Wall clock time and date at job start Tue Mar 31 2020 01:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 120.00148 * 2 1 4 4 H 1.08993 * 109.46988 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47487 * 240.00112 * 3 2 1 6 6 C 1.53002 * 109.46665 * 65.00045 * 5 3 2 7 7 C 1.53008 * 109.46979 * 120.00495 * 3 2 1 8 8 C 1.50693 * 109.47213 * 185.00230 * 7 3 2 9 9 O 1.21287 * 120.00273 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00474 * 180.02562 * 8 7 3 11 11 C 1.46499 * 120.00560 * 179.97438 * 10 8 7 12 12 C 1.52996 * 110.64037 * 303.14213 * 11 10 8 13 13 C 1.55153 * 110.72371 * 179.97438 * 11 10 8 14 14 C 1.54913 * 101.58439 * 277.14065 * 13 11 10 15 15 N 1.47427 * 104.82892 * 322.98978 * 14 13 11 16 16 C 1.36931 * 125.64401 * 204.08931 * 15 14 13 17 17 H 1.07996 * 120.00365 * 210.12216 * 16 15 14 18 18 C 1.38814 * 120.00174 * 30.12940 * 16 15 14 19 19 N 1.31624 * 120.00255 * 196.24190 * 18 16 15 20 20 Si 1.86799 * 119.99872 * 16.23552 * 18 16 15 21 21 H 1.48503 * 109.47275 * 273.58103 * 20 18 16 22 22 H 1.48495 * 109.47305 * 33.58556 * 20 18 16 23 23 H 1.48506 * 109.47132 * 153.58731 * 20 18 16 24 24 C 1.47024 * 108.70353 * 24.35553 * 15 14 13 25 25 H 1.08001 * 119.99794 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00124 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99614 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47681 * 185.00114 * 5 3 2 29 29 H 1.09002 * 109.46993 * 305.00614 * 5 3 2 30 30 H 1.09002 * 109.46903 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.47538 * 300.00090 * 6 5 3 32 32 H 1.09002 * 109.46950 * 60.00543 * 6 5 3 33 33 H 1.09003 * 109.46888 * 65.00071 * 7 3 2 34 34 H 1.08998 * 109.46909 * 305.00291 * 7 3 2 35 35 H 0.97004 * 119.99618 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47142 * 296.85555 * 12 11 10 37 37 H 1.08995 * 109.47253 * 56.85227 * 12 11 10 38 38 H 1.09000 * 109.47425 * 176.85577 * 12 11 10 39 39 H 1.08992 * 111.00635 * 159.05938 * 13 11 10 40 40 H 1.09005 * 111.00187 * 35.21140 * 13 11 10 41 41 H 1.08995 * 110.36407 * 204.14705 * 14 13 11 42 42 H 1.09003 * 110.45532 * 81.87323 * 14 13 11 43 43 H 0.96994 * 119.99954 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.87590 * 118.13236 * 24 15 14 45 45 H 1.08994 * 109.87693 * 239.29172 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0563 1.4308 -2.4952 7 6 2.9432 1.3860 1.2492 8 6 3.6021 2.7397 1.3128 9 8 3.3894 3.5591 0.4442 10 7 4.4285 3.0398 2.3343 11 6 5.0695 4.3557 2.3958 12 6 5.8785 4.6215 1.1247 13 6 5.9701 4.4694 3.6541 14 6 4.9360 4.8483 4.7436 15 7 3.9827 5.7441 4.0637 16 6 3.1929 6.6808 4.6750 17 1 2.2334 6.9378 4.2512 18 6 3.6255 7.3002 5.8395 19 7 2.7669 7.9471 6.5990 20 14 5.4263 7.2155 6.3289 21 1 5.6708 5.9726 7.1039 22 1 6.2714 7.2119 5.1079 23 1 5.7682 8.3949 7.1641 24 6 4.0157 5.4605 2.6214 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 3.5541 2.2878 -1.2056 29 1 3.5905 0.5104 -1.2952 30 1 2.6830 1.4881 -3.3853 31 1 1.4454 0.5291 -2.5390 32 1 1.4089 2.3065 -2.4493 33 1 3.7086 0.6111 1.2055 34 1 2.3280 1.2392 2.1370 35 1 4.5989 2.3844 3.0288 36 1 6.6843 3.8915 1.0476 37 1 5.2270 4.5367 0.2550 38 1 6.3006 5.6256 1.1659 39 1 6.7147 5.2558 3.5318 40 1 6.4456 3.5153 3.8817 41 1 5.4255 5.3693 5.5663 42 1 4.4249 3.9579 5.1098 43 1 3.0691 8.3795 7.4129 44 1 3.0367 5.1154 2.2890 45 1 4.3000 6.3589 2.0736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569646380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:03 Heat of formation + Delta-G solvation = -20.727984 kcal Electronic energy + Delta-G solvation = -22956.500943 eV Core-core repulsion = 19781.079473 eV Total energy + Delta-G solvation = -3175.421469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41400 -39.43717 -37.50203 -35.68859 -33.97895 -32.62507 -32.43925 -30.88196 -30.37939 -27.94798 -25.82937 -25.02489 -22.81331 -22.70992 -21.68746 -20.50715 -20.37174 -19.11301 -17.96801 -17.54954 -17.05087 -16.30257 -15.80397 -15.66612 -15.44457 -15.36937 -14.95369 -14.75414 -14.42753 -14.28800 -13.93464 -13.78689 -13.51921 -13.33274 -13.13278 -13.04834 -12.83077 -12.72691 -12.54752 -12.18025 -12.05191 -11.99311 -11.88233 -11.86244 -11.58573 -11.44692 -11.32220 -10.67714 -10.44194 -10.15989 -9.95683 -8.94457 -8.23320 -5.61082 1.24914 1.37959 1.43928 1.50281 1.79007 2.30421 2.37429 3.01884 3.27403 3.54170 3.78171 3.81325 3.85400 4.00874 4.15608 4.27572 4.41051 4.42264 4.45834 4.49352 4.60142 4.66297 4.67411 4.78926 4.80413 4.84226 4.94605 4.97950 4.99570 5.05114 5.07659 5.14073 5.19113 5.23925 5.35242 5.46431 5.51881 5.67912 5.75458 5.79343 5.98957 6.06955 6.70666 6.75886 7.42509 7.47652 8.08297 8.97777 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.004200 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.532683 B = 6664.362550 C = 7093.872067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.142 4.142 3 C -0.045 4.045 4 H 0.050 0.950 5 C -0.117 4.117 6 C -0.146 4.146 7 C -0.126 4.126 8 C 0.508 3.492 9 O -0.567 6.567 10 N -0.707 5.707 11 C 0.173 3.827 12 C -0.144 4.144 13 C -0.122 4.122 14 C 0.102 3.898 15 N -0.626 5.626 16 C -0.247 4.247 17 H 0.036 0.964 18 C -0.034 4.034 19 N -0.960 5.960 20 Si 0.971 3.029 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.310 1.310 24 C 0.135 3.865 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.131 0.869 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.413 0.587 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.032 0.968 42 H 0.042 0.958 43 H 0.265 0.735 44 H 0.012 0.988 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.737 -20.869 -12.795 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.160 4.160 3 C -0.064 4.064 4 H 0.068 0.932 5 C -0.154 4.154 6 C -0.203 4.203 7 C -0.165 4.165 8 C 0.297 3.703 9 O -0.447 6.447 10 N -0.360 5.360 11 C 0.086 3.914 12 C -0.202 4.202 13 C -0.160 4.160 14 C -0.021 4.021 15 N -0.354 5.354 16 C -0.376 4.376 17 H 0.054 0.946 18 C -0.229 4.229 19 N -0.606 5.606 20 Si 0.800 3.200 21 H -0.189 1.189 22 H -0.184 1.184 23 H -0.239 1.239 24 C 0.009 3.991 25 H 0.131 0.869 26 H 0.100 0.900 27 H 0.149 0.851 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.144 0.856 34 H 0.119 0.881 35 H 0.250 0.750 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.141 0.859 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.030 0.970 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 6.503 -20.135 -13.258 24.969 hybrid contribution -0.113 0.707 0.925 1.169 sum 6.389 -19.428 -12.333 23.883 Atomic orbital electron populations 1.23988 0.96281 1.02039 1.01219 1.22949 0.95812 0.97785 0.99466 1.20093 0.96606 0.95625 0.94112 0.93190 1.21588 0.97985 1.02382 0.93456 1.21711 0.99722 1.01237 0.97641 1.21714 1.00720 0.93741 1.00368 1.21226 0.78097 0.90353 0.80666 1.90637 1.62460 1.51576 1.39990 1.45950 1.47506 1.15588 1.26965 1.21065 0.91530 0.82402 0.96447 1.21987 0.99619 1.02291 0.96336 1.23111 0.96420 1.04243 0.92242 1.22214 0.91107 0.93240 0.95554 1.44747 1.47969 1.40149 1.02525 1.18438 0.96825 1.14993 1.07336 0.94635 1.26012 1.02425 0.96980 0.97486 1.69938 1.35876 1.39845 1.14899 0.85511 0.80756 0.75764 0.77939 1.18857 1.18373 1.23909 1.21793 0.96914 0.95909 0.84438 0.86858 0.89967 0.85144 0.92131 0.90743 0.92470 0.92032 0.94530 0.85601 0.88114 0.75036 0.89929 0.91693 0.91971 0.89587 0.85933 0.95020 0.94051 0.92576 0.96960 0.96157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.24 14.32 67.78 0.97 -2.27 16 2 C -0.14 -2.23 7.75 25.65 0.20 -2.03 16 3 C -0.05 -0.92 1.80 -11.54 -0.02 -0.94 16 4 H 0.05 1.34 7.60 -2.39 -0.02 1.32 16 5 C -0.12 -2.34 5.18 30.59 0.16 -2.18 16 6 C -0.15 -2.81 9.73 71.98 0.70 -2.11 16 7 C -0.13 -2.29 5.16 29.85 0.15 -2.14 16 8 C 0.51 13.52 6.72 87.65 0.59 14.11 16 9 O -0.57 -19.55 10.96 -3.05 -0.03 -19.58 16 10 N -0.71 -17.70 5.14 -417.56 -2.14 -19.85 16 11 C 0.17 5.30 0.81 4.79 0.00 5.31 16 12 C -0.14 -3.90 8.44 71.98 0.61 -3.29 16 13 C -0.12 -3.49 6.07 31.99 0.19 -3.30 16 14 C 0.10 4.09 6.20 86.86 0.54 4.63 16 15 N -0.63 -31.33 3.06 -691.96 -2.12 -33.44 16 16 C -0.25 -15.08 10.55 84.03 0.89 -14.20 16 17 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 18 C -0.03 -2.06 5.47 84.86 0.46 -1.60 16 19 N -0.96 -62.20 13.97 21.65 0.30 -61.90 16 20 Si 0.97 47.13 24.74 68.60 1.70 48.82 16 21 H -0.26 -11.61 6.61 99.48 0.66 -10.95 16 22 H -0.26 -11.81 7.10 99.48 0.71 -11.11 16 23 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 24 C 0.14 5.91 6.19 86.73 0.54 6.44 16 25 H 0.11 1.43 8.06 -2.91 -0.02 1.41 16 26 H 0.08 1.56 7.83 -2.91 -0.02 1.54 16 27 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 28 H 0.06 1.55 5.88 -2.39 -0.01 1.53 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.04 7.38 -2.39 -0.02 1.02 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.41 7.60 8.49 -92.71 -0.79 6.81 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 2.01 5.96 -2.39 -0.01 1.99 16 38 H 0.06 1.70 8.08 -2.39 -0.02 1.68 16 39 H 0.09 2.48 8.05 -2.39 -0.02 2.46 16 40 H 0.12 2.35 8.07 -2.38 -0.02 2.33 16 41 H 0.03 1.37 2.33 -2.39 -0.01 1.37 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 43 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 44 H 0.01 0.60 6.90 -2.39 -0.02 0.58 16 45 H 0.02 0.94 7.78 -2.39 -0.02 0.93 16 Total: -1.00 -76.40 346.89 3.81 -72.59 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.12 Total: 16.92 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.98 Total: -3.56 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -3.96 Total: -115.19 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.03 Total: -19.58 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.70 Total: 48.82 kcal Total: -76.40 3.81 -72.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569646380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.860 kcal (2) G-P(sol) polarization free energy of solvation -76.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds