Wall clock time and date at job start Tue Mar 31 2020 01:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46917 * 2 1 4 4 H 1.09004 * 109.47619 * 54.99889 * 3 2 1 5 5 C 1.53005 * 109.47129 * 294.99253 * 3 2 1 6 6 C 1.50706 * 109.46849 * 174.99644 * 3 2 1 7 7 O 1.21275 * 120.00058 * 359.97438 * 6 3 2 8 8 N 1.34774 * 119.99598 * 179.97438 * 6 3 2 9 9 C 1.46505 * 119.99650 * 179.97438 * 8 6 3 10 10 H 1.08997 * 115.55200 * 350.58473 * 9 8 6 11 11 C 1.53030 * 117.50189 * 136.27154 * 9 8 6 12 12 C 1.52825 * 117.50028 * 204.89686 * 9 8 6 13 13 C 1.53183 * 117.71096 * 144.90122 * 12 9 8 14 14 C 1.53349 * 108.77000 * 158.89086 * 13 12 9 15 15 N 1.46834 * 108.81690 * 51.30590 * 14 13 12 16 16 C 1.36942 * 120.38497 * 123.11881 * 15 14 13 17 17 H 1.07994 * 119.99728 * 208.88224 * 16 15 14 18 18 C 1.38807 * 119.99533 * 28.89163 * 16 15 14 19 19 N 1.31622 * 120.00467 * 17.84736 * 18 16 15 20 20 Si 1.86808 * 119.99754 * 197.85138 * 18 16 15 21 21 H 1.48498 * 109.47232 * 89.99654 * 20 18 16 22 22 H 1.48500 * 109.46806 * 209.99868 * 20 18 16 23 23 H 1.48500 * 109.46779 * 329.99640 * 20 18 16 24 24 C 1.46851 * 119.23208 * 303.10047 * 15 14 13 25 25 C 1.53180 * 117.71478 * 0.14005 * 12 9 8 26 26 H 1.09001 * 109.46659 * 60.00703 * 1 2 3 27 27 H 1.09000 * 109.47757 * 300.00243 * 1 2 3 28 28 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46659 * 119.99297 * 2 1 3 30 30 H 1.09001 * 109.47315 * 239.99463 * 2 1 3 31 31 H 1.09000 * 109.46891 * 180.02562 * 5 3 2 32 32 H 1.08994 * 109.46893 * 300.00799 * 5 3 2 33 33 H 1.09003 * 109.46831 * 60.00586 * 5 3 2 34 34 H 0.96997 * 120.00343 * 0.02562 * 8 6 3 35 35 H 1.08996 * 117.50569 * 214.95197 * 11 9 8 36 36 H 1.09007 * 117.50078 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.58762 * 278.67956 * 13 12 9 38 38 H 1.08997 * 109.59003 * 39.10189 * 13 12 9 39 39 H 1.09000 * 109.57552 * 291.50426 * 14 13 12 40 40 H 1.08999 * 109.58091 * 171.10742 * 14 13 12 41 41 H 0.96995 * 119.99962 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.58189 * 297.10607 * 24 15 14 43 43 H 1.09004 * 109.57685 * 176.70196 * 24 15 14 44 44 H 1.08996 * 109.58785 * 320.90303 * 25 12 9 45 45 H 1.09010 * 109.58482 * 81.33005 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3075 6 6 3.5419 1.4443 0.1239 7 8 4.1449 0.3952 0.2048 8 7 4.2149 2.6118 0.1449 9 6 5.6749 2.6135 0.2659 10 1 6.1289 1.6492 0.4939 11 6 6.4579 3.5669 -0.6395 12 6 6.3326 3.8604 0.8561 13 6 7.5783 3.6647 1.7258 14 6 8.3621 4.9821 1.7686 15 7 7.4460 6.0663 2.1441 16 6 7.7078 6.8463 3.2389 17 1 6.8940 7.2946 3.7895 18 6 9.0190 7.0609 3.6405 19 7 10.0096 6.8282 2.8056 20 14 9.3779 7.6799 5.3661 21 1 9.5487 6.5231 6.2814 22 1 10.6231 8.4888 5.3528 23 1 8.2469 8.5199 5.8358 24 6 6.2459 6.3049 1.3320 25 6 5.4191 5.0144 1.2806 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.9990 3.1540 -1.3076 32 1 2.0699 1.5873 -2.1491 33 1 0.5490 2.1252 -1.3971 34 1 3.7325 3.4509 0.0806 35 1 7.4272 3.2300 -1.0068 36 1 5.8866 4.1931 -1.3249 37 1 7.2786 3.3849 2.7358 38 1 8.2035 2.8812 1.2977 39 1 8.7866 5.1865 0.7856 40 1 9.1617 4.9077 2.5056 41 1 10.9259 6.9778 3.0864 42 1 6.5393 6.5912 0.3221 43 1 5.6528 7.1011 1.7819 44 1 4.6116 5.1264 0.5572 45 1 5.0030 4.8074 2.2667 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661053993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:38 Heat of formation + Delta-G solvation = -12.210058 kcal Electronic energy + Delta-G solvation = -22489.951757 eV Core-core repulsion = 19314.899652 eV Total energy + Delta-G solvation = -3175.052104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.16334 -38.57486 -35.73232 -35.32644 -33.12201 -31.61020 -30.13668 -29.71264 -28.22588 -25.58883 -24.34874 -22.86600 -22.45491 -21.34854 -20.54972 -19.83444 -18.21137 -17.26382 -16.49087 -16.09312 -15.59901 -14.92263 -14.66106 -14.22676 -14.10927 -13.69683 -13.52964 -13.42627 -13.15225 -12.91593 -12.69591 -12.41207 -12.21353 -11.97840 -11.81352 -11.63051 -11.57168 -11.31317 -11.06197 -10.95154 -10.91407 -10.74586 -10.43159 -10.31519 -9.96225 -9.82874 -9.67094 -9.58969 -9.32430 -8.45142 -8.42831 -6.64617 -5.78989 -3.22517 2.60665 3.12316 3.37845 3.44995 3.45790 4.19099 4.47182 4.49519 4.56425 4.68633 5.00076 5.05747 5.11822 5.14937 5.15291 5.23135 5.31806 5.39039 5.49517 5.54861 5.61994 5.64097 5.69672 5.81391 5.89853 6.00231 6.06999 6.07416 6.12505 6.12730 6.29054 6.43968 6.59977 6.62572 6.64970 6.70196 6.83943 6.96055 7.36982 7.53841 7.67356 7.79517 8.24763 8.46392 9.21661 9.85191 10.41763 11.28668 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033034 B = 0.003370 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.403925 B = 8305.890077 C = 8475.117499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.112 4.112 4 H 0.097 0.903 5 C -0.145 4.145 6 C 0.517 3.483 7 O -0.544 6.544 8 N -0.695 5.695 9 C 0.068 3.932 10 H 0.131 0.869 11 C -0.183 4.183 12 C -0.097 4.097 13 C -0.106 4.106 14 C 0.173 3.827 15 N -0.590 5.590 16 C -0.254 4.254 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.150 3.850 25 C -0.097 4.097 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.400 0.600 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.018 0.982 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.130 -9.106 -7.694 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.133 4.133 4 H 0.115 0.885 5 C -0.203 4.203 6 C 0.304 3.696 7 O -0.421 6.421 8 N -0.345 5.345 9 C -0.037 4.037 10 H 0.148 0.852 11 C -0.221 4.221 12 C -0.098 4.098 13 C -0.145 4.145 14 C 0.047 3.953 15 N -0.312 5.312 16 C -0.384 4.384 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.023 3.977 25 C -0.136 4.136 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.235 0.765 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.036 0.964 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.524 -9.816 -7.607 19.880 hybrid contribution 0.092 0.789 0.758 1.098 sum -15.433 -9.027 -6.848 19.145 Atomic orbital electron populations 1.21849 0.95546 1.01844 1.01856 1.21333 0.95232 0.94201 1.03522 1.21366 0.91926 0.99459 1.00562 0.88506 1.21831 1.02283 1.00264 0.95912 1.20661 0.89827 0.83563 0.75557 1.90676 1.70344 1.31466 1.49607 1.45450 1.06717 1.08604 1.73703 1.21905 0.79346 0.97016 1.05471 0.85175 1.23532 1.01647 1.02845 0.94107 1.21964 0.98670 0.94924 0.94287 1.21877 0.94085 1.00644 0.97895 1.20762 0.92043 0.83265 0.99202 1.43978 1.23329 1.34091 1.29774 1.19197 0.91237 1.25430 1.02505 0.91778 1.25051 0.96327 0.99900 0.98317 1.70035 0.98723 1.52508 1.33259 0.86306 0.77468 0.78344 0.84749 1.21420 1.21781 1.20438 1.20836 0.89146 0.93218 0.94477 1.21624 0.96150 0.96030 0.99832 0.92469 0.92678 0.92516 0.91101 0.91355 0.92174 0.92036 0.91171 0.76478 0.88397 0.89132 0.92153 0.93036 0.96369 0.89182 0.93614 0.96328 0.92758 0.93679 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.70 16 2 C -0.10 -0.97 4.75 -26.73 -0.13 -1.10 16 3 C -0.11 -1.03 2.72 -91.77 -0.25 -1.28 16 4 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.15 -1.07 8.84 37.16 0.33 -0.74 16 6 C 0.52 6.80 7.15 -10.98 -0.08 6.73 16 7 O -0.54 -9.28 15.49 5.56 0.09 -9.19 16 8 N -0.70 -8.76 5.24 -53.88 -0.28 -9.04 16 9 C 0.07 1.01 6.13 -68.00 -0.42 0.60 16 10 H 0.13 2.13 7.40 -51.93 -0.38 1.75 16 11 C -0.18 -2.68 9.87 -26.75 -0.26 -2.94 16 12 C -0.10 -1.61 1.94 -154.45 -0.30 -1.91 16 13 C -0.11 -2.03 5.83 -26.46 -0.15 -2.18 16 14 C 0.17 4.09 5.40 -3.68 -0.02 4.07 16 15 N -0.59 -14.56 2.94 -172.26 -0.51 -15.06 16 16 C -0.25 -6.91 9.54 -15.06 -0.14 -7.05 16 17 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 18 C 0.00 0.08 4.89 -17.43 -0.09 -0.01 16 19 N -0.90 -26.03 11.23 55.49 0.62 -25.40 16 20 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.15 3.05 6.52 -3.67 -0.02 3.03 16 25 C -0.10 -1.60 5.37 -26.46 -0.14 -1.74 16 26 H 0.06 0.34 6.57 -51.93 -0.34 0.00 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.76 7.95 -51.93 -0.41 0.34 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.40 7.56 -51.93 -0.39 0.01 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.41 6.57 -51.93 -0.34 0.07 16 34 H 0.40 4.20 6.53 -40.82 -0.27 3.93 16 35 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 2.40 5.93 -51.93 -0.31 2.09 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 1.08 7.92 -51.93 -0.41 0.67 16 44 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 45 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -30.93 351.48 -8.96 -39.88 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.83 Total: 2.18 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.32 Total: -5.23 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.17 Total: -49.51 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.93 -8.96 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661053993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.675 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds