Wall clock time and date at job start Tue Mar 31 2020 01:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99934 * 2 1 4 4 H 1.09000 * 109.47692 * 359.97438 * 3 2 1 5 5 C 1.53005 * 109.46910 * 119.99899 * 3 2 1 6 6 C 1.52990 * 109.46856 * 294.99575 * 5 3 2 7 7 C 1.53007 * 109.46889 * 239.99754 * 3 2 1 8 8 C 1.50697 * 109.47214 * 65.00388 * 7 3 2 9 9 O 1.21288 * 119.99843 * 359.97438 * 8 7 3 10 10 N 1.34769 * 120.00174 * 180.02562 * 8 7 3 11 11 C 1.46502 * 120.00245 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.64129 * 325.70040 * 11 10 8 13 13 C 1.55157 * 110.86875 * 88.94853 * 11 10 8 14 14 C 1.54909 * 101.57958 * 153.93745 * 13 11 10 15 15 N 1.47426 * 104.83381 * 322.98989 * 14 13 11 16 16 C 1.36939 * 125.64917 * 204.16150 * 15 14 13 17 17 H 1.08004 * 119.99851 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.00106 * 359.96353 * 16 15 14 19 19 N 1.31618 * 119.99789 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00098 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47403 * 59.99350 * 20 18 16 22 22 H 1.48502 * 109.47306 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47124 * 299.99690 * 20 18 16 24 24 C 1.47018 * 108.70104 * 24.12870 * 15 14 13 25 25 H 1.08998 * 109.88222 * 239.52595 * 24 15 14 26 26 C 1.53003 * 110.01041 * 118.43370 * 24 15 14 27 27 H 1.08004 * 119.99631 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.99923 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.99559 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47045 * 55.00236 * 5 3 2 31 31 H 1.09005 * 109.46787 * 174.99775 * 5 3 2 32 32 H 1.09007 * 109.46725 * 180.02562 * 6 5 3 33 33 H 1.08993 * 109.47518 * 299.99733 * 6 5 3 34 34 H 1.08996 * 109.47106 * 60.00635 * 6 5 3 35 35 H 1.08995 * 109.47109 * 304.99899 * 7 3 2 36 36 H 1.09003 * 109.46827 * 185.00126 * 7 3 2 37 37 H 0.97000 * 120.00112 * 359.97438 * 10 8 7 38 38 H 1.09000 * 111.00495 * 272.01128 * 13 11 10 39 39 H 1.08997 * 111.00429 * 35.86706 * 13 11 10 40 40 H 1.08998 * 110.36917 * 204.14700 * 14 13 11 41 41 H 1.09009 * 110.46209 * 81.87337 * 14 13 11 42 42 H 0.96996 * 119.99991 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47137 * 302.10607 * 26 24 15 44 44 H 1.08997 * 109.47286 * 62.11746 * 26 24 15 45 45 H 1.09002 * 109.47086 * 182.11335 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9431 1.3861 1.2493 6 6 2.0564 1.4307 2.4952 7 6 2.9432 1.3861 -1.2493 8 6 2.0699 1.4300 -2.4766 9 8 0.8627 1.3990 -2.3633 10 7 2.6303 1.5026 -3.7002 11 6 1.7813 1.5447 -4.8934 12 1 0.8839 0.9434 -4.7479 13 6 1.4096 3.0068 -5.2559 14 6 1.1570 2.8947 -6.7801 15 7 2.1625 1.9289 -7.2593 16 6 2.6449 1.8473 -8.5383 17 1 3.3842 1.1013 -8.7900 18 6 2.1835 2.7233 -9.5113 19 7 1.2820 3.6319 -9.2046 20 14 2.8419 2.6125 -11.2558 21 1 2.5444 1.2684 -11.8128 22 1 2.1937 3.6509 -12.0965 23 1 4.3110 2.8297 -11.2451 24 6 2.5622 1.0683 -6.1362 25 1 3.6336 1.1631 -5.9596 26 6 2.2126 -0.3892 -6.4433 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 3.5906 0.5105 1.2952 31 1 3.5541 2.2878 1.2056 32 1 2.6831 1.4889 3.3853 33 1 1.4091 2.3064 2.4493 34 1 1.4456 0.5291 2.5389 35 1 3.5906 0.5104 -1.2951 36 1 3.5541 2.2877 -1.2056 37 1 3.5957 1.5270 -3.7908 38 1 0.5069 3.3217 -4.7324 39 1 2.2375 3.6840 -5.0459 40 1 1.3011 3.8623 -7.2608 41 1 0.1509 2.5221 -6.9733 42 1 0.9599 4.2443 -9.8843 43 1 1.1432 -0.4735 -6.6364 44 1 2.7676 -0.7187 -7.3217 45 1 2.4781 -1.0140 -5.5905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656991491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:54 Heat of formation + Delta-G solvation = -9.449702 kcal Electronic energy + Delta-G solvation = -22454.931515 eV Core-core repulsion = 19279.999109 eV Total energy + Delta-G solvation = -3174.932406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.79380 -37.86052 -36.52991 -33.91971 -32.08282 -31.80281 -30.53906 -30.22978 -28.48023 -25.43984 -24.03719 -23.82600 -21.75853 -20.56134 -20.07651 -19.73177 -19.34503 -16.83183 -16.65069 -15.85040 -15.49162 -14.84201 -14.60265 -14.58916 -14.12725 -13.83655 -13.59149 -13.30359 -13.11584 -12.74824 -12.28660 -12.12534 -12.10299 -11.80219 -11.54588 -11.43230 -11.32095 -11.13335 -10.93066 -10.84535 -10.81526 -10.57329 -10.49999 -10.36889 -10.12016 -9.73488 -9.63734 -9.54158 -9.05199 -8.66066 -8.51524 -6.87137 -5.65123 -3.08056 2.46509 2.93785 3.39487 3.42428 3.45188 3.48070 4.48119 4.64386 4.68300 4.81605 5.10273 5.12744 5.27086 5.32324 5.37668 5.42045 5.43177 5.57761 5.61708 5.66309 5.73452 5.75763 5.80245 5.86594 5.97481 6.07338 6.14270 6.19421 6.27942 6.33253 6.39536 6.57674 6.64140 6.74132 6.75431 6.89761 6.95848 7.15694 7.53074 7.62421 7.83605 7.86309 8.35316 8.54869 9.20886 9.81884 10.46126 11.38129 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.041447 B = 0.003260 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.397323 B = 8588.126908 C = 8645.738645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.152 4.152 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.135 4.135 8 C 0.509 3.491 9 O -0.536 6.536 10 N -0.720 5.720 11 C 0.136 3.864 12 H 0.090 0.910 13 C -0.152 4.152 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.155 3.845 25 H 0.035 0.965 26 C -0.155 4.155 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.396 0.604 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.108 0.892 41 H 0.014 0.986 42 H 0.253 0.747 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -4.770 19.357 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.175 4.175 8 C 0.295 3.705 9 O -0.412 6.412 10 N -0.370 5.370 11 C 0.032 3.968 12 H 0.108 0.892 13 C -0.192 4.192 14 C 0.028 3.972 15 N -0.320 5.320 16 C -0.349 4.349 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.047 3.953 25 H 0.052 0.948 26 C -0.214 4.214 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.230 0.770 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.126 0.874 41 H 0.032 0.968 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.261 -4.673 19.207 20.034 hybrid contribution 0.782 -0.186 -1.129 1.386 sum 4.044 -4.860 18.077 19.151 Atomic orbital electron populations 1.23687 0.95946 1.01261 0.99093 1.22603 0.95976 0.97002 1.01422 1.20144 0.96564 0.97097 0.92442 0.90075 1.21542 0.97862 1.01869 0.94090 1.21757 0.99826 1.02160 0.97086 1.21722 0.98736 1.04093 0.92990 1.20574 0.89233 0.76187 0.84544 1.90697 1.14758 1.49176 1.86578 1.46115 1.10154 1.74810 1.05959 1.22087 0.93598 0.97979 0.83176 0.89160 1.23375 1.00447 0.95012 1.00343 1.21942 0.90761 0.97471 0.87045 1.44484 1.47069 1.35264 1.05230 1.18979 1.18305 1.13684 0.83950 0.90543 1.24789 0.99092 0.98426 0.98288 1.69789 1.33001 1.21864 1.32309 0.86160 0.78144 0.77133 0.84080 1.21238 1.21584 1.21191 1.20990 0.95882 0.90672 0.87771 0.94791 1.22233 1.01693 0.97474 1.00011 0.88619 0.89341 0.88240 0.91920 0.91861 0.93037 0.92803 0.92411 0.89126 0.88985 0.77023 0.92113 0.92121 0.87410 0.96835 0.93646 0.92988 0.92796 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 13.22 29.01 0.38 -1.55 16 2 C -0.15 -1.67 6.76 -36.03 -0.24 -1.91 16 3 C -0.04 -0.44 1.82 -91.77 -0.17 -0.61 16 4 H 0.08 0.96 7.60 -51.93 -0.39 0.56 16 5 C -0.12 -0.90 5.39 -26.73 -0.14 -1.05 16 6 C -0.15 -1.15 9.73 37.15 0.36 -0.79 16 7 C -0.14 -1.34 5.16 -27.88 -0.14 -1.48 16 8 C 0.51 7.26 7.58 -10.99 -0.08 7.18 16 9 O -0.54 -9.53 13.85 5.55 0.08 -9.46 16 10 N -0.72 -10.45 5.20 -52.03 -0.27 -10.72 16 11 C 0.14 2.50 2.79 -66.10 -0.18 2.32 16 12 H 0.09 1.81 7.33 -51.93 -0.38 1.43 16 13 C -0.15 -3.06 6.77 -24.58 -0.17 -3.23 16 14 C 0.15 3.76 5.89 -2.53 -0.01 3.75 16 15 N -0.60 -14.92 3.13 -162.57 -0.51 -15.43 16 16 C -0.22 -6.03 9.90 -15.06 -0.15 -6.18 16 17 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -26.77 10.09 55.49 0.56 -26.21 16 20 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.16 3.13 3.47 -66.95 -0.23 2.90 16 25 H 0.03 0.67 7.70 -51.93 -0.40 0.27 16 26 C -0.15 -2.91 9.14 37.16 0.34 -2.57 16 27 H 0.10 1.21 7.83 -52.48 -0.41 0.80 16 28 H 0.09 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.46 7.38 -51.93 -0.38 0.08 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 4.76 8.34 -40.82 -0.34 4.42 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.11 2.96 5.87 -51.93 -0.31 2.66 16 41 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -30.81 358.17 -8.38 -39.20 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -8.07 Total: 3.93 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -0.54 Total: -3.61 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.22 Total: -52.36 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.81 -8.38 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656991491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.749 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds