Wall clock time and date at job start Tue Mar 31 2020 01:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 H 1.09002 * 109.46821 * 304.99690 * 3 2 1 5 5 C 1.52995 * 109.47187 * 185.00192 * 3 2 1 6 6 N 1.46499 * 109.47232 * 184.99798 * 5 3 2 7 7 C 1.34780 * 120.00321 * 179.97438 * 6 5 3 8 8 O 1.21278 * 119.99404 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99920 * 179.97438 * 7 6 5 10 10 C 1.53003 * 109.46771 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.64312 * 54.99759 * 10 9 7 12 12 C 1.53022 * 109.64117 * 294.57736 * 10 9 7 13 13 C 1.50167 * 110.09470 * 191.09446 * 12 10 9 14 14 C 1.29442 * 124.14806 * 16.72432 * 13 12 10 15 15 C 1.50073 * 124.07254 * 359.75302 * 14 13 12 16 16 C 1.53018 * 110.15025 * 17.13446 * 15 14 13 17 17 N 1.46496 * 109.47129 * 64.99526 * 3 2 1 18 18 C 1.36934 * 120.00548 * 275.00076 * 17 3 2 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 3 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 3 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 H 1.09003 * 109.47601 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47130 * 300.00509 * 1 2 3 28 28 H 1.09000 * 109.47158 * 60.00214 * 1 2 3 29 29 H 1.08994 * 109.47163 * 239.99474 * 2 1 3 30 30 H 1.09000 * 109.47158 * 119.99786 * 2 1 3 31 31 H 1.08999 * 109.47166 * 304.99634 * 5 3 2 32 32 H 1.09004 * 109.47329 * 64.99320 * 5 3 2 33 33 H 0.97002 * 119.99569 * 359.97438 * 6 5 3 34 34 H 1.08991 * 109.47413 * 299.99693 * 9 7 6 35 35 H 1.09004 * 109.47538 * 60.00312 * 9 7 6 36 36 H 1.08999 * 109.36345 * 311.08401 * 12 10 9 37 37 H 1.09001 * 109.35488 * 70.67751 * 12 10 9 38 38 H 1.08001 * 117.89454 * 196.91893 * 13 12 10 39 39 H 1.08001 * 117.96669 * 179.73450 * 14 13 12 40 40 H 1.09005 * 109.35516 * 256.92626 * 15 14 13 41 41 H 1.09003 * 109.24588 * 137.27209 * 15 14 13 42 42 H 1.08999 * 109.64652 * 190.87591 * 16 15 14 43 43 H 1.09005 * 109.64306 * 70.24356 * 16 15 14 44 44 H 0.96999 * 119.99694 * 95.00601 * 17 3 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 4.0631 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0859 8 8 6.1635 2.1480 -0.2565 9 6 5.8982 4.4747 0.0366 10 6 7.4232 4.4763 -0.0877 11 1 7.7155 3.9888 -1.0177 12 6 8.0368 3.7303 1.0991 13 6 9.5213 3.9533 1.1368 14 6 10.1308 4.8978 0.4950 15 6 9.4393 5.9003 -0.3819 16 6 7.9397 5.9207 -0.0783 17 7 1.6524 2.0975 1.2517 18 6 0.4156 2.6735 1.3687 19 1 -0.2742 2.6446 0.5382 20 6 0.0486 3.2946 2.5546 21 7 -1.1404 3.8479 2.6672 22 14 1.2416 3.3440 3.9912 23 1 1.0380 2.1463 4.8451 24 1 2.6349 3.3546 3.4775 25 1 1.0002 4.5704 4.7930 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9954 0.8311 0.6659 32 1 3.8499 1.0375 -1.0961 33 1 3.4410 3.5483 0.1307 34 1 5.4681 5.0874 -0.7555 35 1 5.6127 4.8820 1.0066 36 1 7.5952 4.0988 2.0250 37 1 7.8303 2.6645 1.0017 38 1 10.1182 3.2808 1.7351 39 1 11.2036 4.9691 0.5972 40 1 9.5927 5.6324 -1.4273 41 1 9.8589 6.8892 -0.1970 42 1 7.4194 6.5009 -0.8402 43 1 7.7706 6.3638 0.9032 44 1 2.2719 2.1232 1.9977 45 1 -1.3970 4.2816 3.4960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665828481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:49 Heat of formation + Delta-G solvation = -55.844805 kcal Electronic energy + Delta-G solvation = -22266.744514 eV Core-core repulsion = 19089.800265 eV Total energy + Delta-G solvation = -3176.944249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01750 -39.25952 -38.26295 -35.21636 -34.16953 -33.67978 -32.07842 -31.59923 -30.02030 -27.94154 -25.26770 -24.22509 -23.78596 -22.20879 -21.74029 -20.96719 -19.58923 -18.85892 -17.78687 -17.19565 -17.02972 -16.62041 -16.24300 -15.90255 -15.32692 -15.10063 -14.77168 -14.65417 -14.45865 -14.42499 -14.01508 -13.78220 -13.53336 -13.18737 -13.11554 -12.95346 -12.88401 -12.84053 -12.43455 -12.28856 -12.11133 -11.88793 -11.62761 -11.58782 -11.50159 -11.41626 -11.01410 -10.96711 -10.62025 -9.98984 -9.81686 -9.28779 -7.94841 -5.26977 1.39680 1.42611 1.43351 1.48904 1.72740 2.34145 2.52418 3.37164 3.58543 3.71965 3.79110 3.87207 3.91504 4.14778 4.28304 4.32603 4.42863 4.45470 4.49096 4.55359 4.58821 4.72032 4.76001 4.78606 4.81993 4.84036 4.96271 5.05611 5.07857 5.10225 5.14223 5.19444 5.23980 5.38427 5.47928 5.51649 5.59195 5.72169 5.80356 5.87905 6.10080 6.27823 6.65148 7.13827 7.32781 7.88496 8.07331 9.26241 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.004075 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.211041 B = 6869.338053 C = 7726.138314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.169 3.831 4 H 0.059 0.941 5 C 0.121 3.879 6 N -0.720 5.720 7 C 0.506 3.494 8 O -0.580 6.580 9 C -0.135 4.135 10 C -0.065 4.065 11 H 0.064 0.936 12 C -0.092 4.092 13 C -0.167 4.167 14 C -0.161 4.161 15 C -0.091 4.091 16 C -0.114 4.114 17 N -0.746 5.746 18 C -0.205 4.205 19 H 0.068 0.932 20 C -0.059 4.059 21 N -0.983 5.983 22 Si 0.941 3.059 23 H -0.292 1.292 24 H -0.252 1.252 25 H -0.302 1.302 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.411 0.589 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.363 0.637 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.398 2.136 -6.988 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.077 0.923 5 C -0.004 4.004 6 N -0.372 5.372 7 C 0.294 3.706 8 O -0.460 6.460 9 C -0.175 4.175 10 C -0.084 4.084 11 H 0.083 0.917 12 C -0.129 4.129 13 C -0.185 4.185 14 C -0.179 4.179 15 C -0.128 4.128 16 C -0.151 4.151 17 N -0.389 5.389 18 C -0.336 4.336 19 H 0.086 0.914 20 C -0.251 4.251 21 N -0.635 5.635 22 Si 0.771 3.229 23 H -0.219 1.219 24 H -0.176 1.176 25 H -0.229 1.229 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.247 0.753 34 H 0.135 0.865 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.196 0.804 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.743 1.552 -7.184 21.067 hybrid contribution -0.224 0.143 1.456 1.480 sum 19.519 1.695 -5.728 20.413 Atomic orbital electron populations 1.21694 0.96353 1.00427 1.01614 1.21970 0.96138 0.97161 1.01632 1.20679 0.91309 0.93200 0.88724 0.92279 1.21551 0.93638 0.83431 1.01790 1.46120 1.07712 1.10397 1.72945 1.21232 0.81734 0.92419 0.75174 1.90626 1.56418 1.47963 1.51023 1.21834 0.97170 0.92605 1.05869 1.20883 0.92049 0.96774 0.98672 0.91737 1.20586 0.93203 1.01063 0.98063 1.22164 0.96186 0.99055 1.01106 1.22269 1.00143 0.96834 0.98679 1.20501 0.94601 0.98647 0.99072 1.21684 0.95816 0.94859 1.02741 1.42806 1.15243 1.67644 1.13232 1.18964 0.91209 1.25078 0.98369 0.91365 1.25285 0.97913 1.01530 1.00323 1.69855 1.21664 1.44692 1.27246 0.85620 0.80429 0.76305 0.80587 1.21867 1.17637 1.22940 0.92810 0.93537 0.93864 0.90356 0.92756 0.92615 0.90240 0.75331 0.86531 0.87922 0.91639 0.91766 0.88136 0.86965 0.90489 0.89505 0.89902 0.91489 0.80418 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 9.18 71.98 0.66 -4.29 16 2 C -0.13 -3.95 5.61 30.59 0.17 -3.78 16 3 C 0.17 5.59 2.59 44.99 0.12 5.71 16 4 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 5 C 0.12 3.55 5.23 86.38 0.45 4.00 16 6 N -0.72 -20.55 5.39 -463.07 -2.49 -23.05 16 7 C 0.51 14.28 7.59 87.66 0.66 14.94 16 8 O -0.58 -19.86 14.06 -3.02 -0.04 -19.90 16 9 C -0.14 -2.82 5.18 29.85 0.15 -2.67 16 10 C -0.06 -1.36 1.87 -10.65 -0.02 -1.38 16 11 H 0.06 1.55 7.94 -2.39 -0.02 1.53 16 12 C -0.09 -2.19 5.06 29.69 0.15 -2.04 16 13 C -0.17 -3.52 9.80 27.07 0.27 -3.26 16 14 C -0.16 -2.86 9.80 27.04 0.27 -2.60 16 15 C -0.09 -1.36 6.12 29.66 0.18 -1.18 16 16 C -0.11 -1.80 5.31 30.73 0.16 -1.64 16 17 N -0.75 -30.65 4.31 -322.96 -1.39 -32.04 16 18 C -0.21 -10.46 8.24 84.03 0.69 -9.76 16 19 H 0.07 3.82 7.55 -2.91 -0.02 3.79 16 20 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 21 N -0.98 -60.15 13.97 21.65 0.30 -59.84 16 22 Si 0.94 43.62 27.74 68.60 1.90 45.52 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.25 -10.41 6.52 99.48 0.65 -9.76 16 25 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 1.99 5.99 -2.38 -0.01 1.98 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.41 11.65 8.14 -92.71 -0.75 10.90 16 34 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.10 1.99 8.10 -2.38 -0.02 1.97 16 36 H 0.07 1.52 8.07 -2.39 -0.02 1.51 16 37 H 0.06 1.88 6.25 -2.39 -0.01 1.86 16 38 H 0.10 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.11 1.65 8.06 -2.91 -0.02 1.62 16 40 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.06 8.13 -2.38 -0.02 1.04 16 44 H 0.36 14.94 5.66 -92.71 -0.52 14.42 16 45 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -64.47 353.03 2.28 -62.19 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -0.38 Total: 37.86 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 4.38 Total: -10.74 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -3.58 Total: -114.93 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.04 Total: -19.90 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.90 Total: 45.52 kcal Total: -64.47 2.28 -62.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665828481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.344 kcal (2) G-P(sol) polarization free energy of solvation -64.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds