Wall clock time and date at job start Tue Mar 31 2020 01:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47532 * 2 1 4 4 H 1.08994 * 109.47110 * 304.99754 * 3 2 1 5 5 C 1.53001 * 109.47072 * 64.99654 * 3 2 1 6 6 C 1.50702 * 109.47634 * 184.99589 * 3 2 1 7 7 O 1.21279 * 119.99693 * 0.02562 * 6 3 2 8 8 N 1.34774 * 120.00192 * 180.02562 * 6 3 2 9 9 C 1.46499 * 120.00028 * 180.02562 * 8 6 3 10 10 H 1.09002 * 115.55084 * 9.41308 * 9 8 6 11 11 C 1.53023 * 117.50283 * 223.73157 * 9 8 6 12 12 C 1.52811 * 117.50479 * 155.10282 * 9 8 6 13 13 C 1.53184 * 117.71444 * 359.85724 * 12 9 8 14 14 C 1.53346 * 108.77367 * 158.89253 * 13 12 9 15 15 N 1.46839 * 108.81840 * 51.30468 * 14 13 12 16 16 C 1.36935 * 120.38389 * 123.07750 * 15 14 13 17 17 H 1.08000 * 119.99700 * 330.70124 * 16 15 14 18 18 C 1.38810 * 120.00073 * 150.69580 * 16 15 14 19 19 N 1.31618 * 119.99933 * 342.84813 * 18 16 15 20 20 Si 1.86799 * 120.00111 * 162.84104 * 18 16 15 21 21 H 1.48507 * 109.46871 * 60.00367 * 20 18 16 22 22 H 1.48497 * 109.47300 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47344 * 300.00793 * 20 18 16 24 24 C 1.46845 * 119.23380 * 303.10664 * 15 14 13 25 25 C 1.53190 * 117.71669 * 215.10094 * 12 9 8 26 26 H 1.08998 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47206 * 300.00315 * 1 2 3 28 28 H 1.09008 * 109.46936 * 60.00121 * 1 2 3 29 29 H 1.09000 * 109.47604 * 239.99825 * 2 1 3 30 30 H 1.09008 * 109.46936 * 119.99879 * 2 1 3 31 31 H 1.09003 * 109.47217 * 60.00174 * 5 3 2 32 32 H 1.08998 * 109.47551 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.47381 * 300.00107 * 5 3 2 34 34 H 0.97000 * 119.99862 * 0.02562 * 8 6 3 35 35 H 1.08998 * 117.50701 * 359.97438 * 11 9 8 36 36 H 1.08998 * 117.50387 * 145.01406 * 11 9 8 37 37 H 1.09003 * 109.58602 * 278.67803 * 13 12 9 38 38 H 1.09005 * 109.58616 * 39.10511 * 13 12 9 39 39 H 1.09001 * 109.57613 * 291.50748 * 14 13 12 40 40 H 1.08999 * 109.58245 * 171.10777 * 14 13 12 41 41 H 0.97005 * 119.99978 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.57767 * 297.09993 * 24 15 14 43 43 H 1.09004 * 109.69271 * 176.76910 * 24 15 14 44 44 H 1.08998 * 109.58125 * 320.90070 * 25 12 9 45 45 H 1.09003 * 109.58726 * 81.32524 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5420 1.4443 -0.1237 7 8 4.1450 0.3951 -0.2045 8 7 4.2150 2.6117 -0.1446 9 6 5.6750 2.6135 -0.2655 10 1 6.1291 1.6491 -0.4933 11 6 6.4579 3.5668 0.6400 12 6 6.3328 3.8601 -0.8556 13 6 5.4195 5.0142 -1.2804 14 6 6.2463 6.3047 -1.3319 15 7 7.4465 6.0661 -2.1436 16 6 7.7081 6.8454 -3.2387 17 1 6.8939 7.2876 -3.7937 18 6 9.0197 7.0670 -3.6356 19 7 10.0090 6.8288 -2.8007 20 14 9.3807 7.7030 -5.3544 21 1 8.7213 9.0201 -5.5435 22 1 10.8477 7.8538 -5.5285 23 1 8.8599 6.7403 -6.3580 24 6 8.3626 4.9818 -1.7677 25 6 7.5787 3.6645 -1.7252 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.0698 1.5875 2.1492 32 1 1.9982 3.1543 1.3072 33 1 0.5489 2.1253 1.3969 34 1 3.7327 3.4508 -0.0797 35 1 5.8867 4.1930 1.3253 36 1 7.4270 3.2296 1.0078 37 1 5.0035 4.8071 -2.2664 38 1 4.6118 5.1263 -0.5569 39 1 6.5394 6.5912 -0.3219 40 1 5.6533 7.1008 -1.7820 41 1 10.9256 6.9833 -3.0782 42 1 8.7868 5.1863 -0.7847 43 1 9.1639 4.9065 -2.5028 44 1 8.2037 2.8809 -1.2969 45 1 7.2791 3.3847 -2.7352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661053994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:40 Heat of formation + Delta-G solvation = -30.360060 kcal Electronic energy + Delta-G solvation = -22490.071413 eV Core-core repulsion = 19314.232265 eV Total energy + Delta-G solvation = -3175.839148 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27502 -39.88728 -37.19771 -36.30888 -34.49003 -33.33927 -31.68887 -30.57226 -29.79806 -26.33687 -26.17051 -24.10567 -23.77801 -22.81450 -21.84578 -20.75219 -19.80074 -18.50485 -17.98517 -17.33954 -16.75752 -16.43542 -15.80457 -15.65177 -15.29293 -15.12919 -14.97308 -14.76275 -14.36239 -14.16763 -13.81421 -13.62310 -13.27866 -13.11125 -12.97762 -12.84822 -12.61806 -12.56288 -12.50002 -12.46884 -12.28107 -12.02358 -11.79172 -11.70583 -11.57780 -11.38350 -11.26836 -10.89550 -10.61428 -10.47121 -9.65516 -8.61685 -7.86008 -5.33031 1.46357 1.49281 1.55616 1.58383 2.10486 2.51661 2.94305 3.28943 3.61813 3.68039 3.80936 3.86955 3.87553 3.97549 4.02679 4.12992 4.39677 4.52396 4.54078 4.60016 4.65066 4.72694 4.75799 4.83779 4.90553 4.93474 5.00213 5.02529 5.05909 5.08293 5.13737 5.16602 5.23730 5.30847 5.37741 5.38982 5.49633 5.53175 5.57567 5.65534 5.77085 6.41479 6.55193 7.16572 7.25131 7.88982 8.40067 9.18930 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033112 B = 0.003368 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.419893 B = 8311.268657 C = 8482.216105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.105 4.105 4 H 0.117 0.883 5 C -0.142 4.142 6 C 0.513 3.487 7 O -0.589 6.589 8 N -0.686 5.686 9 C 0.083 3.917 10 H 0.114 0.886 11 C -0.169 4.169 12 C -0.115 4.115 13 C -0.082 4.082 14 C 0.145 3.855 15 N -0.609 5.609 16 C -0.264 4.264 17 H 0.066 0.934 18 C -0.050 4.050 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.274 1.274 22 H -0.295 1.295 23 H -0.280 1.280 24 C 0.182 3.818 25 C -0.095 4.095 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.414 0.586 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.018 0.982 40 H 0.055 0.945 41 H 0.250 0.750 42 H -0.001 1.001 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.882 -8.845 8.345 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.126 4.126 4 H 0.135 0.865 5 C -0.200 4.200 6 C 0.302 3.698 7 O -0.469 6.469 8 N -0.336 5.336 9 C -0.023 4.023 10 H 0.132 0.868 11 C -0.207 4.207 12 C -0.117 4.117 13 C -0.121 4.121 14 C 0.020 3.980 15 N -0.332 5.332 16 C -0.395 4.395 17 H 0.083 0.917 18 C -0.246 4.246 19 N -0.580 5.580 20 Si 0.793 3.207 21 H -0.199 1.199 22 H -0.221 1.221 23 H -0.206 1.206 24 C 0.056 3.944 25 C -0.134 4.134 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.252 0.748 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.017 0.983 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.319 -9.540 8.270 22.249 hybrid contribution 0.942 0.712 -0.931 1.503 sum -17.377 -8.828 7.340 20.827 Atomic orbital electron populations 1.21813 0.93348 1.02438 1.02916 1.21321 0.97061 0.94072 1.01894 1.21416 0.88698 0.99861 1.02590 0.86498 1.21851 1.03661 1.00379 0.94082 1.21443 0.91443 0.82782 0.74181 1.90664 1.71570 1.33059 1.51571 1.45371 1.05663 1.09341 1.73225 1.21598 0.80766 0.95437 1.04521 0.86824 1.23605 1.01951 1.02246 0.92940 1.21813 0.98066 0.96370 0.95418 1.21453 0.96354 0.93542 1.00781 1.21008 0.87977 0.95490 0.93564 1.44221 1.24622 1.34274 1.30059 1.19484 0.91372 1.25184 1.03424 0.91679 1.25804 0.96294 1.00829 1.01652 1.70171 0.98762 1.53965 1.35082 0.85382 0.76266 0.78532 0.80523 1.19927 1.22097 1.20627 1.20500 0.91794 0.85347 0.96743 1.21633 0.95278 0.98317 0.98173 0.92291 0.91046 0.91878 0.93212 0.92670 0.92941 0.91006 0.89059 0.74849 0.87064 0.88400 0.92519 0.89529 0.96427 0.92597 0.94130 0.98277 0.92899 0.91768 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.67 71.98 0.70 -0.95 16 2 C -0.11 -1.80 4.75 30.59 0.15 -1.66 16 3 C -0.10 -1.66 2.72 -11.54 -0.03 -1.69 16 4 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 5 C -0.14 -1.57 8.84 71.98 0.64 -0.93 16 6 C 0.51 12.58 7.15 87.66 0.63 13.20 16 7 O -0.59 -19.88 15.49 -3.03 -0.05 -19.92 16 8 N -0.69 -15.40 5.24 -442.80 -2.32 -17.72 16 9 C 0.08 2.32 6.13 44.94 0.28 2.60 16 10 H 0.11 3.64 7.40 -2.39 -0.02 3.62 16 11 C -0.17 -4.54 9.87 30.58 0.30 -4.24 16 12 C -0.12 -3.64 1.94 -52.14 -0.10 -3.74 16 13 C -0.08 -2.51 5.37 30.77 0.17 -2.35 16 14 C 0.14 5.74 6.51 86.43 0.56 6.30 16 15 N -0.61 -30.38 2.93 -698.93 -2.05 -32.43 16 16 C -0.26 -14.54 9.54 84.03 0.80 -13.74 16 17 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 18 C -0.05 -2.82 4.90 84.86 0.42 -2.41 16 19 N -0.93 -55.60 11.21 21.65 0.24 -55.36 16 20 Si 0.96 45.03 29.59 68.60 2.03 47.06 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 C 0.18 8.85 5.39 86.43 0.47 9.32 16 25 C -0.09 -3.66 5.83 30.77 0.18 -3.48 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.60 6.56 -2.39 -0.02 0.59 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.05 1.05 7.95 -2.39 -0.02 1.03 16 30 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.64 7.56 -2.39 -0.02 0.63 16 33 H 0.09 0.66 6.57 -2.39 -0.02 0.64 16 34 H 0.41 6.97 6.53 -92.71 -0.61 6.37 16 35 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 1.93 6.75 -2.38 -0.02 1.91 16 39 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 2.15 7.92 -2.39 -0.02 2.14 16 41 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 42 H 0.00 -0.05 8.14 -2.39 -0.02 -0.06 16 43 H 0.05 2.94 5.95 -2.38 -0.01 2.93 16 44 H 0.06 2.27 8.10 -2.39 -0.02 2.25 16 45 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -69.17 351.48 3.35 -65.82 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.35 Total: 16.32 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 5.14 Total: -3.77 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -4.13 Total: -105.51 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.05 Total: -19.92 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.17 3.35 -65.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661053994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.462 kcal (2) G-P(sol) polarization free energy of solvation -69.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds