Wall clock time and date at job start Tue Mar 31 2020 01:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46990 * 2 1 4 4 H 1.09007 * 109.46762 * 304.99228 * 3 2 1 5 5 C 1.52993 * 109.47588 * 64.99610 * 3 2 1 6 6 C 1.50706 * 109.47021 * 184.99693 * 3 2 1 7 7 O 1.21288 * 119.99755 * 359.97438 * 6 3 2 8 8 N 1.34773 * 120.00042 * 179.97438 * 6 3 2 9 9 C 1.46501 * 119.99829 * 179.97438 * 8 6 3 10 10 H 1.08993 * 115.55608 * 350.69143 * 9 8 6 11 11 C 1.53031 * 117.49745 * 136.42462 * 9 8 6 12 12 C 1.52819 * 117.50253 * 205.00511 * 9 8 6 13 13 C 1.53184 * 117.71655 * 144.90319 * 12 9 8 14 14 C 1.53343 * 108.77016 * 158.89020 * 13 12 9 15 15 N 1.46842 * 108.81865 * 51.30643 * 14 13 12 16 16 C 1.36934 * 120.38064 * 123.12043 * 15 14 13 17 17 H 1.08002 * 120.00336 * 331.80388 * 16 15 14 18 18 C 1.38816 * 119.99797 * 151.80179 * 16 15 14 19 19 N 1.31625 * 120.00012 * 159.30142 * 18 16 15 20 20 Si 1.86798 * 119.99921 * 339.29824 * 18 16 15 21 21 H 1.48504 * 109.46854 * 94.24976 * 20 18 16 22 22 H 1.48500 * 109.47002 * 214.24821 * 20 18 16 23 23 H 1.48500 * 109.47213 * 334.24788 * 20 18 16 24 24 C 1.46846 * 119.23356 * 303.10132 * 15 14 13 25 25 C 1.53191 * 117.71101 * 0.14363 * 12 9 8 26 26 H 1.08998 * 109.47481 * 300.00267 * 1 2 3 27 27 H 1.08997 * 109.47193 * 60.00374 * 1 2 3 28 28 H 1.09008 * 109.47290 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47619 * 239.99223 * 2 1 3 30 30 H 1.09008 * 109.46963 * 119.99163 * 2 1 3 31 31 H 1.08998 * 109.47359 * 60.00148 * 5 3 2 32 32 H 1.09003 * 109.47288 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.47309 * 299.99958 * 5 3 2 34 34 H 0.96997 * 120.00285 * 0.02562 * 8 6 3 35 35 H 1.09003 * 117.49957 * 214.95788 * 11 9 8 36 36 H 1.08996 * 117.50606 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.58562 * 278.67829 * 13 12 9 38 38 H 1.09003 * 109.58388 * 39.10341 * 13 12 9 39 39 H 1.09000 * 109.58103 * 291.50189 * 14 13 12 40 40 H 1.08998 * 109.57938 * 171.10778 * 14 13 12 41 41 H 0.96999 * 120.00135 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.57572 * 297.10145 * 24 15 14 43 43 H 1.08996 * 109.57885 * 176.70332 * 24 15 14 44 44 H 1.08993 * 109.59180 * 320.90129 * 25 12 9 45 45 H 1.08998 * 109.58766 * 81.33634 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8420 5 6 1.6351 2.1267 1.3072 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3951 -0.2036 8 7 4.2148 2.6118 -0.1457 9 6 5.6749 2.6135 -0.2655 10 1 6.1554 1.6396 -0.1730 11 6 6.3038 3.6239 -1.2275 12 6 6.4265 3.8260 0.2825 13 6 7.7969 3.5849 0.9232 14 6 8.5836 4.9012 0.9156 15 7 7.7466 5.9566 1.5003 16 6 8.1880 6.6711 2.5818 17 1 8.8782 6.2218 3.2807 18 6 7.7486 7.9728 2.7800 19 7 7.8221 8.5174 3.9761 20 14 7.0529 8.9517 1.3492 21 1 5.5743 8.8154 1.3287 22 1 7.4159 10.3831 1.5059 23 1 7.6154 8.4349 0.0758 24 6 6.4310 6.2373 0.9114 25 6 5.6005 4.9481 0.9191 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 1.8933 -0.5137 0.8901 31 1 2.0697 1.5877 2.1491 32 1 1.9981 3.1545 1.3070 33 1 0.5488 2.1254 1.3968 34 1 3.7325 3.4509 -0.0815 35 1 7.1982 3.3146 -1.7683 36 1 5.6312 4.2875 -1.7709 37 1 7.6652 3.2438 1.9500 38 1 8.3396 2.8315 0.3524 39 1 8.8425 5.1661 -0.1095 40 1 9.4926 4.7868 1.5060 41 1 7.5147 9.4268 4.1146 42 1 6.5565 6.5850 -0.1140 43 1 5.9235 7.0023 1.4990 44 1 4.6860 5.0992 0.3457 45 1 5.3507 4.6806 1.9458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661053991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:33 Heat of formation + Delta-G solvation = -6.141295 kcal Electronic energy + Delta-G solvation = -22685.577732 eV Core-core repulsion = 19510.788789 eV Total energy + Delta-G solvation = -3174.788943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.25269 -38.76936 -35.92364 -35.43616 -33.21728 -31.70587 -30.56875 -29.88400 -28.59093 -25.59907 -24.19762 -23.14700 -22.80465 -21.52697 -20.66497 -19.90166 -18.44164 -17.29704 -16.65842 -16.11552 -15.64171 -15.28750 -14.70413 -14.35399 -14.16886 -14.01754 -13.79366 -13.68203 -13.07718 -12.85530 -12.79505 -12.44711 -12.37241 -12.06475 -11.96687 -11.93126 -11.81147 -11.71754 -11.17372 -11.06890 -10.92518 -10.79928 -10.60315 -10.36678 -10.00975 -9.84834 -9.77546 -9.49823 -9.45750 -8.74627 -8.45391 -6.95402 -5.96341 -3.31965 2.54413 3.05414 3.28371 3.46416 3.49654 4.03925 4.44990 4.51015 4.53995 4.68020 4.81590 4.93513 4.97755 5.05142 5.10951 5.14509 5.22891 5.29840 5.33167 5.41146 5.55095 5.62627 5.72691 5.74613 5.81663 5.85197 5.91219 5.98636 6.02730 6.04488 6.11036 6.14981 6.30890 6.35669 6.41540 6.51998 6.60103 6.67993 6.70143 6.94889 7.46521 7.97085 8.18195 8.32670 8.94528 9.71383 10.09743 11.19759 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024603 B = 0.004028 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.793063 B = 6950.393612 C = 7489.686140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.111 4.111 4 H 0.096 0.904 5 C -0.147 4.147 6 C 0.519 3.481 7 O -0.544 6.544 8 N -0.697 5.697 9 C 0.075 3.925 10 H 0.133 0.867 11 C -0.185 4.185 12 C -0.102 4.102 13 C -0.098 4.098 14 C 0.153 3.847 15 N -0.604 5.604 16 C -0.260 4.260 17 H 0.085 0.915 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.882 3.118 21 H -0.290 1.290 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.132 3.868 25 C -0.097 4.097 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.401 0.599 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.024 0.976 40 H 0.065 0.935 41 H 0.262 0.738 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.525 -12.811 -9.801 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.132 4.132 4 H 0.114 0.886 5 C -0.205 4.205 6 C 0.305 3.695 7 O -0.421 6.421 8 N -0.346 5.346 9 C -0.031 4.031 10 H 0.150 0.850 11 C -0.224 4.224 12 C -0.104 4.104 13 C -0.138 4.138 14 C 0.026 3.974 15 N -0.327 5.327 16 C -0.388 4.388 17 H 0.103 0.897 18 C -0.176 4.176 19 N -0.551 5.551 20 Si 0.713 3.287 21 H -0.218 1.218 22 H -0.232 1.232 23 H -0.195 1.195 24 C 0.006 3.994 25 C -0.137 4.137 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.236 0.764 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.096 -13.420 -9.738 20.524 hybrid contribution -0.671 1.211 -0.794 1.596 sum -12.767 -12.209 -10.532 20.566 Atomic orbital electron populations 1.21847 0.95517 1.01857 1.01888 1.21334 0.95273 0.94164 1.03506 1.21363 0.91745 0.99480 1.00634 0.88636 1.21847 1.02337 1.00463 0.95847 1.20686 0.89906 0.83478 0.75385 1.90677 1.70350 1.31430 1.49604 1.45454 1.06590 1.08775 1.73798 1.21840 0.79929 0.96522 1.04834 0.84979 1.23558 1.02867 1.02540 0.93387 1.21919 0.97654 0.96244 0.94561 1.21675 0.92804 0.99111 1.00188 1.20880 0.93143 0.86953 0.96378 1.44275 1.13213 1.40205 1.35036 1.18948 1.26958 0.93769 0.99148 0.89749 1.25307 0.99250 0.96646 0.96413 1.69844 1.49734 1.15377 1.20183 0.86937 0.77860 0.79173 0.84730 1.21767 1.23181 1.19503 1.21271 0.86758 0.94699 0.96626 1.21624 0.96266 0.95687 1.00116 0.92362 0.92759 0.92499 0.91195 0.91260 0.91845 0.92003 0.91135 0.76354 0.88294 0.88988 0.91372 0.92431 0.95819 0.91694 0.92791 0.95637 0.91025 0.93406 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.15 0.36 -0.70 16 2 C -0.10 -0.96 4.75 -26.73 -0.13 -1.09 16 3 C -0.11 -1.02 2.72 -91.77 -0.25 -1.27 16 4 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 5 C -0.15 -1.20 8.84 37.15 0.33 -0.87 16 6 C 0.52 6.62 7.15 -10.98 -0.08 6.54 16 7 O -0.54 -8.94 15.49 5.55 0.09 -8.85 16 8 N -0.70 -8.48 5.24 -53.88 -0.28 -8.77 16 9 C 0.07 1.02 6.14 -68.01 -0.42 0.61 16 10 H 0.13 1.96 7.40 -51.93 -0.38 1.58 16 11 C -0.18 -2.45 9.86 -26.80 -0.26 -2.71 16 12 C -0.10 -1.56 1.94 -154.49 -0.30 -1.86 16 13 C -0.10 -1.60 5.83 -26.46 -0.15 -1.75 16 14 C 0.15 2.95 6.51 -3.68 -0.02 2.92 16 15 N -0.60 -14.09 2.71 -172.27 -0.47 -14.56 16 16 C -0.26 -7.19 10.00 -15.06 -0.15 -7.34 16 17 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 18 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 19 N -0.91 -27.67 13.97 55.49 0.78 -26.90 16 20 Si 0.88 22.09 24.40 -169.99 -4.15 17.94 16 21 H -0.29 -6.94 6.66 56.52 0.38 -6.56 16 22 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 23 H -0.27 -6.65 6.65 56.52 0.38 -6.27 16 24 C 0.13 2.79 4.23 -3.67 -0.02 2.78 16 25 C -0.10 -1.64 5.37 -26.45 -0.14 -1.78 16 26 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16 30 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.49 7.57 -51.93 -0.39 0.10 16 33 H 0.07 0.46 6.57 -51.93 -0.34 0.12 16 34 H 0.40 4.18 6.54 -40.82 -0.27 3.91 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.25 7.92 -51.93 -0.41 0.84 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.03 0.54 7.27 -51.93 -0.38 0.16 16 43 H 0.07 1.67 4.31 -51.93 -0.22 1.44 16 44 H 0.05 0.67 6.75 -51.93 -0.35 0.32 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 345.20 15.07 5.20 5.20 Total: -1.00 -31.92 345.20 -7.92 -39.83 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.76 Total: 2.06 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.33 Total: -5.97 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.03 Total: -50.22 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.15 Total: 17.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.92 -7.92 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661053991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.694 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds