Wall clock time and date at job start Tue Mar 31 2020 01:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99860 * 2 1 4 4 H 1.08991 * 109.47198 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47154 * 120.00112 * 3 2 1 6 6 C 1.53004 * 109.46784 * 294.75176 * 5 3 2 7 7 C 1.53006 * 109.46694 * 239.99866 * 3 2 1 8 8 C 1.50696 * 109.47066 * 174.01652 * 7 3 2 9 9 O 1.21281 * 120.00278 * 353.87259 * 8 7 3 10 10 N 1.34782 * 119.99910 * 173.87300 * 8 7 3 11 11 C 1.46503 * 119.99960 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.46908 * 180.02562 * 11 10 8 13 13 H 1.09005 * 109.47008 * 294.99560 * 12 11 10 14 14 N 1.46492 * 109.47479 * 54.99998 * 12 11 10 15 15 C 1.36936 * 120.00245 * 204.99883 * 14 12 11 16 16 H 1.08003 * 119.99953 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00567 * 179.97438 * 15 14 12 18 18 N 1.31627 * 119.99562 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00500 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47003 * 89.99744 * 19 17 15 21 21 H 1.48501 * 109.47074 * 210.00001 * 19 17 15 22 22 H 1.48505 * 109.46974 * 329.99978 * 19 17 15 23 23 C 1.53004 * 109.47037 * 175.00243 * 12 11 10 24 24 C 1.52999 * 117.49608 * 248.74508 * 23 12 11 25 25 C 1.52991 * 117.50024 * 180.08762 * 23 12 11 26 26 H 1.07995 * 120.00147 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00029 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99582 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47235 * 174.75294 * 5 3 2 30 30 H 1.08996 * 109.47080 * 54.75480 * 5 3 2 31 31 H 1.08996 * 109.47071 * 55.26812 * 6 5 3 32 32 H 1.08997 * 109.46930 * 295.26000 * 6 5 3 33 33 H 1.08999 * 109.46549 * 175.26513 * 6 5 3 34 34 H 1.09003 * 109.46812 * 294.01782 * 7 3 2 35 35 H 1.08999 * 109.47124 * 54.01168 * 7 3 2 36 36 H 0.97003 * 119.99829 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47201 * 300.00083 * 11 10 8 38 38 H 1.09003 * 109.46907 * 59.99872 * 11 10 8 39 39 H 0.97006 * 120.00167 * 24.99692 * 14 12 11 40 40 H 0.96996 * 119.99624 * 179.97438 * 18 17 15 41 41 H 1.09000 * 115.55024 * 34.41253 * 23 12 11 42 42 H 1.09001 * 117.49862 * 0.02562 * 24 23 12 43 43 H 1.09009 * 117.49750 * 145.01875 * 24 23 12 44 44 H 1.09003 * 117.50052 * 214.97987 * 25 23 12 45 45 H 1.08998 * 117.50361 * 359.97078 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0563 1.4370 2.4950 7 6 2.9431 1.3861 -1.2493 8 6 3.5830 2.7483 -1.3257 9 8 3.2731 3.6094 -0.5299 10 7 4.4998 3.0097 -2.2784 11 6 5.1215 4.3342 -2.3530 12 6 6.1170 4.3656 -3.5144 13 1 6.9348 3.6743 -3.3107 14 7 5.4382 3.9685 -4.7504 15 6 6.1574 3.4305 -5.7840 16 1 7.2250 3.2986 -5.6880 17 6 5.5142 3.0537 -6.9550 18 7 4.2128 3.2131 -7.0716 19 14 6.4951 2.3192 -8.3648 20 1 6.5500 0.8429 -8.2133 21 1 5.8411 2.6606 -9.6536 22 1 7.8741 2.8701 -8.3482 23 6 6.6737 5.7821 -3.6708 24 6 6.2670 6.5671 -4.9195 25 6 7.6912 6.0220 -4.7878 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 3.5572 2.2856 1.2035 30 1 3.5875 0.5084 1.2974 31 1 1.3831 0.5797 2.4968 32 1 1.4726 2.3575 2.4881 33 1 2.6815 1.4099 3.3873 34 1 3.7192 0.6225 -1.1973 35 1 2.3309 1.2220 -2.1360 36 1 4.7474 2.3211 -2.9152 37 1 4.3514 5.0885 -2.5146 38 1 5.6446 4.5431 -1.4198 39 1 4.4792 4.0866 -4.8366 40 1 3.7634 2.9502 -7.8899 41 1 6.8023 6.3417 -2.7442 42 1 5.6024 6.0746 -5.6293 43 1 6.1283 7.6433 -4.8145 44 1 8.4891 6.7396 -4.5964 45 1 7.9644 5.1706 -5.4111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690165023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:22 Heat of formation + Delta-G solvation = -0.502696 kcal Electronic energy + Delta-G solvation = -22197.741297 eV Core-core repulsion = 19023.196862 eV Total energy + Delta-G solvation = -3174.544435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.62927 -37.76515 -36.62474 -34.39541 -33.24549 -31.81452 -31.13492 -30.14253 -28.02160 -24.82463 -23.53012 -22.47506 -21.75236 -21.45427 -20.01699 -19.60157 -18.98137 -17.36828 -16.57901 -15.70700 -15.42487 -15.02924 -14.76236 -14.61762 -14.55165 -13.97546 -13.72761 -13.45508 -13.07237 -12.99681 -12.65334 -12.54183 -12.02946 -11.82074 -11.31893 -11.19258 -11.17950 -11.08338 -10.90915 -10.85713 -10.67957 -10.54061 -10.52970 -10.13952 -9.71101 -9.58030 -9.46084 -9.31056 -9.14353 -8.99616 -8.56331 -7.08851 -5.85976 -3.16053 2.22713 3.01925 3.36756 3.43467 3.44694 3.65178 4.48104 4.62596 4.75797 4.77587 5.09592 5.20691 5.28721 5.31680 5.38426 5.45225 5.49325 5.58114 5.58521 5.73065 5.77227 5.80544 5.84771 5.93174 5.97841 6.03015 6.06066 6.08429 6.10427 6.31845 6.37943 6.39120 6.47439 6.58141 6.65055 6.75409 6.76893 6.93659 7.01719 7.26891 7.63402 7.99611 8.31284 8.64061 9.43626 9.97642 10.33880 11.35483 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.004091 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.549364 B = 6842.976842 C = 8046.980376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 C -0.046 4.046 4 H 0.083 0.917 5 C -0.118 4.118 6 C -0.148 4.148 7 C -0.135 4.135 8 C 0.511 3.489 9 O -0.554 6.554 10 N -0.714 5.714 11 C 0.120 3.880 12 C 0.192 3.808 13 H 0.056 0.944 14 N -0.717 5.717 15 C -0.240 4.240 16 H 0.071 0.929 17 C -0.008 4.008 18 N -0.928 5.928 19 Si 0.903 3.097 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.178 4.178 24 C -0.163 4.163 25 C -0.176 4.176 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.410 0.590 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 -3.740 13.291 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.160 4.160 3 C -0.064 4.064 4 H 0.101 0.899 5 C -0.156 4.156 6 C -0.205 4.205 7 C -0.175 4.175 8 C 0.297 3.703 9 O -0.433 6.433 10 N -0.365 5.365 11 C -0.005 4.005 12 C 0.081 3.919 13 H 0.074 0.926 14 N -0.359 5.359 15 C -0.371 4.371 16 H 0.089 0.911 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.734 3.266 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.199 4.199 24 C -0.200 4.200 25 C -0.213 4.213 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.246 0.754 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.221 0.779 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.914 -3.201 13.715 14.213 hybrid contribution 0.371 -0.615 -1.344 1.524 sum -1.543 -3.816 12.371 13.038 Atomic orbital electron populations 1.23841 0.95975 1.01691 1.01697 1.22950 0.95927 0.98098 0.99066 1.20151 0.97003 0.95579 0.93713 0.89856 1.21591 0.98000 1.02486 0.93500 1.21737 0.99775 1.01650 0.97359 1.21682 1.00310 0.95327 1.00205 1.20572 0.79236 0.89910 0.80581 1.90640 1.62859 1.48371 1.41446 1.46031 1.41802 1.15697 1.32990 1.21545 0.96359 0.84251 0.98353 1.19991 0.93173 0.92257 0.86474 0.92590 1.42467 1.07727 1.73842 1.11835 1.19168 0.91779 1.33098 0.93066 0.91082 1.24707 0.95620 1.01944 0.98147 1.69660 1.07272 1.53220 1.27439 0.86268 0.79070 0.78937 0.82357 1.21784 1.21865 1.20775 1.23073 1.04873 0.99474 0.92514 1.22909 0.98705 0.97143 1.01245 1.22846 0.92082 1.03392 1.02939 0.88691 0.88602 0.87491 0.90284 0.92635 0.92922 0.92816 0.93237 0.89167 0.88549 0.75400 0.91844 0.92021 0.77933 0.93455 0.89669 0.86358 0.91312 0.91049 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.89 14.32 29.01 0.42 -1.48 16 2 C -0.14 -1.45 7.69 -36.03 -0.28 -1.73 16 3 C -0.05 -0.54 1.79 -91.77 -0.16 -0.71 16 4 H 0.08 1.13 7.47 -51.93 -0.39 0.74 16 5 C -0.12 -1.38 5.20 -26.73 -0.14 -1.52 16 6 C -0.15 -1.55 9.80 37.16 0.36 -1.18 16 7 C -0.14 -1.69 5.15 -27.88 -0.14 -1.83 16 8 C 0.51 8.06 7.38 -10.99 -0.08 7.98 16 9 O -0.55 -10.22 14.31 5.56 0.08 -10.14 16 10 N -0.71 -11.49 5.39 -60.29 -0.32 -11.81 16 11 C 0.12 2.01 5.22 -4.04 -0.02 1.99 16 12 C 0.19 3.49 2.86 -67.94 -0.19 3.29 16 13 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 14 N -0.72 -15.74 3.08 -53.43 -0.16 -15.91 16 15 C -0.24 -5.92 8.15 -15.06 -0.12 -6.04 16 16 H 0.07 1.74 6.91 -52.48 -0.36 1.37 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.93 -26.04 13.06 55.49 0.72 -25.32 16 19 Si 0.90 21.15 29.55 -169.99 -5.02 16.13 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.18 -3.09 5.71 -90.62 -0.52 -3.60 16 24 C -0.16 -3.05 9.74 -26.70 -0.26 -3.31 16 25 C -0.18 -3.13 9.87 -26.70 -0.26 -3.39 16 26 H 0.09 0.79 8.06 -52.49 -0.42 0.36 16 27 H 0.10 0.94 7.83 -52.48 -0.41 0.53 16 28 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.08 1.10 6.19 -51.93 -0.32 0.78 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.51 7.24 -51.93 -0.38 0.13 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.41 6.65 8.14 -40.82 -0.33 6.32 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.39 9.37 7.80 -40.82 -0.32 9.05 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 42 H 0.12 2.65 6.68 -51.93 -0.35 2.30 16 43 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.10 2.04 6.22 -51.93 -0.32 1.72 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -27.50 363.46 -8.54 -36.04 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -7.81 Total: 17.36 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -1.50 Total: -11.83 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.24 Total: -53.03 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.50 -8.54 -36.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690165023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.534 kcal (2) G-P(sol) polarization free energy of solvation -27.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds