 10 8 15 15 C 1.54327 * 102.94089 * 206.38343 * 14 12 10 16 16 N 1.47021 * 107.27163 * 22.19076 * 15 14 12 17 17 C 1.36932 * 125.64658 * 181.02540 * 16 15 14 18 18 H 1.08003 * 119.99978 * 187.10784 * 17 16 15 19 19 C 1.38810 * 120.00358 * 7.10866 * 17 16 15 20 20 N 1.31625 * 119.99949 * 9.18186 * 19 17 16 21 21 Si 1.86800 * 120.00380 * 189.17719 * 19 17 16 22 22 H 1.48497 * 109.47145 * 265.04740 * 21 19 17 23 23 H 1.48502 * 109.46888 * 145.04264 * 21 19 17 24 24 H 1.48500 * 109.46581 * 25.04559 * 21 19 17 25 25 C 1.47425 * 108.70421 * 1.28412 * 16 15 14 26 26 H 1.07988 * 119.99827 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99468 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99840 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47125 * 54.42268 * 5 3 2 30 30 H 1.08997 * 109.47562 * 174.42431 * 5 3 2 31 31 H 1.09000 * 109.46692 * 65.72532 * 6 5 3 32 32 H 1.08997 * 109.47033 * 185.71980 * 6 5 3 33 33 H 1.08994 * 109.47399 * 305.72319 * 6 5 3 34 34 H 1.08994 * 109.46558 * 306.19507 * 7 3 2 35 35 H 1.09000 * 109.47139 * 186.19764 * 7 3 2 36 36 H 1.08994 * 109.46858 * 269.99569 * 11 10 8 37 37 H 1.08997 * 109.47526 * 29.99775 * 11 10 8 38 38 H 1.09001 * 109.46859 * 150.00428 * 11 10 8 39 39 H 1.08999 * 110.72569 * 88.01940 * 14 12 10 40 40 H 1.09000 * 110.71982 * 324.74296 * 14 12 10 41 41 H 1.08996 * 109.87834 * 262.76867 * 15 14 12 42 42 H 1.09000 * 109.87918 * 141.60970 * 15 14 12 43 43 H 0.96996 * 120.00434 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.36401 * 94.48403 * 25 16 15 45 45 H 1.08999 * 110.36709 * 216.80726 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0562 1.4453 2.4945 7 6 2.9433 1.3861 -1.2492 8 6 2.0696 1.4596 -2.4749 9 8 0.8661 1.5530 -2.3571 10 7 2.6255 1.4217 -3.7020 11 6 4.0792 1.3083 -3.8444 12 6 1.7762 1.4925 -4.8936 13 1 0.7320 1.6416 -4.6182 14 6 1.9440 0.2250 -5.7725 15 6 1.5841 0.7333 -7.1845 16 7 1.7764 2.1909 -7.1859 17 6 1.5449 3.0254 -8.2466 18 1 1.8249 4.0667 -8.1856 19 6 0.9504 2.5330 -9.4002 20 7 0.4458 1.3174 -9.4132 21 14 0.8662 3.5956 -10.9343 22 1 -0.4433 4.2942 -10.9813 23 1 1.0140 2.7390 -12.1384 24 1 1.9612 4.5981 -10.9025 25 6 2.2658 2.6045 -5.8581 26 1 -0.5399 -0.9352 0.0004 27 1 -0.5399 0.9354 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 3.5834 0.5054 1.3006 30 1 3.5615 2.2824 1.2008 31 1 1.5129 0.5061 2.5985 32 1 2.6775 1.6051 3.3758 33 1 1.3465 2.2667 2.3965 34 1 3.5756 0.5002 -1.3063 35 1 3.5695 2.2766 -1.1955 36 1 4.5200 2.3047 -3.8751 37 1 4.4855 0.7572 -2.9963 38 1 4.3136 0.7788 -4.7678 39 1 1.2540 -0.5574 -5.4567 40 1 2.9735 -0.1319 -5.7419 41 1 0.5443 0.4963 -7.4098 42 1 2.2399 0.2721 -7.9228 43 1 0.0306 0.9731 -10.2194 44 1 3.3544 2.6598 -5.8555 45 1 1.8356 3.5659 -5.5778 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567918375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:01 Heat of formation + Delta-G solvation = -17.255609 kcal Electronic energy + Delta-G solvation = -22547.853776 eV Core-core repulsion = 19372.582880 eV Total energy + Delta-G solvation = -3175.270896 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18676 -39.18717 -37.52668 -36.16904 -34.10349 -32.59961 -31.62247 -30.80672 -29.08400 -27.71003 -26.58103 -25.30849 -22.52682 -22.09130 -21.88440 -20.53102 -19.83389 -18.94078 -18.16053 -17.14083 -16.72427 -16.62136 -15.90135 -15.70403 -15.61121 -15.05866 -14.65264 -14.42754 -14.19807 -14.13747 -13.96587 -13.72560 -13.63928 -13.15205 -12.90597 -12.87944 -12.83278 -12.74116 -12.29566 -12.18810 -12.04101 -12.01242 -11.96493 -11.81130 -11.63769 -11.51025 -11.31592 -10.78205 -10.71089 -10.04508 -9.55307 -8.91541 -7.85105 -5.26405 1.45162 1.46961 1.54578 1.56722 1.76061 2.03299 2.49610 3.29858 3.59748 3.68188 3.86289 3.92528 3.95349 3.99864 4.19616 4.31493 4.40016 4.43331 4.49500 4.54198 4.55603 4.67077 4.70170 4.77735 4.81745 4.86079 4.94722 5.02947 5.06748 5.10915 5.11240 5.17414 5.22559 5.37753 5.43854 5.50546 5.55369 5.63149 5.73145 5.84649 6.07742 6.18021 6.55006 7.05174 7.30519 7.72377 8.36832 9.21757 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037827 B = 0.003341 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.025176 B = 8378.223925 C = 8535.567489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.147 4.147 3 C -0.047 4.047 4 H 0.056 0.944 5 C -0.108 4.108 6 C -0.152 4.152 7 C -0.121 4.121 8 C 0.501 3.499 9 O -0.581 6.581 10 N -0.605 5.605 11 C 0.068 3.932 12 C 0.140 3.860 13 H 0.072 0.928 14 C -0.131 4.131 15 C 0.178 3.822 16 N -0.624 5.624 17 C -0.246 4.246 18 H 0.082 0.918 19 C -0.065 4.065 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.266 1.266 25 C 0.133 3.867 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.027 0.973 42 H 0.003 0.997 43 H 0.248 0.752 44 H 0.046 0.954 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.900 -2.625 21.661 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.165 4.165 3 C -0.066 4.066 4 H 0.074 0.926 5 C -0.145 4.145 6 C -0.210 4.210 7 C -0.160 4.160 8 C 0.292 3.708 9 O -0.461 6.461 10 N -0.337 5.337 11 C -0.073 4.073 12 C 0.034 3.966 13 H 0.090 0.910 14 C -0.170 4.170 15 C 0.052 3.948 16 N -0.350 5.350 17 C -0.375 4.375 18 H 0.100 0.900 19 C -0.259 4.259 20 N -0.597 5.597 21 Si 0.808 3.192 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.191 1.191 25 C 0.007 3.993 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.136 0.864 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.021 0.979 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 10.216 -2.574 21.537 23.976 hybrid contribution -0.839 0.380 -1.475 1.738 sum 9.377 -2.195 20.062 22.254 Atomic orbital electron populations 1.23729 0.96802 1.00828 1.01249 1.22929 0.95729 0.98316 0.99505 1.20203 0.96680 0.95591 0.94094 0.92581 1.21507 0.97445 1.03364 0.92225 1.21768 0.99879 1.01372 0.97954 1.21807 0.98037 1.06629 0.89567 1.21565 0.89022 0.74912 0.85318 1.90686 1.17432 1.51123 1.86842 1.47903 1.08641 1.72475 1.04671 1.22083 0.77571 1.03149 1.04510 1.21889 0.94715 0.95511 0.84437 0.91008 1.22987 1.02271 0.96917 0.94841 1.20990 0.98350 0.83214 0.92197 1.44683 1.77688 1.03672 1.08970 1.19435 1.33197 0.92641 0.92229 0.90018 1.25718 0.99999 0.98452 1.01699 1.70181 1.43560 1.18041 1.27902 0.85037 0.77899 0.77605 0.78620 1.21470 1.21774 1.19087 1.21919 0.97298 0.95478 0.84652 0.88713 0.90462 0.86394 0.90186 0.90403 0.93204 0.91587 0.93838 0.86048 0.86125 0.91293 0.87429 0.91109 0.91392 0.89397 0.95445 0.97913 0.94279 0.93606 0.95232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.65 13.42 67.78 0.91 -3.74 16 2 C -0.15 -3.05 7.01 25.64 0.18 -2.87 16 3 C -0.05 -0.85 1.80 -11.54 -0.02 -0.87 16 4 H 0.06 1.34 7.47 -2.38 -0.02 1.32 16 5 C -0.11 -1.30 5.39 30.60 0.16 -1.14 16 6 C -0.15 -2.04 9.64 71.98 0.69 -1.35 16 7 C -0.12 -1.99 3.87 29.85 0.12 -1.87 16 8 C 0.50 14.00 7.37 87.66 0.65 14.64 16 9 O -0.58 -21.76 13.85 -3.03 -0.04 -21.80 16 10 N -0.60 -16.86 2.91 -814.41 -2.37 -19.23 16 11 C 0.07 1.24 8.87 127.77 1.13 2.38 16 12 C 0.14 5.30 3.47 46.46 0.16 5.46 16 13 H 0.07 3.22 7.02 -2.38 -0.02 3.21 16 14 C -0.13 -5.00 6.51 31.78 0.21 -4.79 16 15 C 0.18 9.04 5.49 86.73 0.48 9.51 16 16 N -0.62 -33.05 3.39 -691.56 -2.35 -35.39 16 17 C -0.25 -14.15 10.25 84.03 0.86 -13.29 16 18 H 0.08 4.49 7.85 -2.91 -0.02 4.46 16 19 C -0.07 -3.80 5.43 84.86 0.46 -3.34 16 20 N -0.95 -58.27 10.53 21.65 0.23 -58.04 16 21 Si 0.98 46.40 29.56 68.60 2.03 48.43 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 C 0.13 5.61 6.79 86.93 0.59 6.20 16 26 H 0.09 2.13 8.06 -2.92 -0.02 2.11 16 27 H 0.08 2.16 7.83 -2.91 -0.02 2.13 16 28 H 0.12 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.73 7.59 -2.39 -0.02 0.71 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.04 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.12 1.31 7.09 -2.39 -0.02 1.29 16 35 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.11 1.11 6.28 -2.39 -0.02 1.10 16 38 H 0.07 1.41 6.41 -2.39 -0.02 1.39 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.09 2.85 6.39 -2.39 -0.02 2.83 16 41 H 0.03 1.60 6.78 -2.39 -0.02 1.59 16 42 H 0.00 0.15 8.06 -2.39 -0.02 0.13 16 43 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.05 1.74 7.01 -2.39 -0.02 1.73 16 45 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -74.07 352.17 5.01 -69.06 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.93 Total: 12.05 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 6.58 Total: 4.93 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -4.49 Total: -112.66 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.04 Total: -21.80 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -74.07 5.01 -69.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567918375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.805 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds