Wall clock time and date at job start Tue Mar 31 2020 01:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 H 1.09002 * 109.46821 * 304.99690 * 3 2 1 5 5 C 1.52995 * 109.47187 * 185.00192 * 3 2 1 6 6 N 1.46499 * 109.47232 * 184.99798 * 5 3 2 7 7 C 1.34780 * 120.00321 * 179.97438 * 6 5 3 8 8 O 1.21278 * 119.99404 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99920 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.46771 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.64312 * 54.99759 * 10 9 7 12 12 C 1.53022 * 109.64117 * 294.57736 * 10 9 7 13 13 C 1.50167 * 110.09470 * 191.09446 * 12 10 9 14 14 C 1.29442 * 124.14806 * 16.72432 * 13 12 10 15 15 C 1.50073 * 124.07254 * 359.75302 * 14 13 12 16 16 C 1.53018 * 110.15025 * 17.13446 * 15 14 13 17 17 N 1.46496 * 109.47129 * 64.99526 * 3 2 1 18 18 C 1.36934 * 120.00548 * 275.00076 * 17 3 2 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 3 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 3 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 H 1.09003 * 109.47601 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47130 * 300.00509 * 1 2 3 28 28 H 1.09000 * 109.47158 * 60.00214 * 1 2 3 29 29 H 1.08994 * 109.47163 * 239.99474 * 2 1 3 30 30 H 1.09000 * 109.47158 * 119.99786 * 2 1 3 31 31 H 1.08999 * 109.47166 * 304.99634 * 5 3 2 32 32 H 1.09004 * 109.47329 * 64.99320 * 5 3 2 33 33 H 0.97002 * 119.99569 * 359.97438 * 6 5 3 34 34 H 1.08991 * 109.47413 * 299.99693 * 9 7 6 35 35 H 1.09004 * 109.47538 * 60.00312 * 9 7 6 36 36 H 1.08999 * 109.36345 * 311.08401 * 12 10 9 37 37 H 1.09001 * 109.35488 * 70.67751 * 12 10 9 38 38 H 1.08001 * 117.89454 * 196.91893 * 13 12 10 39 39 H 1.08001 * 117.96669 * 179.73450 * 14 13 12 40 40 H 1.09005 * 109.35516 * 256.92626 * 15 14 13 41 41 H 1.09003 * 109.24588 * 137.27209 * 15 14 13 42 42 H 1.08999 * 109.64652 * 190.87591 * 16 15 14 43 43 H 1.09005 * 109.64306 * 70.24356 * 16 15 14 44 44 H 0.96999 * 119.99694 * 95.00601 * 17 3 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 4.0631 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0859 8 8 6.1635 2.1480 -0.2565 9 6 5.8982 4.4747 0.0366 10 6 7.4232 4.4763 -0.0877 11 1 7.7155 3.9888 -1.0177 12 6 8.0368 3.7303 1.0991 13 6 9.5213 3.9533 1.1368 14 6 10.1308 4.8978 0.4950 15 6 9.4393 5.9003 -0.3819 16 6 7.9397 5.9207 -0.0783 17 7 1.6524 2.0975 1.2517 18 6 0.4156 2.6735 1.3687 19 1 -0.2742 2.6446 0.5382 20 6 0.0486 3.2946 2.5546 21 7 -1.1404 3.8479 2.6672 22 14 1.2416 3.3440 3.9912 23 1 1.0380 2.1463 4.8451 24 1 2.6349 3.3546 3.4775 25 1 1.0002 4.5704 4.7930 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9954 0.8311 0.6659 32 1 3.8499 1.0375 -1.0961 33 1 3.4410 3.5483 0.1307 34 1 5.4681 5.0874 -0.7555 35 1 5.6127 4.8820 1.0066 36 1 7.5952 4.0988 2.0250 37 1 7.8303 2.6645 1.0017 38 1 10.1182 3.2808 1.7351 39 1 11.2036 4.9691 0.5972 40 1 9.5927 5.6324 -1.4273 41 1 9.8589 6.8892 -0.1970 42 1 7.4194 6.5009 -0.8402 43 1 7.7706 6.3638 0.9032 44 1 2.2719 2.1232 1.9977 45 1 -1.3970 4.2816 3.4960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665828481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:49 Heat of formation + Delta-G solvation = -38.206764 kcal Electronic energy + Delta-G solvation = -22265.979671 eV Core-core repulsion = 19089.800265 eV Total energy + Delta-G solvation = -3176.179406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.90498 -38.27644 -36.81335 -33.76810 -32.84395 -32.34116 -30.82787 -30.29980 -28.70386 -26.82282 -23.67151 -23.18893 -22.44327 -21.25356 -20.28513 -19.72909 -18.05249 -17.72320 -16.58720 -16.16764 -15.61930 -15.49492 -14.93790 -14.37226 -14.21121 -13.97227 -13.55873 -13.27097 -13.02410 -12.97017 -12.75722 -12.64711 -12.39880 -12.38240 -12.11082 -11.67128 -11.50016 -11.16344 -11.01534 -10.77814 -10.71343 -10.63943 -10.42695 -10.32389 -10.21859 -10.02613 -9.52978 -9.49334 -9.03409 -9.00584 -8.71124 -7.37466 -5.84629 -3.20672 2.22918 2.88466 3.30502 3.35237 3.40556 3.49845 4.51683 4.55647 4.61286 4.75343 5.02714 5.08710 5.18882 5.22906 5.26445 5.31205 5.41912 5.43436 5.52399 5.61004 5.68886 5.73237 5.74736 5.78114 5.87280 5.88700 5.90488 6.06259 6.07163 6.23421 6.26634 6.36129 6.46963 6.52563 6.57533 6.58688 6.81035 6.90710 6.93256 7.27128 7.85142 7.91376 8.33694 8.50650 9.11786 9.84179 10.03756 11.33032 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.004075 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.211041 B = 6869.338053 C = 7726.138314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.062 0.938 5 C 0.112 3.888 6 N -0.718 5.718 7 C 0.509 3.491 8 O -0.551 6.551 9 C -0.140 4.140 10 C -0.068 4.068 11 H 0.079 0.921 12 C -0.094 4.094 13 C -0.143 4.143 14 C -0.170 4.170 15 C -0.088 4.088 16 C -0.117 4.117 17 N -0.747 5.747 18 C -0.242 4.242 19 H 0.095 0.905 20 C 0.007 3.993 21 N -0.931 5.931 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.278 1.278 25 H -0.292 1.292 26 H 0.032 0.968 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.410 0.590 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.217 1.792 -6.169 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.080 0.920 5 C -0.013 4.013 6 N -0.370 5.370 7 C 0.295 3.705 8 O -0.430 6.430 9 C -0.180 4.180 10 C -0.087 4.087 11 H 0.098 0.902 12 C -0.131 4.131 13 C -0.161 4.161 14 C -0.188 4.188 15 C -0.125 4.125 16 C -0.155 4.155 17 N -0.390 5.390 18 C -0.372 4.372 19 H 0.112 0.888 20 C -0.189 4.189 21 N -0.578 5.578 22 Si 0.711 3.289 23 H -0.212 1.212 24 H -0.204 1.204 25 H -0.219 1.219 26 H 0.051 0.949 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.246 0.754 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.513 1.234 -6.330 18.663 hybrid contribution 0.443 0.332 1.336 1.446 sum 17.956 1.566 -4.994 18.703 Atomic orbital electron populations 1.21783 0.95222 0.99713 1.03766 1.22036 0.97336 0.97896 1.00084 1.20542 0.89964 0.92928 0.90710 0.92024 1.21692 0.95424 0.82894 1.01275 1.46080 1.07391 1.10677 1.72846 1.20651 0.82293 0.91313 0.76211 1.90629 1.55868 1.46710 1.49793 1.21779 0.97032 0.94639 1.04534 1.20923 0.92250 0.95555 0.99962 0.90233 1.20678 0.92077 1.02709 0.97648 1.22142 0.96722 0.97777 0.99467 1.21990 0.99274 0.97560 0.99951 1.20408 0.94970 0.98055 0.99041 1.21692 0.95366 0.96384 1.02047 1.42827 1.16795 1.67667 1.11740 1.19057 0.90605 1.27643 0.99885 0.88765 1.24654 0.96370 1.00331 0.97514 1.69693 1.19288 1.42114 1.26740 0.86628 0.81079 0.77341 0.83873 1.21189 1.20381 1.21855 0.94860 0.89365 0.93882 0.93571 0.92696 0.92034 0.91590 0.75438 0.88823 0.88863 0.91415 0.88939 0.88330 0.88407 0.91084 0.91333 0.91522 0.91650 0.80528 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.18 37.16 0.34 -2.29 16 2 C -0.13 -2.19 5.61 -26.73 -0.15 -2.34 16 3 C 0.17 2.93 2.59 -67.94 -0.18 2.76 16 4 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 5 C 0.11 1.76 5.23 -4.05 -0.02 1.74 16 6 N -0.72 -10.93 5.39 -60.30 -0.32 -11.25 16 7 C 0.51 7.57 7.59 -10.99 -0.08 7.49 16 8 O -0.55 -9.67 14.06 5.56 0.08 -9.59 16 9 C -0.14 -1.61 5.18 -27.88 -0.14 -1.75 16 10 C -0.07 -0.77 1.87 -90.40 -0.17 -0.94 16 11 H 0.08 1.00 7.94 -51.93 -0.41 0.59 16 12 C -0.09 -1.15 5.06 -28.13 -0.14 -1.29 16 13 C -0.14 -1.58 9.80 -35.85 -0.35 -1.93 16 14 C -0.17 -1.68 9.80 -35.90 -0.35 -2.03 16 15 C -0.09 -0.78 6.12 -28.18 -0.17 -0.95 16 16 C -0.12 -1.09 5.31 -26.52 -0.14 -1.23 16 17 N -0.75 -15.78 4.31 -53.43 -0.23 -16.01 16 18 C -0.24 -6.15 8.24 -15.06 -0.12 -6.27 16 19 H 0.09 2.58 7.55 -52.48 -0.40 2.18 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 21 N -0.93 -27.72 13.97 55.49 0.78 -26.94 16 22 Si 0.88 21.06 27.74 -169.99 -4.71 16.34 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 1.89 5.99 -51.93 -0.31 1.58 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.41 6.22 8.14 -40.82 -0.33 5.89 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.09 1.33 6.25 -51.93 -0.32 1.01 16 38 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 44 H 0.36 7.79 5.66 -40.82 -0.23 7.56 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -29.44 353.03 -8.81 -38.25 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -7.93 Total: 12.81 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.78 Total: -8.94 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.22 Total: -54.20 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.71 Total: 16.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.44 -8.81 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665828481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.045 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds