Wall clock time and date at job start Tue Mar 31 2020 01:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46917 * 2 1 4 4 H 1.09004 * 109.47619 * 54.99889 * 3 2 1 5 5 C 1.53005 * 109.47129 * 294.99253 * 3 2 1 6 6 C 1.50706 * 109.46849 * 174.99644 * 3 2 1 7 7 O 1.21275 * 120.00058 * 359.97438 * 6 3 2 8 8 N 1.34774 * 119.99598 * 179.97438 * 6 3 2 9 9 C 1.46505 * 119.99650 * 179.97438 * 8 6 3 10 10 H 1.08997 * 115.55200 * 350.58473 * 9 8 6 11 11 C 1.53030 * 117.50189 * 136.27154 * 9 8 6 12 12 C 1.52825 * 117.50028 * 204.89686 * 9 8 6 13 13 C 1.53183 * 117.71096 * 144.90122 * 12 9 8 14 14 C 1.53349 * 108.77000 * 158.89086 * 13 12 9 15 15 N 1.46834 * 108.81690 * 51.30590 * 14 13 12 16 16 C 1.36942 * 120.38497 * 123.11881 * 15 14 13 17 17 H 1.07994 * 119.99728 * 208.88224 * 16 15 14 18 18 C 1.38807 * 119.99533 * 28.89163 * 16 15 14 19 19 N 1.31622 * 120.00467 * 17.84736 * 18 16 15 20 20 Si 1.86808 * 119.99754 * 197.85138 * 18 16 15 21 21 H 1.48498 * 109.47232 * 89.99654 * 20 18 16 22 22 H 1.48500 * 109.46806 * 209.99868 * 20 18 16 23 23 H 1.48500 * 109.46779 * 329.99640 * 20 18 16 24 24 C 1.46851 * 119.23208 * 303.10047 * 15 14 13 25 25 C 1.53180 * 117.71478 * 0.14005 * 12 9 8 26 26 H 1.09001 * 109.46659 * 60.00703 * 1 2 3 27 27 H 1.09000 * 109.47757 * 300.00243 * 1 2 3 28 28 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46659 * 119.99297 * 2 1 3 30 30 H 1.09001 * 109.47315 * 239.99463 * 2 1 3 31 31 H 1.09000 * 109.46891 * 180.02562 * 5 3 2 32 32 H 1.08994 * 109.46893 * 300.00799 * 5 3 2 33 33 H 1.09003 * 109.46831 * 60.00586 * 5 3 2 34 34 H 0.96997 * 120.00343 * 0.02562 * 8 6 3 35 35 H 1.08996 * 117.50569 * 214.95197 * 11 9 8 36 36 H 1.09007 * 117.50078 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.58762 * 278.67956 * 13 12 9 38 38 H 1.08997 * 109.59003 * 39.10189 * 13 12 9 39 39 H 1.09000 * 109.57552 * 291.50426 * 14 13 12 40 40 H 1.08999 * 109.58091 * 171.10742 * 14 13 12 41 41 H 0.96995 * 119.99962 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.58189 * 297.10607 * 24 15 14 43 43 H 1.09004 * 109.57685 * 176.70196 * 24 15 14 44 44 H 1.08996 * 109.58785 * 320.90303 * 25 12 9 45 45 H 1.09010 * 109.58482 * 81.33005 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3075 6 6 3.5419 1.4443 0.1239 7 8 4.1449 0.3952 0.2048 8 7 4.2149 2.6118 0.1449 9 6 5.6749 2.6135 0.2659 10 1 6.1289 1.6492 0.4939 11 6 6.4579 3.5669 -0.6395 12 6 6.3326 3.8604 0.8561 13 6 7.5783 3.6647 1.7258 14 6 8.3621 4.9821 1.7686 15 7 7.4460 6.0663 2.1441 16 6 7.7078 6.8463 3.2389 17 1 6.8940 7.2946 3.7895 18 6 9.0190 7.0609 3.6405 19 7 10.0096 6.8282 2.8056 20 14 9.3779 7.6799 5.3661 21 1 9.5487 6.5231 6.2814 22 1 10.6231 8.4888 5.3528 23 1 8.2469 8.5199 5.8358 24 6 6.2459 6.3049 1.3320 25 6 5.4191 5.0144 1.2806 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.9990 3.1540 -1.3076 32 1 2.0699 1.5873 -2.1491 33 1 0.5490 2.1252 -1.3971 34 1 3.7325 3.4509 0.0806 35 1 7.4272 3.2300 -1.0068 36 1 5.8866 4.1931 -1.3249 37 1 7.2786 3.3849 2.7358 38 1 8.2035 2.8812 1.2977 39 1 8.7866 5.1865 0.7856 40 1 9.1617 4.9077 2.5056 41 1 10.9259 6.9778 3.0864 42 1 6.5393 6.5912 0.3221 43 1 5.6528 7.1011 1.7819 44 1 4.6116 5.1264 0.5572 45 1 5.0030 4.8074 2.2667 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661053993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:37 Heat of formation + Delta-G solvation = -30.380066 kcal Electronic energy + Delta-G solvation = -22490.739667 eV Core-core repulsion = 19314.899652 eV Total energy + Delta-G solvation = -3175.840015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27500 -39.88830 -37.20056 -36.30865 -34.49061 -33.33977 -31.68999 -30.57235 -29.79963 -26.33819 -26.17212 -24.10827 -23.77798 -22.81554 -21.84631 -20.75220 -19.80072 -18.50521 -17.98564 -17.34133 -16.76054 -16.43503 -15.80311 -15.65205 -15.29529 -15.12947 -14.97438 -14.76449 -14.36257 -14.16823 -13.81814 -13.62235 -13.27869 -13.12122 -12.98296 -12.85535 -12.61587 -12.59920 -12.50032 -12.45622 -12.25338 -12.00448 -11.79137 -11.70594 -11.57719 -11.38284 -11.26849 -10.89691 -10.61648 -10.47606 -9.65589 -8.62800 -7.86286 -5.32741 1.46196 1.48364 1.56500 1.58407 2.10495 2.51433 2.94205 3.28448 3.61701 3.67982 3.80852 3.86993 3.87528 3.97474 4.02661 4.12912 4.39665 4.52323 4.54120 4.59998 4.65059 4.72559 4.75811 4.83727 4.90515 4.93448 5.00239 5.02448 5.05906 5.08165 5.13812 5.16571 5.23684 5.30782 5.37632 5.39031 5.49625 5.53148 5.57567 5.65694 5.76683 6.41145 6.55231 7.16243 7.25160 7.88763 8.39625 9.18758 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033034 B = 0.003370 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.403925 B = 8305.890077 C = 8475.117499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.105 4.105 4 H 0.117 0.883 5 C -0.142 4.142 6 C 0.513 3.487 7 O -0.589 6.589 8 N -0.686 5.686 9 C 0.083 3.917 10 H 0.114 0.886 11 C -0.169 4.169 12 C -0.115 4.115 13 C -0.095 4.095 14 C 0.182 3.818 15 N -0.609 5.609 16 C -0.262 4.262 17 H 0.066 0.934 18 C -0.051 4.051 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.145 3.855 25 C -0.082 4.082 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.414 0.586 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.046 0.954 38 H 0.064 0.936 39 H -0.001 1.001 40 H 0.053 0.947 41 H 0.249 0.751 42 H 0.018 0.982 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.959 -8.859 -8.369 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.126 4.126 4 H 0.135 0.865 5 C -0.200 4.200 6 C 0.302 3.698 7 O -0.469 6.469 8 N -0.336 5.336 9 C -0.023 4.023 10 H 0.132 0.868 11 C -0.207 4.207 12 C -0.117 4.117 13 C -0.134 4.134 14 C 0.056 3.944 15 N -0.332 5.332 16 C -0.393 4.393 17 H 0.084 0.916 18 C -0.246 4.246 19 N -0.580 5.580 20 Si 0.793 3.207 21 H -0.215 1.215 22 H -0.222 1.222 23 H -0.192 1.192 24 C 0.019 3.981 25 C -0.121 4.121 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.252 0.748 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.017 0.983 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.074 0.926 44 H 0.105 0.895 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.408 -9.549 -8.294 22.334 hybrid contribution 0.964 0.692 0.934 1.510 sum -17.443 -8.856 -7.361 20.902 Atomic orbital electron populations 1.21814 0.93349 1.02437 1.02916 1.21321 0.97061 0.94075 1.01892 1.21420 0.88699 0.99858 1.02591 0.86491 1.21851 1.03657 1.00383 0.94078 1.21443 0.91442 0.82782 0.74181 1.90663 1.71566 1.33064 1.51569 1.45373 1.05661 1.09340 1.73230 1.21602 0.80767 0.95433 1.04520 0.86828 1.23609 1.01945 1.02245 0.92942 1.21815 0.98064 0.96372 0.95419 1.21630 0.95279 0.98303 0.98185 1.20507 0.91796 0.85362 0.96749 1.44245 1.24612 1.34236 1.30099 1.19526 0.91368 1.24977 1.03390 0.91627 1.25789 0.96277 1.00915 1.01647 1.70182 0.98724 1.54196 1.34885 0.85313 0.77215 0.77706 0.80513 1.21458 1.22195 1.19160 1.21012 0.87976 0.95502 0.93564 1.21451 0.96350 0.93527 1.00796 0.91054 0.91868 0.92295 0.93213 0.92671 0.91003 0.92949 0.89054 0.74846 0.88403 0.87057 0.93474 0.91771 0.98252 0.92906 0.94146 0.96411 0.92589 0.89523 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.67 71.98 0.70 -0.95 16 2 C -0.11 -1.80 4.75 30.59 0.15 -1.66 16 3 C -0.10 -1.65 2.72 -11.54 -0.03 -1.68 16 4 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 5 C -0.14 -1.57 8.84 71.98 0.64 -0.93 16 6 C 0.51 12.56 7.15 87.66 0.63 13.19 16 7 O -0.59 -19.86 15.49 -3.01 -0.05 -19.91 16 8 N -0.69 -15.37 5.24 -442.76 -2.32 -17.69 16 9 C 0.08 2.32 6.13 44.94 0.28 2.59 16 10 H 0.11 3.63 7.40 -2.39 -0.02 3.62 16 11 C -0.17 -4.53 9.87 30.58 0.30 -4.23 16 12 C -0.12 -3.63 1.94 -52.14 -0.10 -3.73 16 13 C -0.09 -3.66 5.83 30.77 0.18 -3.48 16 14 C 0.18 8.83 5.40 86.43 0.47 9.30 16 15 N -0.61 -30.34 2.94 -698.92 -2.05 -32.39 16 16 C -0.26 -14.41 9.54 84.03 0.80 -13.61 16 17 H 0.07 3.51 7.89 -2.91 -0.02 3.48 16 18 C -0.05 -2.85 4.89 84.86 0.41 -2.44 16 19 N -0.93 -55.61 11.23 21.65 0.24 -55.37 16 20 Si 0.96 45.06 29.59 68.60 2.03 47.09 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 C 0.14 5.72 6.52 86.43 0.56 6.28 16 25 C -0.08 -2.51 5.37 30.77 0.17 -2.34 16 26 H 0.07 0.60 6.57 -2.39 -0.02 0.59 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 1.05 7.95 -2.39 -0.02 1.03 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 0.64 7.56 -2.39 -0.02 0.62 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.66 6.57 -2.39 -0.02 0.64 16 34 H 0.41 6.95 6.53 -92.71 -0.61 6.35 16 35 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 2.27 8.10 -2.39 -0.02 2.25 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.05 2.94 5.93 -2.39 -0.01 2.93 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 2.15 7.92 -2.38 -0.02 2.13 16 44 H 0.09 1.93 6.75 -2.39 -0.02 1.91 16 45 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -69.19 351.48 3.35 -65.84 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.35 Total: 16.12 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.14 Total: -3.69 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -4.13 Total: -105.45 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -69.19 3.35 -65.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661053993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.461 kcal (2) G-P(sol) polarization free energy of solvation -69.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds