Wall clock time and date at job start Tue Mar 31 2020 01:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09005 * 109.47189 * 54.99719 * 3 2 1 5 5 C 1.52999 * 109.47197 * 175.00087 * 3 2 1 6 6 N 1.46507 * 109.47085 * 174.99896 * 5 3 2 7 7 C 1.34777 * 119.99649 * 179.97438 * 6 5 3 8 8 O 1.21276 * 119.99974 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99490 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.46926 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.64291 * 54.99415 * 10 9 7 12 12 C 1.53022 * 109.64342 * 294.58149 * 10 9 7 13 13 C 1.50160 * 110.10087 * 191.09674 * 12 10 9 14 14 C 1.29451 * 124.14371 * 16.71055 * 13 12 10 15 15 C 1.50063 * 124.07636 * 359.76371 * 14 13 12 16 16 C 1.53029 * 110.14765 * 17.12898 * 15 14 13 17 17 N 1.46506 * 109.47182 * 295.00131 * 3 2 1 18 18 C 1.36939 * 120.00073 * 84.72333 * 17 3 2 19 19 H 1.08004 * 119.99859 * 0.02562 * 18 17 3 20 20 C 1.38805 * 119.99849 * 180.02562 * 18 17 3 21 21 N 1.31625 * 120.00056 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00155 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46896 * 90.00225 * 22 20 18 24 24 H 1.48501 * 109.47275 * 210.00265 * 22 20 18 25 25 H 1.48499 * 109.47039 * 330.00065 * 22 20 18 26 26 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46810 * 300.00543 * 1 2 3 28 28 H 1.09007 * 109.47086 * 59.99509 * 1 2 3 29 29 H 1.08998 * 109.47116 * 239.99782 * 2 1 3 30 30 H 1.08996 * 109.46851 * 119.99791 * 2 1 3 31 31 H 1.08997 * 109.46838 * 294.99742 * 5 3 2 32 32 H 1.08991 * 109.47160 * 54.99850 * 5 3 2 33 33 H 0.96998 * 119.99847 * 0.02562 * 6 5 3 34 34 H 1.08997 * 109.47152 * 299.99546 * 9 7 6 35 35 H 1.08994 * 109.47051 * 60.00398 * 9 7 6 36 36 H 1.09009 * 109.35483 * 311.08742 * 12 10 9 37 37 H 1.08999 * 109.36125 * 70.66675 * 12 10 9 38 38 H 1.07998 * 117.89512 * 196.92007 * 13 12 10 39 39 H 1.07997 * 117.96187 * 179.73938 * 14 13 12 40 40 H 1.09001 * 109.36343 * 256.92663 * 15 14 13 41 41 H 1.09002 * 109.25071 * 137.26490 * 15 14 13 42 42 H 1.09001 * 109.64393 * 190.87952 * 16 15 14 43 43 H 1.09006 * 109.64054 * 70.24879 * 16 15 14 44 44 H 0.97005 * 119.99811 * 265.00126 * 17 3 2 45 45 H 0.97000 * 119.99835 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0059 7 6 5.3858 3.0628 0.0868 8 8 6.1634 2.1483 0.2592 9 6 5.8983 4.4748 -0.0359 10 6 7.4230 4.4767 0.0910 11 1 7.8526 3.7947 -0.6429 12 6 7.8225 4.0338 1.5002 13 6 9.2852 4.2874 1.7256 14 6 10.0083 5.0713 0.9917 15 6 9.4869 5.8332 -0.1913 16 6 7.9585 5.8942 -0.1470 17 7 1.6525 2.0975 -1.2518 18 6 0.4136 2.6686 -1.3708 19 1 -0.2777 2.6365 -0.5415 20 6 0.0462 3.2887 -2.5570 21 7 -1.1448 3.8373 -2.6715 22 14 1.2421 3.3449 -3.9909 23 1 1.0460 2.1468 -4.8462 24 1 0.9968 4.5707 -4.7924 25 1 2.6342 3.3617 -3.4741 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8499 1.0376 1.0960 32 1 3.9954 0.8310 -0.6659 33 1 3.4411 3.5483 -0.1309 34 1 5.6136 4.8816 -1.0062 35 1 5.4675 5.0877 0.7558 36 1 7.2439 4.5960 2.2332 37 1 7.6142 2.9703 1.6174 38 1 9.7646 3.7811 2.5503 39 1 11.0516 5.1842 1.2470 40 1 9.8021 5.3361 -1.1088 41 1 9.8896 6.8459 -0.1724 42 1 7.5793 6.2747 -1.0955 43 1 7.6413 6.5470 0.6663 44 1 2.2720 2.1231 -1.9978 45 1 -1.4013 4.2710 -3.5004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665828482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:53 Heat of formation + Delta-G solvation = -38.171997 kcal Electronic energy + Delta-G solvation = -22224.780193 eV Core-core repulsion = 19048.602294 eV Total energy + Delta-G solvation = -3176.177899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.90785 -38.28179 -36.81389 -33.76931 -32.84881 -32.33934 -30.83562 -30.29797 -28.70728 -26.82660 -23.67292 -23.19635 -22.44224 -21.25757 -20.28733 -19.72629 -18.07158 -17.71317 -16.59226 -16.17121 -15.58318 -15.55071 -14.89876 -14.40600 -14.22620 -13.98842 -13.49882 -13.27430 -13.05660 -12.97890 -12.75805 -12.66121 -12.41218 -12.37610 -12.10631 -11.64620 -11.53521 -11.15341 -11.01430 -10.77586 -10.72312 -10.64644 -10.42679 -10.32473 -10.22544 -10.02397 -9.52686 -9.49517 -9.05172 -8.99820 -8.71304 -7.37421 -5.84594 -3.20638 2.21421 2.88524 3.30627 3.35339 3.40570 3.49777 4.51748 4.55069 4.60960 4.74756 5.02497 5.09280 5.17833 5.23326 5.25578 5.31056 5.41336 5.42346 5.51749 5.60556 5.66989 5.73893 5.76627 5.77438 5.86862 5.88113 5.90223 6.05873 6.06312 6.22165 6.26695 6.35627 6.47013 6.52490 6.57381 6.57840 6.80853 6.89365 6.93187 7.27266 7.85168 7.91380 8.33735 8.50647 9.11781 9.84190 10.03765 11.33064 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019818 B = 0.003993 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.518223 B = 7011.355066 C = 8054.388590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.062 0.938 5 C 0.112 3.888 6 N -0.718 5.718 7 C 0.509 3.491 8 O -0.551 6.551 9 C -0.140 4.140 10 C -0.069 4.069 11 H 0.079 0.921 12 C -0.093 4.093 13 C -0.144 4.144 14 C -0.168 4.168 15 C -0.089 4.089 16 C -0.117 4.117 17 N -0.747 5.747 18 C -0.242 4.242 19 H 0.095 0.905 20 C 0.007 3.993 21 N -0.931 5.931 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.410 0.590 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.141 1.948 7.278 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.080 0.920 5 C -0.013 4.013 6 N -0.370 5.370 7 C 0.295 3.705 8 O -0.430 6.430 9 C -0.180 4.180 10 C -0.088 4.088 11 H 0.098 0.902 12 C -0.129 4.129 13 C -0.163 4.163 14 C -0.186 4.186 15 C -0.126 4.126 16 C -0.155 4.155 17 N -0.390 5.390 18 C -0.372 4.372 19 H 0.112 0.888 20 C -0.189 4.189 21 N -0.578 5.578 22 Si 0.711 3.289 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.204 1.204 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.246 0.754 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.437 1.393 7.447 19.012 hybrid contribution 0.435 0.347 -1.201 1.324 sum 17.872 1.740 6.246 19.012 Atomic orbital electron populations 1.21788 0.95221 0.99715 1.03777 1.22038 0.97340 0.97903 1.00083 1.20545 0.89969 0.92914 0.90716 0.92021 1.21690 0.95414 0.82895 1.01275 1.46079 1.07391 1.10677 1.72844 1.20652 0.82297 0.91301 0.76218 1.90628 1.55905 1.46710 1.49757 1.21776 0.97050 0.94645 1.04491 1.20928 0.92855 0.96733 0.98273 0.90244 1.20664 0.92889 1.03370 0.96011 1.22138 0.96416 0.98260 0.99435 1.21998 0.99311 0.99411 0.97920 1.20414 0.95545 0.99609 0.96982 1.21690 0.95154 0.96666 1.01970 1.42836 1.16653 1.67811 1.11738 1.19058 0.90424 1.27789 0.99906 0.88757 1.24657 0.96353 1.00358 0.97526 1.69694 1.19168 1.42240 1.26737 0.86625 0.81091 0.77348 0.83837 1.21187 1.21852 1.20384 0.94862 0.93890 0.89340 0.92695 0.93574 0.91583 0.92037 0.75435 0.88783 0.88908 0.91472 0.88952 0.88332 0.88410 0.91059 0.91313 0.91502 0.91659 0.80532 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.17 37.16 0.34 -2.29 16 2 C -0.13 -2.19 5.61 -26.73 -0.15 -2.34 16 3 C 0.17 2.93 2.59 -67.93 -0.18 2.76 16 4 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 5 C 0.11 1.76 5.23 -4.04 -0.02 1.74 16 6 N -0.72 -10.92 5.39 -60.29 -0.32 -11.25 16 7 C 0.51 7.57 7.59 -10.98 -0.08 7.49 16 8 O -0.55 -9.66 14.05 5.56 0.08 -9.59 16 9 C -0.14 -1.61 5.18 -27.88 -0.14 -1.75 16 10 C -0.07 -0.78 1.87 -90.41 -0.17 -0.95 16 11 H 0.08 1.04 7.94 -51.93 -0.41 0.62 16 12 C -0.09 -1.07 5.06 -28.13 -0.14 -1.21 16 13 C -0.14 -1.53 9.80 -35.86 -0.35 -1.88 16 14 C -0.17 -1.64 9.80 -35.90 -0.35 -1.99 16 15 C -0.09 -0.79 6.12 -28.18 -0.17 -0.96 16 16 C -0.12 -1.10 5.31 -26.52 -0.14 -1.24 16 17 N -0.75 -15.79 4.31 -53.42 -0.23 -16.02 16 18 C -0.24 -6.15 8.23 -15.06 -0.12 -6.27 16 19 H 0.09 2.58 7.53 -52.48 -0.40 2.19 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 21 N -0.93 -27.72 13.97 55.49 0.78 -26.95 16 22 Si 0.88 21.06 27.73 -169.99 -4.71 16.34 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.22 6.52 56.52 0.37 -5.86 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.90 5.97 -51.92 -0.31 1.59 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.41 6.22 8.14 -40.82 -0.33 5.89 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.07 0.72 8.07 -51.92 -0.42 0.30 16 37 H 0.09 1.27 6.25 -51.93 -0.32 0.94 16 38 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.10 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 44 H 0.36 7.80 5.66 -40.82 -0.23 7.57 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -29.45 352.98 -8.81 -38.26 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -7.93 Total: 12.68 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -1.78 Total: -8.80 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.22 Total: -54.22 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.71 Total: 16.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.45 -8.81 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665828482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.089 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds