Wall clock time and date at job start Tue Mar 31 2020 01:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99934 * 2 1 4 4 H 1.09000 * 109.47692 * 359.97438 * 3 2 1 5 5 C 1.53005 * 109.46910 * 119.99899 * 3 2 1 6 6 C 1.52990 * 109.46856 * 294.99575 * 5 3 2 7 7 C 1.53007 * 109.46889 * 239.99754 * 3 2 1 8 8 C 1.50697 * 109.47214 * 65.00388 * 7 3 2 9 9 O 1.21288 * 119.99843 * 359.97438 * 8 7 3 10 10 N 1.34769 * 120.00174 * 180.02562 * 8 7 3 11 11 C 1.46502 * 120.00245 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.64129 * 325.70040 * 11 10 8 13 13 C 1.55157 * 110.86875 * 88.94853 * 11 10 8 14 14 C 1.54909 * 101.57958 * 153.93745 * 13 11 10 15 15 N 1.47426 * 104.83381 * 322.98989 * 14 13 11 16 16 C 1.36939 * 125.64917 * 204.16150 * 15 14 13 17 17 H 1.08004 * 119.99851 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.00106 * 359.96353 * 16 15 14 19 19 N 1.31618 * 119.99789 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00098 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47403 * 59.99350 * 20 18 16 22 22 H 1.48502 * 109.47306 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47124 * 299.99690 * 20 18 16 24 24 C 1.47018 * 108.70104 * 24.12870 * 15 14 13 25 25 H 1.08998 * 109.88222 * 239.52595 * 24 15 14 26 26 C 1.53003 * 110.01041 * 118.43370 * 24 15 14 27 27 H 1.08004 * 119.99631 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.99923 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.99559 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47045 * 55.00236 * 5 3 2 31 31 H 1.09005 * 109.46787 * 174.99775 * 5 3 2 32 32 H 1.09007 * 109.46725 * 180.02562 * 6 5 3 33 33 H 1.08993 * 109.47518 * 299.99733 * 6 5 3 34 34 H 1.08996 * 109.47106 * 60.00635 * 6 5 3 35 35 H 1.08995 * 109.47109 * 304.99899 * 7 3 2 36 36 H 1.09003 * 109.46827 * 185.00126 * 7 3 2 37 37 H 0.97000 * 120.00112 * 359.97438 * 10 8 7 38 38 H 1.09000 * 111.00495 * 272.01128 * 13 11 10 39 39 H 1.08997 * 111.00429 * 35.86706 * 13 11 10 40 40 H 1.08998 * 110.36917 * 204.14700 * 14 13 11 41 41 H 1.09009 * 110.46209 * 81.87337 * 14 13 11 42 42 H 0.96996 * 119.99991 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47137 * 302.10607 * 26 24 15 44 44 H 1.08997 * 109.47286 * 62.11746 * 26 24 15 45 45 H 1.09002 * 109.47086 * 182.11335 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9431 1.3861 1.2493 6 6 2.0564 1.4307 2.4952 7 6 2.9432 1.3861 -1.2493 8 6 2.0699 1.4300 -2.4766 9 8 0.8627 1.3990 -2.3633 10 7 2.6303 1.5026 -3.7002 11 6 1.7813 1.5447 -4.8934 12 1 0.8839 0.9434 -4.7479 13 6 1.4096 3.0068 -5.2559 14 6 1.1570 2.8947 -6.7801 15 7 2.1625 1.9289 -7.2593 16 6 2.6449 1.8473 -8.5383 17 1 3.3842 1.1013 -8.7900 18 6 2.1835 2.7233 -9.5113 19 7 1.2820 3.6319 -9.2046 20 14 2.8419 2.6125 -11.2558 21 1 2.5444 1.2684 -11.8128 22 1 2.1937 3.6509 -12.0965 23 1 4.3110 2.8297 -11.2451 24 6 2.5622 1.0683 -6.1362 25 1 3.6336 1.1631 -5.9596 26 6 2.2126 -0.3892 -6.4433 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 3.5906 0.5105 1.2952 31 1 3.5541 2.2878 1.2056 32 1 2.6831 1.4889 3.3853 33 1 1.4091 2.3064 2.4493 34 1 1.4456 0.5291 2.5389 35 1 3.5906 0.5104 -1.2951 36 1 3.5541 2.2877 -1.2056 37 1 3.5957 1.5270 -3.7908 38 1 0.5069 3.3217 -4.7324 39 1 2.2375 3.6840 -5.0459 40 1 1.3011 3.8623 -7.2608 41 1 0.1509 2.5221 -6.9733 42 1 0.9599 4.2443 -9.8843 43 1 1.1432 -0.4735 -6.6364 44 1 2.7676 -0.7187 -7.3217 45 1 2.4781 -1.0140 -5.5905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656991491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:54 Heat of formation + Delta-G solvation = -27.682855 kcal Electronic energy + Delta-G solvation = -22455.722164 eV Core-core repulsion = 19279.999109 eV Total energy + Delta-G solvation = -3175.723055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01981 -39.35573 -37.50743 -35.48733 -33.83215 -32.56285 -32.08620 -31.42385 -30.16308 -26.80143 -25.88597 -25.02182 -22.49940 -22.16522 -21.48905 -21.14775 -20.34530 -18.70652 -17.86868 -17.31866 -16.62846 -16.39339 -15.78553 -15.69399 -15.46956 -15.28353 -14.64442 -14.55027 -14.30262 -14.01767 -13.98313 -13.62141 -13.23480 -12.97591 -12.95089 -12.81150 -12.69796 -12.60295 -12.23988 -12.14125 -12.06427 -12.00907 -11.96072 -11.63123 -11.57147 -11.43054 -11.30854 -10.77118 -10.71402 -10.02975 -9.83883 -8.90084 -7.74602 -5.19897 1.48059 1.51083 1.57275 1.58822 1.83017 2.26129 2.53732 3.35641 3.58120 3.87794 3.88838 3.90924 3.97789 3.99057 4.23057 4.41320 4.46118 4.49931 4.50968 4.62870 4.64282 4.70259 4.72544 4.80708 4.89204 4.96847 5.05565 5.06712 5.11259 5.12180 5.16907 5.23038 5.38617 5.44360 5.49709 5.51217 5.59629 5.69863 5.79927 5.87807 6.10901 6.30476 6.72338 7.11086 7.43664 7.79223 8.43104 9.27222 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.041447 B = 0.003260 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.397323 B = 8588.126908 C = 8645.738645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.146 4.146 3 C -0.045 4.045 4 H 0.057 0.943 5 C -0.110 4.110 6 C -0.153 4.153 7 C -0.125 4.125 8 C 0.505 3.495 9 O -0.574 6.574 10 N -0.710 5.710 11 C 0.155 3.845 12 H 0.073 0.927 13 C -0.137 4.137 14 C 0.158 3.842 15 N -0.614 5.614 16 C -0.228 4.228 17 H 0.086 0.914 18 C -0.070 4.070 19 N -0.952 5.952 20 Si 0.979 3.021 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.151 3.849 25 H 0.053 0.947 26 C -0.146 4.146 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.413 0.587 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.076 0.924 41 H -0.019 1.019 42 H 0.246 0.754 43 H 0.032 0.968 44 H 0.047 0.953 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.939 -5.924 20.807 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.164 4.164 3 C -0.063 4.063 4 H 0.076 0.924 5 C -0.147 4.147 6 C -0.210 4.210 7 C -0.165 4.165 8 C 0.293 3.707 9 O -0.453 6.453 10 N -0.362 5.362 11 C 0.049 3.951 12 H 0.091 0.909 13 C -0.177 4.177 14 C 0.032 3.968 15 N -0.340 5.340 16 C -0.357 4.357 17 H 0.103 0.897 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.808 3.192 21 H -0.206 1.206 22 H -0.224 1.224 23 H -0.200 1.200 24 C 0.044 3.956 25 H 0.071 0.929 26 C -0.205 4.205 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.133 0.867 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.249 0.751 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.094 0.906 41 H -0.001 1.001 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.071 -5.856 20.695 22.348 hybrid contribution -0.098 0.148 -1.521 1.531 sum 5.973 -5.708 19.175 20.879 Atomic orbital electron populations 1.23687 0.96679 1.00772 1.01074 1.22866 0.95751 0.98146 0.99624 1.20161 0.96595 0.95670 0.93924 0.92423 1.21511 0.97511 1.03225 0.92449 1.21768 0.99930 1.01426 0.97873 1.21769 0.98148 1.06702 0.89877 1.21432 0.89264 0.74695 0.85317 1.90704 1.16859 1.50678 1.87073 1.45942 1.10597 1.74862 1.04841 1.21598 0.93460 0.95881 0.84203 0.90873 1.23168 1.00868 0.96785 0.96874 1.21654 0.89391 0.95797 0.89946 1.44731 1.46930 1.36386 1.05908 1.19372 1.17966 1.13290 0.85071 0.89661 1.25632 0.99836 0.98576 1.02161 1.70046 1.34486 1.22728 1.32955 0.85134 0.77851 0.76839 0.79395 1.20632 1.22373 1.19986 1.21206 0.96885 0.90672 0.86861 0.92947 1.22116 1.00311 0.96938 1.01138 0.90349 0.88845 0.86710 0.90424 0.90525 0.91702 0.93628 0.93183 0.86245 0.86337 0.75060 0.92031 0.91173 0.90559 1.00063 0.94458 0.94900 0.93416 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.38 13.22 67.77 0.90 -3.49 16 2 C -0.15 -2.96 6.76 25.64 0.17 -2.78 16 3 C -0.04 -0.79 1.82 -11.54 -0.02 -0.81 16 4 H 0.06 1.31 7.60 -2.39 -0.02 1.29 16 5 C -0.11 -1.34 5.39 30.59 0.16 -1.18 16 6 C -0.15 -2.03 9.73 71.98 0.70 -1.33 16 7 C -0.13 -1.99 5.16 29.85 0.15 -1.84 16 8 C 0.50 13.16 7.58 87.66 0.66 13.83 16 9 O -0.57 -19.98 13.85 -3.05 -0.04 -20.03 16 10 N -0.71 -18.62 5.20 -436.92 -2.27 -20.89 16 11 C 0.15 5.51 2.79 46.18 0.13 5.64 16 12 H 0.07 2.91 7.33 -2.39 -0.02 2.89 16 13 C -0.14 -5.52 6.77 31.99 0.22 -5.30 16 14 C 0.16 8.03 5.89 86.85 0.51 8.54 16 15 N -0.61 -30.95 3.13 -668.25 -2.09 -33.04 16 16 C -0.23 -12.45 9.90 84.03 0.83 -11.62 16 17 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 18 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 19 N -0.95 -57.13 10.09 21.65 0.22 -56.91 16 20 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 C 0.15 5.86 3.47 45.34 0.16 6.02 16 25 H 0.05 1.89 7.70 -2.39 -0.02 1.87 16 26 C -0.15 -5.25 9.14 71.98 0.66 -4.59 16 27 H 0.08 2.09 7.83 -2.91 -0.02 2.06 16 28 H 0.09 2.03 8.06 -2.91 -0.02 2.00 16 29 H 0.12 1.97 8.06 -2.91 -0.02 1.94 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.74 7.38 -2.39 -0.02 0.72 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.41 8.25 8.34 -92.71 -0.77 7.48 16 38 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.08 4.39 5.87 -2.39 -0.01 4.37 16 41 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 42 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.05 1.76 8.05 -2.39 -0.02 1.74 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -68.95 358.17 3.71 -65.25 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.17 Total: 20.62 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.70 Total: -2.39 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -4.14 Total: -110.84 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.04 Total: -20.03 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.95 3.71 -65.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656991491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.563 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds