Wall clock time and date at job start Tue Mar 31 2020 01:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99860 * 2 1 4 4 H 1.08991 * 109.47198 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47154 * 120.00112 * 3 2 1 6 6 C 1.53004 * 109.46784 * 294.75176 * 5 3 2 7 7 C 1.53006 * 109.46694 * 239.99866 * 3 2 1 8 8 C 1.50696 * 109.47066 * 174.01652 * 7 3 2 9 9 O 1.21281 * 120.00278 * 353.87259 * 8 7 3 10 10 N 1.34782 * 119.99910 * 173.87300 * 8 7 3 11 11 C 1.46503 * 119.99960 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.46908 * 180.02562 * 11 10 8 13 13 H 1.09005 * 109.47008 * 294.99560 * 12 11 10 14 14 N 1.46492 * 109.47479 * 54.99998 * 12 11 10 15 15 C 1.36936 * 120.00245 * 204.99883 * 14 12 11 16 16 H 1.08003 * 119.99953 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00567 * 179.97438 * 15 14 12 18 18 N 1.31627 * 119.99562 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00500 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47003 * 89.99744 * 19 17 15 21 21 H 1.48501 * 109.47074 * 210.00001 * 19 17 15 22 22 H 1.48505 * 109.46974 * 329.99978 * 19 17 15 23 23 C 1.53004 * 109.47037 * 175.00243 * 12 11 10 24 24 C 1.52999 * 117.49608 * 248.74508 * 23 12 11 25 25 C 1.52991 * 117.50024 * 180.08762 * 23 12 11 26 26 H 1.07995 * 120.00147 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00029 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.99582 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47235 * 174.75294 * 5 3 2 30 30 H 1.08996 * 109.47080 * 54.75480 * 5 3 2 31 31 H 1.08996 * 109.47071 * 55.26812 * 6 5 3 32 32 H 1.08997 * 109.46930 * 295.26000 * 6 5 3 33 33 H 1.08999 * 109.46549 * 175.26513 * 6 5 3 34 34 H 1.09003 * 109.46812 * 294.01782 * 7 3 2 35 35 H 1.08999 * 109.47124 * 54.01168 * 7 3 2 36 36 H 0.97003 * 119.99829 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47201 * 300.00083 * 11 10 8 38 38 H 1.09003 * 109.46907 * 59.99872 * 11 10 8 39 39 H 0.97006 * 120.00167 * 24.99692 * 14 12 11 40 40 H 0.96996 * 119.99624 * 179.97438 * 18 17 15 41 41 H 1.09000 * 115.55024 * 34.41253 * 23 12 11 42 42 H 1.09001 * 117.49862 * 0.02562 * 24 23 12 43 43 H 1.09009 * 117.49750 * 145.01875 * 24 23 12 44 44 H 1.09003 * 117.50052 * 214.97987 * 25 23 12 45 45 H 1.08998 * 117.50361 * 359.97078 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1335 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0563 1.4370 2.4950 7 6 2.9431 1.3861 -1.2493 8 6 3.5830 2.7483 -1.3257 9 8 3.2731 3.6094 -0.5299 10 7 4.4998 3.0097 -2.2784 11 6 5.1215 4.3342 -2.3530 12 6 6.1170 4.3656 -3.5144 13 1 6.9348 3.6743 -3.3107 14 7 5.4382 3.9685 -4.7504 15 6 6.1574 3.4305 -5.7840 16 1 7.2250 3.2986 -5.6880 17 6 5.5142 3.0537 -6.9550 18 7 4.2128 3.2131 -7.0716 19 14 6.4951 2.3192 -8.3648 20 1 6.5500 0.8429 -8.2133 21 1 5.8411 2.6606 -9.6536 22 1 7.8741 2.8701 -8.3482 23 6 6.6737 5.7821 -3.6708 24 6 6.2670 6.5671 -4.9195 25 6 7.6912 6.0220 -4.7878 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 3.5572 2.2856 1.2035 30 1 3.5875 0.5084 1.2974 31 1 1.3831 0.5797 2.4968 32 1 1.4726 2.3575 2.4881 33 1 2.6815 1.4099 3.3873 34 1 3.7192 0.6225 -1.1973 35 1 2.3309 1.2220 -2.1360 36 1 4.7474 2.3211 -2.9152 37 1 4.3514 5.0885 -2.5146 38 1 5.6446 4.5431 -1.4198 39 1 4.4792 4.0866 -4.8366 40 1 3.7634 2.9502 -7.8899 41 1 6.8023 6.3417 -2.7442 42 1 5.6024 6.0746 -5.6293 43 1 6.1283 7.6433 -4.8145 44 1 8.4891 6.7396 -4.5964 45 1 7.9644 5.1706 -5.4111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690165023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:21 Heat of formation + Delta-G solvation = -15.304211 kcal Electronic energy + Delta-G solvation = -22198.383139 eV Core-core repulsion = 19023.196862 eV Total energy + Delta-G solvation = -3175.186277 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89814 -39.23491 -37.64724 -35.81305 -35.02372 -32.71045 -32.63199 -31.38216 -29.55265 -26.05773 -25.23602 -23.81652 -22.97966 -22.61834 -21.32502 -20.50938 -20.41093 -19.20577 -17.87527 -17.05078 -16.80750 -16.33804 -16.27765 -15.81030 -15.58119 -15.33645 -15.27528 -14.69555 -14.48942 -14.23307 -13.94368 -13.55598 -13.40394 -12.89226 -12.85227 -12.76538 -12.62949 -12.56757 -12.12321 -12.07999 -12.00137 -11.94729 -11.61439 -11.58539 -11.46585 -11.03028 -10.94901 -10.67117 -10.59137 -10.17297 -9.92092 -8.98039 -7.87420 -5.14855 1.44238 1.49917 1.52121 1.58214 1.75378 2.40033 2.59646 3.14219 3.47628 3.77146 3.83642 3.90394 4.01083 4.15072 4.23010 4.31043 4.34602 4.42125 4.45150 4.51328 4.57911 4.60524 4.66434 4.69847 4.85556 4.96259 4.96809 4.99022 5.07311 5.12290 5.19287 5.21647 5.27745 5.42686 5.45202 5.47411 5.62657 5.67468 5.68633 5.79014 5.97770 6.32675 6.68949 7.35495 7.41241 8.12033 8.37610 9.34965 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.004091 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.549364 B = 6842.976842 C = 8046.980376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.148 4.148 3 C -0.042 4.042 4 H 0.060 0.940 5 C -0.116 4.116 6 C -0.145 4.145 7 C -0.130 4.130 8 C 0.508 3.492 9 O -0.582 6.582 10 N -0.714 5.714 11 C 0.129 3.871 12 C 0.193 3.807 13 H 0.060 0.940 14 N -0.719 5.719 15 C -0.219 4.219 16 H 0.076 0.924 17 C -0.065 4.065 18 N -0.964 5.964 19 Si 0.956 3.044 20 H -0.289 1.289 21 H -0.305 1.305 22 H -0.274 1.274 23 C -0.169 4.169 24 C -0.174 4.174 25 C -0.169 4.169 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.125 0.875 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.410 0.590 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.374 0.626 40 H 0.247 0.753 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 -4.518 14.564 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.165 4.165 3 C -0.061 4.061 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.202 4.202 7 C -0.169 4.169 8 C 0.296 3.704 9 O -0.464 6.464 10 N -0.365 5.365 11 C 0.004 3.996 12 C 0.084 3.916 13 H 0.078 0.922 14 N -0.359 5.359 15 C -0.350 4.350 16 H 0.094 0.906 17 C -0.258 4.258 18 N -0.615 5.615 19 Si 0.788 3.212 20 H -0.217 1.217 21 H -0.233 1.233 22 H -0.199 1.199 23 C -0.190 4.190 24 C -0.211 4.211 25 C -0.206 4.206 26 H 0.131 0.869 27 H 0.107 0.893 28 H 0.143 0.857 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.246 0.754 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.206 0.794 40 H 0.056 0.944 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.734 -3.978 15.018 15.553 hybrid contribution 0.037 -0.313 -1.663 1.693 sum -0.697 -4.291 13.355 14.045 Atomic orbital electron populations 1.23998 0.95990 1.02281 1.00725 1.22935 0.96048 0.97670 0.99896 1.20083 0.96588 0.95921 0.93525 0.92202 1.21548 0.98032 1.01856 0.93929 1.21707 0.99774 1.01486 0.97228 1.21717 1.00841 0.93702 1.00675 1.21148 0.78659 0.90876 0.79725 1.90629 1.63646 1.49602 1.42474 1.46051 1.42009 1.15364 1.33101 1.21399 0.95574 0.84368 0.98237 1.20121 0.93297 0.92925 0.85280 0.92164 1.42513 1.07072 1.73724 1.12622 1.19421 0.91942 1.30491 0.93173 0.90614 1.25293 0.96290 1.03805 1.00400 1.69800 1.08641 1.55598 1.27489 0.85390 0.78133 0.78192 0.79527 1.21678 1.23273 1.19879 1.23070 1.04013 0.98640 0.93288 1.22769 0.98818 0.98198 1.01329 1.22833 0.92339 1.03059 1.02401 0.86886 0.89300 0.85739 0.92847 0.91092 0.91914 0.93975 0.92255 0.86861 0.88334 0.75380 0.93501 0.90499 0.79395 0.94435 0.86825 0.90439 0.89200 0.88085 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.41 14.32 67.78 0.97 -2.44 16 2 C -0.15 -2.73 7.69 25.64 0.20 -2.53 16 3 C -0.04 -0.97 1.79 -11.54 -0.02 -0.99 16 4 H 0.06 1.64 7.47 -2.39 -0.02 1.63 16 5 C -0.12 -2.59 5.20 30.59 0.16 -2.43 16 6 C -0.14 -2.86 9.80 71.98 0.71 -2.16 16 7 C -0.13 -3.11 5.15 29.85 0.15 -2.95 16 8 C 0.51 15.86 7.38 87.65 0.65 16.51 16 9 O -0.58 -21.62 14.31 -3.03 -0.04 -21.66 16 10 N -0.71 -22.59 5.39 -463.06 -2.50 -25.09 16 11 C 0.13 4.21 5.22 86.38 0.45 4.66 16 12 C 0.19 6.79 2.86 44.99 0.13 6.92 16 13 H 0.06 2.11 8.08 -2.38 -0.02 2.09 16 14 N -0.72 -31.61 3.08 -322.95 -0.99 -32.60 16 15 C -0.22 -10.73 8.15 84.03 0.69 -10.04 16 16 H 0.08 3.63 6.91 -2.91 -0.02 3.60 16 17 C -0.07 -3.46 5.50 84.86 0.47 -2.99 16 18 N -0.96 -55.35 13.06 21.65 0.28 -55.06 16 19 Si 0.96 43.82 29.55 68.60 2.03 45.85 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C -0.17 -5.52 5.71 -10.80 -0.06 -5.58 16 24 C -0.17 -6.33 9.74 30.62 0.30 -6.03 16 25 C -0.17 -5.68 9.87 30.61 0.30 -5.38 16 26 H 0.11 1.59 8.06 -2.91 -0.02 1.57 16 27 H 0.09 1.68 7.83 -2.91 -0.02 1.66 16 28 H 0.12 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.05 1.47 6.19 -2.39 -0.01 1.46 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.11 7.24 -2.39 -0.02 1.09 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.41 13.04 8.14 -92.71 -0.75 12.29 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.37 18.47 7.80 -92.70 -0.72 17.75 16 40 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 41 H 0.11 3.14 8.11 -2.39 -0.02 3.12 16 42 H 0.08 3.52 6.68 -2.39 -0.02 3.50 16 43 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 44 H 0.10 2.80 8.14 -2.39 -0.02 2.79 16 45 H 0.08 3.03 6.22 -2.39 -0.01 3.02 16 Total: -1.00 -59.56 363.46 3.35 -56.21 By element: Atomic # 1 Polarization: 48.29 SS G_CDS: -0.51 Total: 47.78 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 5.08 Total: -15.43 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -3.21 Total: -112.76 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.04 Total: -21.66 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -59.56 3.35 -56.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690165023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.910 kcal (2) G-P(sol) polarization free energy of solvation -59.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds