Wall clock time and date at job start Tue Mar 31 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47287 * 2 1 4 4 N 1.46502 * 109.46953 * 180.02562 * 3 2 1 5 5 C 1.36948 * 119.99714 * 275.30370 * 4 3 2 6 6 H 1.07997 * 119.99400 * 37.58208 * 5 4 3 7 7 C 1.38814 * 119.99946 * 217.57684 * 5 4 3 8 8 N 1.31613 * 119.99902 * 21.43685 * 7 5 4 9 9 Si 1.86798 * 119.99611 * 201.43148 * 7 5 4 10 10 H 1.48497 * 109.47386 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46712 * 120.00089 * 9 7 5 12 12 H 1.48495 * 109.47431 * 240.00145 * 9 7 5 13 13 C 1.46498 * 120.00322 * 95.30920 * 4 3 2 14 14 C 1.53000 * 109.47080 * 269.99447 * 13 4 3 15 15 N 1.46498 * 109.47080 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99689 * 179.73142 * 15 14 13 17 17 O 1.21617 * 120.00674 * 359.97438 * 16 15 14 18 18 C 1.47107 * 119.99969 * 179.97438 * 16 15 14 19 19 C 1.50697 * 119.99853 * 359.97438 * 18 16 15 20 20 C 1.32994 * 120.00122 * 179.97438 * 18 16 15 21 21 C 1.51403 * 136.31592 * 359.63141 * 20 18 16 22 22 C 1.53375 * 87.51790 * 206.05407 * 21 20 18 23 23 C 1.51403 * 136.31542 * 179.97438 * 20 18 16 24 24 H 1.09003 * 109.46899 * 300.00142 * 1 2 3 25 25 H 1.09001 * 109.47348 * 59.99654 * 1 2 3 26 26 H 1.08992 * 109.47617 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46866 * 239.99566 * 2 1 3 28 28 H 1.09008 * 109.47030 * 120.00115 * 2 1 3 29 29 H 1.08995 * 109.47522 * 59.99967 * 3 2 1 30 30 H 1.09001 * 109.47345 * 299.99656 * 3 2 1 31 31 H 0.97002 * 119.99878 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47255 * 150.00085 * 13 4 3 33 33 H 1.08999 * 109.47047 * 30.00096 * 13 4 3 34 34 H 1.09007 * 109.46555 * 60.00209 * 14 13 4 35 35 H 1.09004 * 109.47429 * 300.00639 * 14 13 4 36 36 H 0.96995 * 120.00416 * 0.02562 * 15 14 13 37 37 H 1.09004 * 109.46902 * 90.00066 * 19 18 16 38 38 H 1.09001 * 109.47385 * 209.99759 * 19 18 16 39 39 H 1.09000 * 109.47150 * 330.00473 * 19 18 16 40 40 H 1.08996 * 113.56404 * 320.64031 * 21 20 18 41 41 H 1.09001 * 113.55912 * 91.36852 * 21 20 18 42 42 H 1.09001 * 113.97030 * 220.29116 * 22 21 20 43 43 H 1.08995 * 113.59850 * 88.79830 * 22 21 20 44 44 H 1.08997 * 113.56486 * 268.63139 * 23 20 18 45 45 H 1.08998 * 113.56242 * 39.36848 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.3325 1.1800 6 1 3.8184 0.6869 1.9619 7 6 5.3624 2.0509 1.3716 8 7 5.6026 3.1236 0.6480 9 14 6.5989 1.4949 2.6567 10 1 6.0967 0.2702 3.3297 11 1 7.8977 1.2008 1.9992 12 1 6.7858 2.5715 3.6622 13 6 4.2370 1.5599 -1.2641 14 6 4.4919 0.1645 -1.8376 15 7 5.2244 0.2820 -3.1008 16 6 5.5659 -0.8263 -3.7873 17 8 5.2664 -1.9241 -3.3580 18 6 6.3011 -0.7084 -5.0561 19 6 6.6717 0.6518 -5.5884 20 6 6.6385 -1.8021 -5.7332 21 6 6.4720 -3.2962 -5.5534 22 6 7.7284 -3.4727 -6.4152 23 6 7.3662 -2.1092 -7.0250 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 6.4216 3.6258 0.7821 32 1 5.1896 2.0594 -1.0871 33 1 3.6477 2.1420 -1.9727 34 1 3.5393 -0.3350 -2.0147 35 1 5.0811 -0.4176 -1.1290 36 1 5.4674 1.1573 -3.4410 37 1 7.6513 0.9375 -5.2049 38 1 6.7033 0.6195 -6.6775 39 1 5.9289 1.3823 -5.2678 40 1 6.6018 -3.6283 -4.5234 41 1 5.5676 -3.6925 -6.0152 42 1 7.6682 -4.3007 -7.1215 43 1 8.6552 -3.4666 -5.8417 44 1 6.7070 -2.1801 -7.8902 45 1 8.2295 -1.4678 -7.2018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691179391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:25 Heat of formation + Delta-G solvation = 4.916277 kcal Electronic energy + Delta-G solvation = -22184.479283 eV Core-core repulsion = 19010.169832 eV Total energy + Delta-G solvation = -3174.309451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.72306 -38.20813 -36.42128 -34.22243 -33.11445 -32.72948 -30.72175 -28.05283 -26.58506 -25.58411 -25.54902 -23.88218 -22.54756 -20.99705 -20.34333 -20.01248 -18.07410 -16.70507 -16.24295 -15.65538 -15.61465 -15.08172 -14.62960 -14.35074 -14.13787 -13.73658 -13.46511 -13.20167 -12.93097 -12.75272 -12.56019 -12.45167 -12.41949 -11.96528 -11.65287 -11.56279 -11.46548 -11.16755 -11.03055 -10.93045 -10.73699 -10.50569 -10.39735 -10.34294 -10.06143 -9.84191 -9.69707 -9.30844 -8.85608 -8.52804 -8.34948 -6.61397 -5.83072 -3.41790 1.48009 3.34209 3.43559 3.47406 3.58805 3.63236 4.37937 4.44847 4.51715 4.66276 4.98998 5.05959 5.25778 5.28563 5.43858 5.49357 5.54137 5.58827 5.64359 5.68319 5.71143 5.78377 5.84958 6.02715 6.05272 6.13711 6.15782 6.21461 6.29763 6.34715 6.44679 6.56231 6.63905 6.68391 6.73059 6.95587 6.99207 7.06313 7.20148 7.56126 7.81088 8.03944 8.48563 8.69350 9.15224 9.77194 10.35056 11.16875 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.004348 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.767069 B = 6438.668036 C = 7416.089775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.260 4.260 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.138 3.862 14 C 0.098 3.902 15 N -0.717 5.717 16 C 0.548 3.452 17 O -0.549 6.549 18 C -0.158 4.158 19 C -0.110 4.110 20 C -0.081 4.081 21 C -0.101 4.101 22 C -0.142 4.142 23 C -0.104 4.104 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.254 0.746 32 H 0.098 0.902 33 H 0.028 0.972 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.396 0.604 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 -5.947 -14.636 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.022 3.978 4 N -0.300 5.300 5 C -0.390 4.390 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.010 3.990 14 C -0.027 4.027 15 N -0.367 5.367 16 C 0.335 3.665 17 O -0.428 6.428 18 C -0.162 4.162 19 C -0.167 4.167 20 C -0.083 4.083 21 C -0.138 4.138 22 C -0.179 4.179 23 C -0.141 4.141 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.996 -6.558 -14.259 15.726 hybrid contribution 0.851 0.154 0.516 1.008 sum 1.848 -6.404 -13.742 15.273 Atomic orbital electron populations 1.21719 0.97354 1.00385 1.00976 1.22187 0.93787 1.00962 1.01592 1.20932 0.85073 0.92960 0.98881 1.43613 0.99432 1.84840 1.02093 1.19066 1.05611 1.20318 0.93961 0.92042 1.25169 1.00800 0.94553 0.98106 1.70001 1.25596 1.14848 1.42515 0.86351 0.81537 0.78463 0.81211 1.19962 1.21411 1.21579 1.21055 1.00278 0.91262 0.86388 1.22431 0.94832 1.02633 0.82816 1.46076 1.57625 1.08492 1.24546 1.18239 0.79529 0.84614 0.84074 1.90742 1.55603 1.26477 1.70006 1.20607 1.03849 0.94853 0.96850 1.20685 1.01971 0.92976 1.01029 1.23136 0.94071 0.94936 0.96173 1.22129 0.97707 0.92159 1.01787 1.22713 0.98673 0.97010 0.99542 1.22258 0.99468 0.97174 0.95174 0.93217 0.93480 0.93824 0.92926 0.92367 0.93599 0.94779 0.93591 0.88424 0.95369 0.93045 0.91844 0.76898 0.91057 0.91453 0.91299 0.89663 0.88824 0.90684 0.89875 0.88535 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.15 -2.71 6.23 -26.74 -0.17 -2.88 16 3 C 0.15 3.11 5.72 -4.04 -0.02 3.08 16 4 N -0.58 -14.16 2.43 -173.24 -0.42 -14.58 16 5 C -0.26 -7.01 9.45 -15.05 -0.14 -7.16 16 6 H 0.06 1.68 7.92 -52.49 -0.42 1.26 16 7 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 8 N -0.89 -24.81 11.47 55.49 0.64 -24.17 16 9 Si 0.90 21.53 29.60 -169.99 -5.03 16.50 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.14 3.10 5.45 -4.04 -0.02 3.08 16 14 C 0.10 2.05 6.00 -4.04 -0.02 2.03 16 15 N -0.72 -12.70 5.50 -61.49 -0.34 -13.04 16 16 C 0.55 9.89 7.75 -12.66 -0.10 9.80 16 17 O -0.55 -11.74 15.15 5.26 0.08 -11.66 16 18 C -0.16 -2.23 6.00 -102.85 -0.62 -2.85 16 19 C -0.11 -1.17 9.56 36.00 0.34 -0.82 16 20 C -0.08 -1.04 6.59 -100.49 -0.66 -1.70 16 21 C -0.10 -1.24 6.99 -27.56 -0.19 -1.43 16 22 C -0.14 -1.31 8.17 -26.19 -0.21 -1.52 16 23 C -0.10 -0.94 7.72 -27.40 -0.21 -1.15 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 1.01 6.64 -51.93 -0.34 0.67 16 28 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 29 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 31 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.10 2.46 5.52 -51.92 -0.29 2.18 16 33 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 34 H 0.05 1.10 6.64 -51.92 -0.34 0.75 16 35 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.40 6.03 6.58 -40.82 -0.27 5.76 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.59 7.91 -51.93 -0.41 0.18 16 39 H 0.07 0.69 6.71 -51.93 -0.35 0.35 16 40 H 0.08 1.24 7.49 -51.93 -0.39 0.86 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -30.67 363.02 -9.18 -39.85 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.83 Total: 4.71 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.75 Total: -3.08 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.12 Total: -51.79 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.67 -9.18 -39.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691179391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.767 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds