Wall clock time and date at job start Tue Mar 31 2020 01:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47532 * 2 1 4 4 H 1.08994 * 109.47110 * 304.99754 * 3 2 1 5 5 C 1.53001 * 109.47072 * 64.99654 * 3 2 1 6 6 C 1.50702 * 109.47634 * 184.99589 * 3 2 1 7 7 O 1.21279 * 119.99693 * 0.02562 * 6 3 2 8 8 N 1.34774 * 120.00192 * 180.02562 * 6 3 2 9 9 C 1.46499 * 120.00028 * 180.02562 * 8 6 3 10 10 H 1.09002 * 115.55084 * 9.41308 * 9 8 6 11 11 C 1.53023 * 117.50283 * 223.73157 * 9 8 6 12 12 C 1.52811 * 117.50479 * 155.10282 * 9 8 6 13 13 C 1.53184 * 117.71444 * 359.85724 * 12 9 8 14 14 C 1.53346 * 108.77367 * 158.89253 * 13 12 9 15 15 N 1.46839 * 108.81840 * 51.30468 * 14 13 12 16 16 C 1.36935 * 120.38389 * 123.07750 * 15 14 13 17 17 H 1.08000 * 119.99700 * 330.70124 * 16 15 14 18 18 C 1.38810 * 120.00073 * 150.69580 * 16 15 14 19 19 N 1.31618 * 119.99933 * 342.84813 * 18 16 15 20 20 Si 1.86799 * 120.00111 * 162.84104 * 18 16 15 21 21 H 1.48507 * 109.46871 * 60.00367 * 20 18 16 22 22 H 1.48497 * 109.47300 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47344 * 300.00793 * 20 18 16 24 24 C 1.46845 * 119.23380 * 303.10664 * 15 14 13 25 25 C 1.53190 * 117.71669 * 215.10094 * 12 9 8 26 26 H 1.08998 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47206 * 300.00315 * 1 2 3 28 28 H 1.09008 * 109.46936 * 60.00121 * 1 2 3 29 29 H 1.09000 * 109.47604 * 239.99825 * 2 1 3 30 30 H 1.09008 * 109.46936 * 119.99879 * 2 1 3 31 31 H 1.09003 * 109.47217 * 60.00174 * 5 3 2 32 32 H 1.08998 * 109.47551 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.47381 * 300.00107 * 5 3 2 34 34 H 0.97000 * 119.99862 * 0.02562 * 8 6 3 35 35 H 1.08998 * 117.50701 * 359.97438 * 11 9 8 36 36 H 1.08998 * 117.50387 * 145.01406 * 11 9 8 37 37 H 1.09003 * 109.58602 * 278.67803 * 13 12 9 38 38 H 1.09005 * 109.58616 * 39.10511 * 13 12 9 39 39 H 1.09001 * 109.57613 * 291.50748 * 14 13 12 40 40 H 1.08999 * 109.58245 * 171.10777 * 14 13 12 41 41 H 0.97005 * 119.99978 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.57767 * 297.09993 * 24 15 14 43 43 H 1.09004 * 109.69271 * 176.76910 * 24 15 14 44 44 H 1.08998 * 109.58125 * 320.90070 * 25 12 9 45 45 H 1.09003 * 109.58726 * 81.32524 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5420 1.4443 -0.1237 7 8 4.1450 0.3951 -0.2045 8 7 4.2150 2.6117 -0.1446 9 6 5.6750 2.6135 -0.2655 10 1 6.1291 1.6491 -0.4933 11 6 6.4579 3.5668 0.6400 12 6 6.3328 3.8601 -0.8556 13 6 5.4195 5.0142 -1.2804 14 6 6.2463 6.3047 -1.3319 15 7 7.4465 6.0661 -2.1436 16 6 7.7081 6.8454 -3.2387 17 1 6.8939 7.2876 -3.7937 18 6 9.0197 7.0670 -3.6356 19 7 10.0090 6.8288 -2.8007 20 14 9.3807 7.7030 -5.3544 21 1 8.7213 9.0201 -5.5435 22 1 10.8477 7.8538 -5.5285 23 1 8.8599 6.7403 -6.3580 24 6 8.3626 4.9818 -1.7677 25 6 7.5787 3.6645 -1.7252 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.0698 1.5875 2.1492 32 1 1.9982 3.1543 1.3072 33 1 0.5489 2.1253 1.3969 34 1 3.7327 3.4508 -0.0797 35 1 5.8867 4.1930 1.3253 36 1 7.4270 3.2296 1.0078 37 1 5.0035 4.8071 -2.2664 38 1 4.6118 5.1263 -0.5569 39 1 6.5394 6.5912 -0.3219 40 1 5.6533 7.1008 -1.7820 41 1 10.9256 6.9833 -3.0782 42 1 8.7868 5.1863 -0.7847 43 1 9.1639 4.9065 -2.5028 44 1 8.2037 2.8809 -1.2969 45 1 7.2791 3.3847 -2.7352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661053994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:41 Heat of formation + Delta-G solvation = -12.198702 kcal Electronic energy + Delta-G solvation = -22489.283877 eV Core-core repulsion = 19314.232265 eV Total energy + Delta-G solvation = -3175.051612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.16211 -38.57288 -35.73025 -35.32391 -33.12018 -31.60833 -30.13478 -29.71164 -28.22261 -25.58819 -24.34506 -22.86481 -22.45106 -21.34675 -20.54735 -19.83321 -18.21000 -17.26281 -16.49000 -16.09071 -15.59854 -14.91786 -14.65911 -14.22653 -14.11020 -13.69647 -13.52593 -13.42439 -13.15086 -12.91514 -12.69383 -12.41054 -12.20869 -11.97741 -11.81276 -11.62815 -11.57075 -11.30565 -11.06096 -10.94758 -10.91365 -10.71990 -10.44861 -10.33101 -9.96219 -9.82783 -9.67661 -9.58681 -9.32183 -8.44837 -8.42619 -6.63428 -5.78674 -3.22724 2.60755 3.12434 3.38213 3.44269 3.45589 4.19334 4.47253 4.49684 4.56502 4.68714 5.00289 5.05863 5.11870 5.15090 5.15480 5.23185 5.31901 5.39641 5.49727 5.54967 5.62065 5.64388 5.69673 5.81496 5.90037 6.00274 6.07257 6.07620 6.12593 6.12863 6.29358 6.44163 6.60196 6.62786 6.65246 6.70547 6.84219 6.96395 7.37196 7.53946 7.67965 7.79220 8.24869 8.46971 9.22044 9.85436 10.42276 11.29008 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033112 B = 0.003368 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.419893 B = 8311.268657 C = 8482.216105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.112 4.112 4 H 0.097 0.903 5 C -0.145 4.145 6 C 0.517 3.483 7 O -0.544 6.544 8 N -0.695 5.695 9 C 0.068 3.932 10 H 0.131 0.869 11 C -0.183 4.183 12 C -0.097 4.097 13 C -0.097 4.097 14 C 0.150 3.850 15 N -0.589 5.589 16 C -0.255 4.255 17 H 0.063 0.937 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.174 3.826 25 C -0.106 4.106 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.400 0.600 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.019 0.981 40 H 0.054 0.946 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.090 0.910 44 H 0.051 0.949 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.079 -9.101 7.672 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.133 4.133 4 H 0.115 0.885 5 C -0.203 4.203 6 C 0.304 3.696 7 O -0.421 6.421 8 N -0.345 5.345 9 C -0.037 4.037 10 H 0.148 0.852 11 C -0.221 4.221 12 C -0.098 4.098 13 C -0.136 4.136 14 C 0.023 3.977 15 N -0.311 5.311 16 C -0.385 4.385 17 H 0.081 0.919 18 C -0.195 4.195 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.048 3.952 25 C -0.145 4.145 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.235 0.765 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.463 -9.816 7.585 19.824 hybrid contribution 0.079 0.811 -0.755 1.111 sum -15.384 -9.005 6.830 19.089 Atomic orbital electron populations 1.21847 0.95546 1.01844 1.01857 1.21332 0.95231 0.94202 1.03523 1.21362 0.91926 0.99459 1.00562 0.88508 1.21831 1.02286 1.00260 0.95916 1.20661 0.89826 0.83565 0.75557 1.90677 1.70348 1.31462 1.49611 1.45449 1.06719 1.08604 1.73697 1.21901 0.79344 0.97020 1.05476 0.85176 1.23527 1.01651 1.02846 0.94108 1.21962 0.98670 0.94921 0.94281 1.21627 0.96153 0.96040 0.99826 1.20833 0.89143 0.93207 0.94479 1.43954 1.23337 1.34117 1.29735 1.19140 0.91203 1.25610 1.02517 0.91881 1.25060 0.96351 0.99817 0.98314 1.70018 0.98788 1.52294 1.33465 0.86382 0.76907 0.78823 0.84722 1.20890 1.21629 1.21011 1.20755 0.92041 0.83251 0.99194 1.21880 0.94084 1.00653 0.97891 0.92514 0.92462 0.92686 0.91100 0.91357 0.92030 0.92175 0.91176 0.76479 0.89136 0.88399 0.91792 0.93684 0.96337 0.92763 0.93559 0.96385 0.89192 0.93043 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.70 16 2 C -0.10 -0.97 4.75 -26.74 -0.13 -1.10 16 3 C -0.11 -1.03 2.72 -91.77 -0.25 -1.28 16 4 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.15 -1.07 8.84 37.16 0.33 -0.74 16 6 C 0.52 6.81 7.15 -10.99 -0.08 6.73 16 7 O -0.54 -9.28 15.49 5.56 0.09 -9.20 16 8 N -0.70 -8.77 5.24 -53.89 -0.28 -9.05 16 9 C 0.07 1.01 6.13 -68.02 -0.42 0.60 16 10 H 0.13 2.13 7.40 -51.93 -0.38 1.75 16 11 C -0.18 -2.68 9.87 -26.76 -0.26 -2.94 16 12 C -0.10 -1.61 1.94 -154.45 -0.30 -1.91 16 13 C -0.10 -1.60 5.37 -26.46 -0.14 -1.74 16 14 C 0.15 3.06 6.51 -3.68 -0.02 3.03 16 15 N -0.59 -14.57 2.93 -172.27 -0.51 -15.07 16 16 C -0.25 -6.94 9.54 -15.06 -0.14 -7.08 16 17 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 18 C 0.00 0.09 4.90 -17.43 -0.09 0.01 16 19 N -0.90 -26.04 11.21 55.49 0.62 -25.41 16 20 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.17 4.10 5.39 -3.68 -0.02 4.08 16 25 C -0.11 -2.03 5.83 -26.45 -0.15 -2.19 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 28 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.07 0.76 7.95 -51.93 -0.41 0.34 16 30 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.40 7.56 -51.93 -0.39 0.01 16 33 H 0.07 0.41 6.57 -51.93 -0.34 0.07 16 34 H 0.40 4.20 6.53 -40.82 -0.27 3.94 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.05 1.08 7.92 -51.93 -0.41 0.67 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 44 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -30.92 351.48 -8.96 -39.88 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.83 Total: 2.24 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.32 Total: -5.24 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.17 Total: -49.54 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.92 -8.96 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661053994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.681 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds