Wall clock time and date at job start Tue Mar 31 2020 01:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09005 * 109.47189 * 54.99719 * 3 2 1 5 5 C 1.52999 * 109.47197 * 175.00087 * 3 2 1 6 6 N 1.46507 * 109.47085 * 174.99896 * 5 3 2 7 7 C 1.34777 * 119.99649 * 179.97438 * 6 5 3 8 8 O 1.21276 * 119.99974 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99490 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.46926 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.64291 * 54.99415 * 10 9 7 12 12 C 1.53022 * 109.64342 * 294.58149 * 10 9 7 13 13 C 1.50160 * 110.10087 * 191.09674 * 12 10 9 14 14 C 1.29451 * 124.14371 * 16.71055 * 13 12 10 15 15 C 1.50063 * 124.07636 * 359.76371 * 14 13 12 16 16 C 1.53029 * 110.14765 * 17.12898 * 15 14 13 17 17 N 1.46506 * 109.47182 * 295.00131 * 3 2 1 18 18 C 1.36939 * 120.00073 * 84.72333 * 17 3 2 19 19 H 1.08004 * 119.99859 * 0.02562 * 18 17 3 20 20 C 1.38805 * 119.99849 * 180.02562 * 18 17 3 21 21 N 1.31625 * 120.00056 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00155 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46896 * 90.00225 * 22 20 18 24 24 H 1.48501 * 109.47275 * 210.00265 * 22 20 18 25 25 H 1.48499 * 109.47039 * 330.00065 * 22 20 18 26 26 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46810 * 300.00543 * 1 2 3 28 28 H 1.09007 * 109.47086 * 59.99509 * 1 2 3 29 29 H 1.08998 * 109.47116 * 239.99782 * 2 1 3 30 30 H 1.08996 * 109.46851 * 119.99791 * 2 1 3 31 31 H 1.08997 * 109.46838 * 294.99742 * 5 3 2 32 32 H 1.08991 * 109.47160 * 54.99850 * 5 3 2 33 33 H 0.96998 * 119.99847 * 0.02562 * 6 5 3 34 34 H 1.08997 * 109.47152 * 299.99546 * 9 7 6 35 35 H 1.08994 * 109.47051 * 60.00398 * 9 7 6 36 36 H 1.09009 * 109.35483 * 311.08742 * 12 10 9 37 37 H 1.08999 * 109.36125 * 70.66675 * 12 10 9 38 38 H 1.07998 * 117.89512 * 196.92007 * 13 12 10 39 39 H 1.07997 * 117.96187 * 179.73938 * 14 13 12 40 40 H 1.09001 * 109.36343 * 256.92663 * 15 14 13 41 41 H 1.09002 * 109.25071 * 137.26490 * 15 14 13 42 42 H 1.09001 * 109.64393 * 190.87952 * 16 15 14 43 43 H 1.09006 * 109.64054 * 70.24879 * 16 15 14 44 44 H 0.97005 * 119.99811 * 265.00126 * 17 3 2 45 45 H 0.97000 * 119.99835 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0059 7 6 5.3858 3.0628 0.0868 8 8 6.1634 2.1483 0.2592 9 6 5.8983 4.4748 -0.0359 10 6 7.4230 4.4767 0.0910 11 1 7.8526 3.7947 -0.6429 12 6 7.8225 4.0338 1.5002 13 6 9.2852 4.2874 1.7256 14 6 10.0083 5.0713 0.9917 15 6 9.4869 5.8332 -0.1913 16 6 7.9585 5.8942 -0.1470 17 7 1.6525 2.0975 -1.2518 18 6 0.4136 2.6686 -1.3708 19 1 -0.2777 2.6365 -0.5415 20 6 0.0462 3.2887 -2.5570 21 7 -1.1448 3.8373 -2.6715 22 14 1.2421 3.3449 -3.9909 23 1 1.0460 2.1468 -4.8462 24 1 0.9968 4.5707 -4.7924 25 1 2.6342 3.3617 -3.4741 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8499 1.0376 1.0960 32 1 3.9954 0.8310 -0.6659 33 1 3.4411 3.5483 -0.1309 34 1 5.6136 4.8816 -1.0062 35 1 5.4675 5.0877 0.7558 36 1 7.2439 4.5960 2.2332 37 1 7.6142 2.9703 1.6174 38 1 9.7646 3.7811 2.5503 39 1 11.0516 5.1842 1.2470 40 1 9.8021 5.3361 -1.1088 41 1 9.8896 6.8459 -0.1724 42 1 7.5793 6.2747 -1.0955 43 1 7.6413 6.5470 0.6663 44 1 2.2720 2.1231 -1.9978 45 1 -1.4013 4.2710 -3.5004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665828482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:52 Heat of formation + Delta-G solvation = -55.791580 kcal Electronic energy + Delta-G solvation = -22225.544235 eV Core-core repulsion = 19048.602294 eV Total energy + Delta-G solvation = -3176.941941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.01677 -39.25588 -38.26190 -35.21628 -34.16699 -33.67627 -32.07586 -31.59282 -30.01977 -27.93637 -25.26400 -24.22391 -23.78362 -22.20725 -21.74131 -20.96402 -19.59169 -18.84716 -17.79269 -17.15866 -17.06311 -16.61606 -16.22916 -15.87870 -15.41642 -15.03148 -14.75996 -14.65020 -14.47865 -14.41100 -14.01883 -13.77616 -13.52360 -13.18772 -13.09808 -12.96990 -12.86883 -12.83638 -12.42662 -12.30617 -12.10820 -11.88410 -11.62792 -11.58441 -11.49669 -11.41222 -11.01142 -10.96717 -10.61718 -9.98841 -9.80374 -9.28637 -7.94586 -5.26826 1.40157 1.43084 1.44630 1.49444 1.72829 2.34055 2.52817 3.37322 3.58762 3.71953 3.79297 3.87799 3.91714 4.15016 4.27610 4.33657 4.42852 4.45777 4.49913 4.55324 4.58899 4.71571 4.76587 4.79598 4.82785 4.83505 4.96710 5.05480 5.07821 5.10189 5.13964 5.19463 5.25247 5.39292 5.48030 5.51322 5.59312 5.72184 5.81590 5.88040 6.11240 6.28034 6.65238 7.13992 7.32830 7.88589 8.07485 9.26488 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019818 B = 0.003993 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.518223 B = 7011.355066 C = 8054.388590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.169 3.831 4 H 0.059 0.941 5 C 0.121 3.879 6 N -0.720 5.720 7 C 0.506 3.494 8 O -0.580 6.580 9 C -0.135 4.135 10 C -0.067 4.067 11 H 0.058 0.942 12 C -0.089 4.089 13 C -0.165 4.165 14 C -0.164 4.164 15 C -0.092 4.092 16 C -0.114 4.114 17 N -0.746 5.746 18 C -0.205 4.205 19 H 0.068 0.932 20 C -0.060 4.060 21 N -0.983 5.983 22 Si 0.942 3.058 23 H -0.291 1.291 24 H -0.302 1.302 25 H -0.251 1.251 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.411 0.589 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.363 0.637 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.319 2.188 7.713 20.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.077 0.923 5 C -0.004 4.004 6 N -0.372 5.372 7 C 0.295 3.705 8 O -0.460 6.460 9 C -0.175 4.175 10 C -0.086 4.086 11 H 0.076 0.924 12 C -0.126 4.126 13 C -0.183 4.183 14 C -0.182 4.182 15 C -0.129 4.129 16 C -0.151 4.151 17 N -0.389 5.389 18 C -0.336 4.336 19 H 0.086 0.914 20 C -0.251 4.251 21 N -0.635 5.635 22 Si 0.771 3.229 23 H -0.219 1.219 24 H -0.229 1.229 25 H -0.176 1.176 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.196 0.804 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.664 1.607 7.918 21.259 hybrid contribution -0.235 0.188 -1.210 1.246 sum 19.430 1.795 6.708 20.633 Atomic orbital electron populations 1.21699 0.96362 1.00425 1.01619 1.21971 0.96133 0.97173 1.01633 1.20681 0.91321 0.93184 0.88728 0.92295 1.21548 0.93619 0.83429 1.01796 1.46119 1.07710 1.10397 1.72938 1.21226 0.81743 0.92400 0.75178 1.90625 1.56465 1.47965 1.50971 1.21829 0.97161 0.92590 1.05870 1.20885 0.92625 0.97631 0.97417 0.92388 1.20572 0.93867 1.01739 0.96452 1.22191 0.96108 0.99480 1.00499 1.22245 0.99924 0.98481 0.97506 1.20494 0.95298 1.00520 0.96597 1.21680 0.95436 0.95213 1.02771 1.42813 1.15091 1.67804 1.13222 1.18962 0.91040 1.25225 0.98390 0.91387 1.25298 0.97922 1.01555 1.00360 1.69858 1.21558 1.44817 1.27252 0.85607 0.80418 0.76318 0.80520 1.21857 1.22928 1.17601 0.92814 0.93883 0.93513 0.92747 0.90363 0.90233 0.92607 0.75326 0.87582 0.86887 0.90896 0.91612 0.87868 0.87016 0.90960 0.89523 0.90492 0.90938 0.80409 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 9.17 71.98 0.66 -4.30 16 2 C -0.13 -3.95 5.61 30.59 0.17 -3.78 16 3 C 0.17 5.59 2.59 44.99 0.12 5.71 16 4 H 0.06 2.02 8.08 -2.38 -0.02 2.00 16 5 C 0.12 3.55 5.23 86.38 0.45 4.00 16 6 N -0.72 -20.51 5.39 -463.06 -2.50 -23.01 16 7 C 0.51 14.26 7.59 87.66 0.67 14.92 16 8 O -0.58 -19.82 14.05 -3.02 -0.04 -19.87 16 9 C -0.13 -2.81 5.18 29.85 0.15 -2.66 16 10 C -0.07 -1.40 1.87 -10.66 -0.02 -1.42 16 11 H 0.06 1.47 7.94 -2.39 -0.02 1.45 16 12 C -0.09 -1.98 5.06 29.69 0.15 -1.83 16 13 C -0.16 -3.29 9.80 27.06 0.27 -3.02 16 14 C -0.16 -2.84 9.80 27.03 0.26 -2.58 16 15 C -0.09 -1.41 6.12 29.66 0.18 -1.23 16 16 C -0.11 -1.83 5.31 30.73 0.16 -1.67 16 17 N -0.75 -30.62 4.31 -322.93 -1.39 -32.01 16 18 C -0.21 -10.45 8.23 84.03 0.69 -9.76 16 19 H 0.07 3.81 7.53 -2.91 -0.02 3.78 16 20 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 21 N -0.98 -60.15 13.97 21.65 0.30 -59.85 16 22 Si 0.94 43.51 27.73 68.60 1.90 45.42 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.25 -10.35 6.52 99.48 0.65 -9.70 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 2.00 5.97 -2.38 -0.01 1.99 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.41 11.63 8.14 -92.71 -0.75 10.88 16 34 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.11 1.92 8.10 -2.39 -0.02 1.90 16 36 H 0.07 1.47 8.07 -2.38 -0.02 1.45 16 37 H 0.07 1.81 6.25 -2.39 -0.01 1.79 16 38 H 0.10 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.11 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.08 8.13 -2.38 -0.02 1.06 16 44 H 0.36 14.91 5.66 -92.70 -0.52 14.39 16 45 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -64.32 352.98 2.28 -62.04 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: -0.38 Total: 37.75 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 4.38 Total: -10.47 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -3.59 Total: -114.87 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.04 Total: -19.87 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.90 Total: 45.42 kcal Total: -64.32 2.28 -62.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665828482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.250 kcal (2) G-P(sol) polarization free energy of solvation -64.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds