Wall clock time and date at job start Tue Mar 31 2020 01:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 120.00148 * 2 1 4 4 H 1.08993 * 109.46988 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47487 * 240.00112 * 3 2 1 6 6 C 1.53002 * 109.46665 * 65.00045 * 5 3 2 7 7 C 1.53008 * 109.46979 * 120.00495 * 3 2 1 8 8 C 1.50693 * 109.47213 * 185.00230 * 7 3 2 9 9 O 1.21287 * 120.00273 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00474 * 180.02562 * 8 7 3 11 11 C 1.46499 * 120.00560 * 179.97438 * 10 8 7 12 12 C 1.52996 * 110.64037 * 303.14213 * 11 10 8 13 13 C 1.55153 * 110.72371 * 179.97438 * 11 10 8 14 14 C 1.54913 * 101.58439 * 277.14065 * 13 11 10 15 15 N 1.47427 * 104.82892 * 322.98978 * 14 13 11 16 16 C 1.36931 * 125.64401 * 204.08931 * 15 14 13 17 17 H 1.07996 * 120.00365 * 210.12216 * 16 15 14 18 18 C 1.38814 * 120.00174 * 30.12940 * 16 15 14 19 19 N 1.31624 * 120.00255 * 196.24190 * 18 16 15 20 20 Si 1.86799 * 119.99872 * 16.23552 * 18 16 15 21 21 H 1.48503 * 109.47275 * 273.58103 * 20 18 16 22 22 H 1.48495 * 109.47305 * 33.58556 * 20 18 16 23 23 H 1.48506 * 109.47132 * 153.58731 * 20 18 16 24 24 C 1.47024 * 108.70353 * 24.35553 * 15 14 13 25 25 H 1.08001 * 119.99794 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00124 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99614 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47681 * 185.00114 * 5 3 2 29 29 H 1.09002 * 109.46993 * 305.00614 * 5 3 2 30 30 H 1.09002 * 109.46903 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.47538 * 300.00090 * 6 5 3 32 32 H 1.09002 * 109.46950 * 60.00543 * 6 5 3 33 33 H 1.09003 * 109.46888 * 65.00071 * 7 3 2 34 34 H 1.08998 * 109.46909 * 305.00291 * 7 3 2 35 35 H 0.97004 * 119.99618 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47142 * 296.85555 * 12 11 10 37 37 H 1.08995 * 109.47253 * 56.85227 * 12 11 10 38 38 H 1.09000 * 109.47425 * 176.85577 * 12 11 10 39 39 H 1.08992 * 111.00635 * 159.05938 * 13 11 10 40 40 H 1.09005 * 111.00187 * 35.21140 * 13 11 10 41 41 H 1.08995 * 110.36407 * 204.14705 * 14 13 11 42 42 H 1.09003 * 110.45532 * 81.87323 * 14 13 11 43 43 H 0.96994 * 119.99954 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.87590 * 118.13236 * 24 15 14 45 45 H 1.08994 * 109.87693 * 239.29172 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0563 1.4308 -2.4952 7 6 2.9432 1.3860 1.2492 8 6 3.6021 2.7397 1.3128 9 8 3.3894 3.5591 0.4442 10 7 4.4285 3.0398 2.3343 11 6 5.0695 4.3557 2.3958 12 6 5.8785 4.6215 1.1247 13 6 5.9701 4.4694 3.6541 14 6 4.9360 4.8483 4.7436 15 7 3.9827 5.7441 4.0637 16 6 3.1929 6.6808 4.6750 17 1 2.2334 6.9378 4.2512 18 6 3.6255 7.3002 5.8395 19 7 2.7669 7.9471 6.5990 20 14 5.4263 7.2155 6.3289 21 1 5.6708 5.9726 7.1039 22 1 6.2714 7.2119 5.1079 23 1 5.7682 8.3949 7.1641 24 6 4.0157 5.4605 2.6214 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 3.5541 2.2878 -1.2056 29 1 3.5905 0.5104 -1.2952 30 1 2.6830 1.4881 -3.3853 31 1 1.4454 0.5291 -2.5390 32 1 1.4089 2.3065 -2.4493 33 1 3.7086 0.6111 1.2055 34 1 2.3280 1.2392 2.1370 35 1 4.5989 2.3844 3.0288 36 1 6.6843 3.8915 1.0476 37 1 5.2270 4.5367 0.2550 38 1 6.3006 5.6256 1.1659 39 1 6.7147 5.2558 3.5318 40 1 6.4456 3.5153 3.8817 41 1 5.4255 5.3693 5.5663 42 1 4.4249 3.9579 5.1098 43 1 3.0691 8.3795 7.4129 44 1 3.0367 5.1154 2.2890 45 1 4.3000 6.3589 2.0736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569646380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:04 Heat of formation + Delta-G solvation = 1.380657 kcal Electronic energy + Delta-G solvation = -22955.542240 eV Core-core repulsion = 19781.079473 eV Total energy + Delta-G solvation = -3174.462767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.20389 -38.11009 -36.48826 -34.07725 -32.17260 -31.87440 -30.98507 -29.68092 -28.96265 -26.17169 -24.82116 -23.41489 -21.95774 -20.90257 -20.58129 -19.67929 -19.10205 -17.20820 -16.72837 -15.72611 -15.63264 -15.23719 -14.85627 -14.81439 -14.22855 -13.56070 -13.40970 -13.36122 -13.27400 -12.93840 -12.71695 -12.50563 -12.34825 -11.99165 -11.90333 -11.51655 -11.49265 -11.26682 -11.18300 -11.06324 -10.78735 -10.76238 -10.68198 -10.56788 -10.37781 -9.81826 -9.52754 -9.43804 -9.18258 -8.74976 -8.51980 -6.88514 -5.94571 -3.33622 2.14331 2.87117 3.27802 3.38469 3.43911 3.48665 4.51899 4.62372 4.65913 4.84723 4.96507 5.00283 5.12245 5.18936 5.24564 5.29174 5.34190 5.38546 5.40063 5.47099 5.66616 5.73343 5.82883 5.85199 5.89888 5.93119 5.97534 6.03738 6.06569 6.22157 6.27128 6.33544 6.36910 6.44609 6.51930 6.53973 6.68550 6.71599 6.78943 7.03547 7.76089 7.86512 8.35413 8.49009 8.87032 9.68702 10.23105 11.22288 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.004200 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.532683 B = 6664.362550 C = 7093.872067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C -0.045 4.045 4 H 0.083 0.917 5 C -0.120 4.120 6 C -0.147 4.147 7 C -0.135 4.135 8 C 0.515 3.485 9 O -0.532 6.532 10 N -0.714 5.714 11 C 0.160 3.840 12 C -0.152 4.152 13 C -0.137 4.137 14 C 0.113 3.887 15 N -0.610 5.610 16 C -0.241 4.241 17 H 0.086 0.914 18 C 0.024 3.976 19 N -0.911 5.911 20 Si 0.898 3.102 21 H -0.286 1.286 22 H -0.274 1.274 23 H -0.305 1.305 24 C 0.137 3.863 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.396 0.604 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.030 0.970 43 H 0.264 0.736 44 H 0.040 0.960 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -17.395 -12.680 21.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.163 4.163 3 C -0.064 4.064 4 H 0.102 0.898 5 C -0.158 4.158 6 C -0.205 4.205 7 C -0.175 4.175 8 C 0.302 3.698 9 O -0.409 6.409 10 N -0.365 5.365 11 C 0.074 3.926 12 C -0.210 4.210 13 C -0.176 4.176 14 C -0.011 4.011 15 N -0.338 5.338 16 C -0.369 4.369 17 H 0.104 0.896 18 C -0.175 4.175 19 N -0.555 5.555 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.200 1.200 23 H -0.233 1.233 24 C 0.011 3.989 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.124 0.876 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.230 0.770 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.416 -16.604 -13.133 21.444 hybrid contribution 1.029 -0.401 0.954 1.460 sum 4.445 -17.005 -12.179 21.384 Atomic orbital electron populations 1.23870 0.96000 1.01800 1.01293 1.22927 0.95916 0.97998 0.99469 1.20148 0.96964 0.95647 0.93667 0.89821 1.21647 0.98021 1.02742 0.93350 1.21729 0.99787 1.01564 0.97401 1.21697 1.00106 0.95282 1.00392 1.20520 0.78607 0.89322 0.81381 1.90633 1.61525 1.50156 1.38596 1.46049 1.47598 1.16411 1.26413 1.21310 0.93150 0.82936 0.95177 1.22064 0.99419 1.01354 0.98207 1.23116 0.97859 1.01585 0.95016 1.21979 0.90731 0.93940 0.94474 1.44675 1.47913 1.40309 1.00880 1.18611 0.97652 1.13514 1.07081 0.89641 1.25252 0.97470 0.97149 0.97591 1.69781 1.33474 1.38144 1.14080 0.86684 0.87349 0.75167 0.77713 1.21442 1.19982 1.23330 1.21739 0.96274 0.94454 0.86410 0.88685 0.88487 0.87598 0.89598 0.92890 0.93226 0.93122 0.92717 0.89185 0.88888 0.76972 0.93156 0.90058 0.91780 0.89913 0.90999 0.93756 0.95233 0.92660 0.94178 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 14.32 29.01 0.42 -1.30 16 2 C -0.15 -1.31 7.75 -36.03 -0.28 -1.59 16 3 C -0.05 -0.48 1.80 -91.77 -0.17 -0.65 16 4 H 0.08 1.07 7.60 -51.93 -0.39 0.68 16 5 C -0.12 -1.28 5.18 -26.73 -0.14 -1.42 16 6 C -0.15 -1.47 9.73 37.16 0.36 -1.11 16 7 C -0.13 -1.39 5.16 -27.88 -0.14 -1.54 16 8 C 0.52 7.19 6.72 -10.99 -0.07 7.11 16 9 O -0.53 -9.02 10.96 5.55 0.06 -8.96 16 10 N -0.71 -9.88 5.14 -45.91 -0.24 -10.12 16 11 C 0.16 2.64 0.81 -129.98 -0.11 2.54 16 12 C -0.15 -2.24 8.44 37.16 0.31 -1.93 16 13 C -0.14 -2.26 6.07 -24.58 -0.15 -2.41 16 14 C 0.11 2.41 6.20 -2.53 -0.02 2.40 16 15 N -0.61 -15.12 3.06 -170.06 -0.52 -15.64 16 16 C -0.24 -7.04 10.55 -15.06 -0.16 -7.20 16 17 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 18 C 0.02 0.72 5.47 -17.43 -0.10 0.63 16 19 N -0.91 -28.50 13.97 55.49 0.78 -27.72 16 20 Si 0.90 22.86 24.74 -169.99 -4.21 18.65 16 21 H -0.29 -6.96 6.61 56.52 0.37 -6.59 16 22 H -0.27 -6.76 7.10 56.52 0.40 -6.36 16 23 H -0.30 -7.86 7.11 56.52 0.40 -7.45 16 24 C 0.14 2.94 6.19 -3.06 -0.02 2.92 16 25 H 0.09 0.71 8.06 -52.49 -0.42 0.28 16 26 H 0.10 0.91 7.83 -52.49 -0.41 0.50 16 27 H 0.11 0.82 8.06 -52.49 -0.42 0.39 16 28 H 0.09 1.11 5.88 -51.93 -0.31 0.80 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.46 7.38 -51.93 -0.38 0.08 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.40 4.49 8.49 -40.82 -0.35 4.14 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.29 5.96 -51.93 -0.31 0.98 16 38 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 40 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.04 1.03 2.33 -51.93 -0.12 0.91 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 44 H 0.04 0.92 6.90 -51.93 -0.36 0.56 16 45 H 0.04 0.85 7.78 -51.93 -0.40 0.45 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -32.71 346.89 -6.83 -39.54 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.68 Total: 2.57 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.25 Total: -3.55 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.02 Total: -53.48 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.06 Total: -8.96 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.21 Total: 18.65 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.71 -6.83 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569646380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.919 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds