Wall clock time and date at job start Tue Mar 31 2020 01:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46990 * 2 1 4 4 H 1.09007 * 109.46762 * 304.99228 * 3 2 1 5 5 C 1.52993 * 109.47588 * 64.99610 * 3 2 1 6 6 C 1.50706 * 109.47021 * 184.99693 * 3 2 1 7 7 O 1.21288 * 119.99755 * 359.97438 * 6 3 2 8 8 N 1.34773 * 120.00042 * 179.97438 * 6 3 2 9 9 C 1.46501 * 119.99829 * 179.97438 * 8 6 3 10 10 H 1.08993 * 115.55608 * 350.69143 * 9 8 6 11 11 C 1.53031 * 117.49745 * 136.42462 * 9 8 6 12 12 C 1.52819 * 117.50253 * 205.00511 * 9 8 6 13 13 C 1.53184 * 117.71655 * 144.90319 * 12 9 8 14 14 C 1.53343 * 108.77016 * 158.89020 * 13 12 9 15 15 N 1.46842 * 108.81865 * 51.30643 * 14 13 12 16 16 C 1.36934 * 120.38064 * 123.12043 * 15 14 13 17 17 H 1.08002 * 120.00336 * 331.80388 * 16 15 14 18 18 C 1.38816 * 119.99797 * 151.80179 * 16 15 14 19 19 N 1.31625 * 120.00012 * 159.30142 * 18 16 15 20 20 Si 1.86798 * 119.99921 * 339.29824 * 18 16 15 21 21 H 1.48504 * 109.46854 * 94.24976 * 20 18 16 22 22 H 1.48500 * 109.47002 * 214.24821 * 20 18 16 23 23 H 1.48500 * 109.47213 * 334.24788 * 20 18 16 24 24 C 1.46846 * 119.23356 * 303.10132 * 15 14 13 25 25 C 1.53191 * 117.71101 * 0.14363 * 12 9 8 26 26 H 1.08998 * 109.47481 * 300.00267 * 1 2 3 27 27 H 1.08997 * 109.47193 * 60.00374 * 1 2 3 28 28 H 1.09008 * 109.47290 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47619 * 239.99223 * 2 1 3 30 30 H 1.09008 * 109.46963 * 119.99163 * 2 1 3 31 31 H 1.08998 * 109.47359 * 60.00148 * 5 3 2 32 32 H 1.09003 * 109.47288 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.47309 * 299.99958 * 5 3 2 34 34 H 0.96997 * 120.00285 * 0.02562 * 8 6 3 35 35 H 1.09003 * 117.49957 * 214.95788 * 11 9 8 36 36 H 1.08996 * 117.50606 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.58562 * 278.67829 * 13 12 9 38 38 H 1.09003 * 109.58388 * 39.10341 * 13 12 9 39 39 H 1.09000 * 109.58103 * 291.50189 * 14 13 12 40 40 H 1.08998 * 109.57938 * 171.10778 * 14 13 12 41 41 H 0.96999 * 120.00135 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.57572 * 297.10145 * 24 15 14 43 43 H 1.08996 * 109.57885 * 176.70332 * 24 15 14 44 44 H 1.08993 * 109.59180 * 320.90129 * 25 12 9 45 45 H 1.08998 * 109.58766 * 81.33634 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8420 5 6 1.6351 2.1267 1.3072 6 6 3.5419 1.4443 -0.1238 7 8 4.1450 0.3951 -0.2036 8 7 4.2148 2.6118 -0.1457 9 6 5.6749 2.6135 -0.2655 10 1 6.1554 1.6396 -0.1730 11 6 6.3038 3.6239 -1.2275 12 6 6.4265 3.8260 0.2825 13 6 7.7969 3.5849 0.9232 14 6 8.5836 4.9012 0.9156 15 7 7.7466 5.9566 1.5003 16 6 8.1880 6.6711 2.5818 17 1 8.8782 6.2218 3.2807 18 6 7.7486 7.9728 2.7800 19 7 7.8221 8.5174 3.9761 20 14 7.0529 8.9517 1.3492 21 1 5.5743 8.8154 1.3287 22 1 7.4159 10.3831 1.5059 23 1 7.6154 8.4349 0.0758 24 6 6.4310 6.2373 0.9114 25 6 5.6005 4.9481 0.9191 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 1.8933 -0.5137 0.8901 31 1 2.0697 1.5877 2.1491 32 1 1.9981 3.1545 1.3070 33 1 0.5488 2.1254 1.3968 34 1 3.7325 3.4509 -0.0815 35 1 7.1982 3.3146 -1.7683 36 1 5.6312 4.2875 -1.7709 37 1 7.6652 3.2438 1.9500 38 1 8.3396 2.8315 0.3524 39 1 8.8425 5.1661 -0.1095 40 1 9.4926 4.7868 1.5060 41 1 7.5147 9.4268 4.1146 42 1 6.5565 6.5850 -0.1140 43 1 5.9235 7.0023 1.4990 44 1 4.6860 5.0992 0.3457 45 1 5.3507 4.6806 1.9458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661053991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:32 Heat of formation + Delta-G solvation = -26.611697 kcal Electronic energy + Delta-G solvation = -22686.465395 eV Core-core repulsion = 19510.788789 eV Total energy + Delta-G solvation = -3175.676606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31196 -40.00056 -37.37755 -36.32654 -34.56547 -33.51701 -32.06171 -30.74834 -29.98559 -26.32534 -26.01751 -24.58104 -23.76824 -22.97442 -21.83290 -20.79233 -19.92420 -18.57532 -18.08306 -17.37107 -17.07313 -16.45240 -15.94899 -15.61926 -15.44036 -15.34259 -15.19035 -14.44450 -14.42639 -14.34782 -14.23437 -13.70394 -13.56970 -13.46307 -13.05641 -12.92750 -12.68928 -12.56673 -12.51793 -12.35102 -12.26584 -12.10601 -11.72311 -11.61272 -11.59378 -11.49876 -11.29833 -10.92128 -10.72619 -10.58687 -9.67569 -8.85662 -8.15760 -5.47543 1.29738 1.42984 1.52539 1.56150 2.10184 2.42611 2.90882 3.07665 3.36277 3.63716 3.72462 3.80776 3.85106 3.91541 3.98773 4.03108 4.36922 4.38013 4.50042 4.52340 4.59475 4.62585 4.68970 4.72885 4.80487 4.85568 4.91975 4.94423 4.96764 4.98398 5.03695 5.12215 5.12682 5.20998 5.22045 5.30428 5.36914 5.48450 5.50771 5.54859 5.88895 6.14061 6.52112 6.94856 7.22389 7.64970 8.04964 9.04474 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024603 B = 0.004028 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.793063 B = 6950.393612 C = 7489.686140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.104 4.104 4 H 0.122 0.878 5 C -0.146 4.146 6 C 0.514 3.486 7 O -0.586 6.586 8 N -0.690 5.690 9 C 0.082 3.918 10 H 0.121 0.879 11 C -0.164 4.164 12 C -0.121 4.121 13 C -0.090 4.090 14 C 0.148 3.852 15 N -0.619 5.619 16 C -0.251 4.251 17 H 0.046 0.954 18 C -0.038 4.038 19 N -0.959 5.959 20 Si 0.951 3.049 21 H -0.271 1.271 22 H -0.313 1.313 23 H -0.259 1.259 24 C 0.126 3.874 25 C -0.087 4.087 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.412 0.588 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.261 0.739 42 H 0.038 0.962 43 H 0.048 0.952 44 H 0.084 0.916 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.759 -13.136 -12.659 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.125 4.125 4 H 0.139 0.861 5 C -0.203 4.203 6 C 0.303 3.697 7 O -0.466 6.466 8 N -0.340 5.340 9 C -0.024 4.024 10 H 0.138 0.862 11 C -0.202 4.202 12 C -0.122 4.122 13 C -0.129 4.129 14 C 0.024 3.976 15 N -0.344 5.344 16 C -0.380 4.380 17 H 0.064 0.936 18 C -0.232 4.232 19 N -0.606 5.606 20 Si 0.780 3.220 21 H -0.197 1.197 22 H -0.243 1.243 23 H -0.183 1.183 24 C 0.001 3.999 25 C -0.126 4.126 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.249 0.751 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.354 -13.766 -12.632 23.561 hybrid contribution 0.091 1.200 0.143 1.212 sum -14.263 -12.567 -12.489 22.745 Atomic orbital electron populations 1.21815 0.93437 1.02454 1.02864 1.21316 0.97002 0.93969 1.01977 1.21408 0.89001 0.99871 1.02180 0.86051 1.21862 1.03657 1.00268 0.94517 1.21373 0.91362 0.82811 0.74166 1.90662 1.71474 1.32900 1.51517 1.45421 1.05992 1.09286 1.73304 1.21667 0.80724 0.95478 1.04562 0.86155 1.23657 1.03338 1.01476 0.91760 1.21776 0.97070 0.96914 0.96480 1.21523 0.93709 0.97791 0.99845 1.21029 0.92817 0.87318 0.96483 1.44411 1.14934 1.40572 1.34436 1.18872 1.25492 0.94079 0.99587 0.93586 1.25967 1.00861 0.97713 0.98662 1.69985 1.52484 1.15706 1.22389 0.85827 0.78259 0.76571 0.81382 1.19721 1.24259 1.18342 1.21338 0.85920 0.96345 0.96247 1.21450 0.97184 0.93947 1.00050 0.91480 0.91584 0.92226 0.92624 0.93025 0.93412 0.91440 0.89021 0.75064 0.86988 0.87430 0.93378 0.89665 0.94212 0.92920 0.92979 0.94371 0.93380 0.89807 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.67 71.98 0.70 -0.97 16 2 C -0.10 -1.76 4.75 30.59 0.15 -1.62 16 3 C -0.10 -1.64 2.72 -11.54 -0.03 -1.67 16 4 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 5 C -0.15 -1.99 8.84 71.98 0.64 -1.35 16 6 C 0.51 12.17 7.15 87.66 0.63 12.80 16 7 O -0.59 -18.85 15.49 -3.05 -0.05 -18.90 16 8 N -0.69 -14.84 5.24 -442.77 -2.32 -17.16 16 9 C 0.08 2.03 6.14 44.94 0.28 2.31 16 10 H 0.12 3.35 7.40 -2.39 -0.02 3.34 16 11 C -0.16 -3.64 9.86 30.55 0.30 -3.34 16 12 C -0.12 -3.36 1.94 -52.17 -0.10 -3.46 16 13 C -0.09 -2.78 5.83 30.77 0.18 -2.60 16 14 C 0.15 5.60 6.51 86.43 0.56 6.17 16 15 N -0.62 -28.65 2.71 -698.92 -1.89 -30.55 16 16 C -0.25 -14.25 10.00 84.03 0.84 -13.41 16 17 H 0.05 2.90 8.06 -2.91 -0.02 2.87 16 18 C -0.04 -2.19 5.23 84.86 0.44 -1.75 16 19 N -0.96 -60.47 13.97 21.65 0.30 -60.16 16 20 Si 0.95 45.80 24.40 68.60 1.67 47.47 16 21 H -0.27 -12.07 6.66 99.48 0.66 -11.41 16 22 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 23 H -0.26 -11.86 6.65 99.48 0.66 -11.20 16 24 C 0.13 5.07 4.23 86.43 0.37 5.44 16 25 C -0.09 -2.71 5.37 30.78 0.17 -2.55 16 26 H 0.07 0.64 6.57 -2.39 -0.02 0.62 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.05 1.09 7.95 -2.39 -0.02 1.07 16 30 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.85 7.57 -2.39 -0.02 0.83 16 33 H 0.09 0.89 6.57 -2.39 -0.02 0.87 16 34 H 0.41 7.00 6.54 -92.71 -0.61 6.39 16 35 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 2.07 7.92 -2.39 -0.02 2.05 16 41 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.04 1.45 7.27 -2.39 -0.02 1.44 16 43 H 0.05 2.15 4.31 -2.39 -0.01 2.14 16 44 H 0.08 1.98 6.75 -2.39 -0.02 1.97 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -71.73 345.20 3.09 -68.63 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.27 Total: 16.68 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 5.11 Total: -6.02 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -3.91 Total: -107.87 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.05 Total: -18.90 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.67 Total: 47.47 kcal Total: -71.73 3.09 -68.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661053991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.021 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds