Wall clock time and date at job start Tue Mar 31 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47287 * 2 1 4 4 N 1.46502 * 109.46953 * 180.02562 * 3 2 1 5 5 C 1.36948 * 119.99714 * 275.30370 * 4 3 2 6 6 H 1.07997 * 119.99400 * 37.58208 * 5 4 3 7 7 C 1.38814 * 119.99946 * 217.57684 * 5 4 3 8 8 N 1.31613 * 119.99902 * 21.43685 * 7 5 4 9 9 Si 1.86798 * 119.99611 * 201.43148 * 7 5 4 10 10 H 1.48497 * 109.47386 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46712 * 120.00089 * 9 7 5 12 12 H 1.48495 * 109.47431 * 240.00145 * 9 7 5 13 13 C 1.46498 * 120.00322 * 95.30920 * 4 3 2 14 14 C 1.53000 * 109.47080 * 269.99447 * 13 4 3 15 15 N 1.46498 * 109.47080 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99689 * 179.73142 * 15 14 13 17 17 O 1.21617 * 120.00674 * 359.97438 * 16 15 14 18 18 C 1.47107 * 119.99969 * 179.97438 * 16 15 14 19 19 C 1.50697 * 119.99853 * 359.97438 * 18 16 15 20 20 C 1.32994 * 120.00122 * 179.97438 * 18 16 15 21 21 C 1.51403 * 136.31592 * 359.63141 * 20 18 16 22 22 C 1.53375 * 87.51790 * 206.05407 * 21 20 18 23 23 C 1.51403 * 136.31542 * 179.97438 * 20 18 16 24 24 H 1.09003 * 109.46899 * 300.00142 * 1 2 3 25 25 H 1.09001 * 109.47348 * 59.99654 * 1 2 3 26 26 H 1.08992 * 109.47617 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46866 * 239.99566 * 2 1 3 28 28 H 1.09008 * 109.47030 * 120.00115 * 2 1 3 29 29 H 1.08995 * 109.47522 * 59.99967 * 3 2 1 30 30 H 1.09001 * 109.47345 * 299.99656 * 3 2 1 31 31 H 0.97002 * 119.99878 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47255 * 150.00085 * 13 4 3 33 33 H 1.08999 * 109.47047 * 30.00096 * 13 4 3 34 34 H 1.09007 * 109.46555 * 60.00209 * 14 13 4 35 35 H 1.09004 * 109.47429 * 300.00639 * 14 13 4 36 36 H 0.96995 * 120.00416 * 0.02562 * 15 14 13 37 37 H 1.09004 * 109.46902 * 90.00066 * 19 18 16 38 38 H 1.09001 * 109.47385 * 209.99759 * 19 18 16 39 39 H 1.09000 * 109.47150 * 330.00473 * 19 18 16 40 40 H 1.08996 * 113.56404 * 320.64031 * 21 20 18 41 41 H 1.09001 * 113.55912 * 91.36852 * 21 20 18 42 42 H 1.09001 * 113.97030 * 220.29116 * 22 21 20 43 43 H 1.08995 * 113.59850 * 88.79830 * 22 21 20 44 44 H 1.08997 * 113.56486 * 268.63139 * 23 20 18 45 45 H 1.08998 * 113.56242 * 39.36848 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.3325 1.1800 6 1 3.8184 0.6869 1.9619 7 6 5.3624 2.0509 1.3716 8 7 5.6026 3.1236 0.6480 9 14 6.5989 1.4949 2.6567 10 1 6.0967 0.2702 3.3297 11 1 7.8977 1.2008 1.9992 12 1 6.7858 2.5715 3.6622 13 6 4.2370 1.5599 -1.2641 14 6 4.4919 0.1645 -1.8376 15 7 5.2244 0.2820 -3.1008 16 6 5.5659 -0.8263 -3.7873 17 8 5.2664 -1.9241 -3.3580 18 6 6.3011 -0.7084 -5.0561 19 6 6.6717 0.6518 -5.5884 20 6 6.6385 -1.8021 -5.7332 21 6 6.4720 -3.2962 -5.5534 22 6 7.7284 -3.4727 -6.4152 23 6 7.3662 -2.1092 -7.0250 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 6.4216 3.6258 0.7821 32 1 5.1896 2.0594 -1.0871 33 1 3.6477 2.1420 -1.9727 34 1 3.5393 -0.3350 -2.0147 35 1 5.0811 -0.4176 -1.1290 36 1 5.4674 1.1573 -3.4410 37 1 7.6513 0.9375 -5.2049 38 1 6.7033 0.6195 -6.6775 39 1 5.9289 1.3823 -5.2678 40 1 6.6018 -3.6283 -4.5234 41 1 5.5676 -3.6925 -6.0152 42 1 7.6682 -4.3007 -7.1215 43 1 8.6552 -3.4666 -5.8417 44 1 6.7070 -2.1801 -7.8902 45 1 8.2295 -1.4678 -7.2018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691179391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:25 Heat of formation + Delta-G solvation = -12.404126 kcal Electronic energy + Delta-G solvation = -22185.230352 eV Core-core repulsion = 19010.169832 eV Total energy + Delta-G solvation = -3175.060520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00051 -39.31634 -38.20378 -35.78688 -34.64776 -34.04933 -32.52655 -29.73344 -27.46537 -27.36135 -26.42423 -25.47427 -23.80322 -22.61345 -21.92675 -21.40610 -19.38620 -18.51932 -17.40387 -17.10330 -17.00825 -16.54747 -16.21225 -15.90836 -15.65635 -15.23438 -14.71210 -14.64613 -14.42909 -14.29911 -13.82380 -13.36554 -13.31939 -13.29657 -13.08601 -12.93265 -12.86097 -12.66655 -12.52247 -12.46678 -12.23144 -12.05037 -11.90029 -11.87911 -11.69410 -11.43769 -11.32266 -10.67887 -10.55350 -10.12977 -9.70986 -8.61421 -7.87951 -5.50976 0.37190 1.40366 1.45153 1.54447 2.19801 2.28093 2.48895 3.19390 3.41650 3.57858 3.75597 3.82836 4.01358 4.19595 4.24175 4.30665 4.35798 4.42118 4.50796 4.65865 4.70075 4.74393 4.75633 4.80618 4.82977 4.84369 4.97009 5.00530 5.04324 5.08531 5.14003 5.21068 5.24572 5.36626 5.37356 5.41594 5.42145 5.60813 5.63670 5.70697 5.76216 6.42970 6.63965 7.12362 7.27666 7.80303 8.32694 9.08041 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.004348 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.767069 B = 6438.668036 C = 7416.089775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.271 4.271 6 H 0.051 0.949 7 C -0.026 4.026 8 N -0.910 5.910 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.284 1.284 13 C 0.147 3.853 14 C 0.121 3.879 15 N -0.711 5.711 16 C 0.540 3.460 17 O -0.592 6.592 18 C -0.182 4.182 19 C -0.104 4.104 20 C -0.082 4.082 21 C -0.118 4.118 22 C -0.130 4.130 23 C -0.087 4.087 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.026 0.974 36 H 0.410 0.590 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 -6.047 -16.914 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.402 4.402 6 H 0.069 0.931 7 C -0.224 4.224 8 N -0.553 5.553 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.211 1.211 13 C 0.019 3.981 14 C -0.005 4.005 15 N -0.363 5.363 16 C 0.330 3.670 17 O -0.475 6.475 18 C -0.185 4.185 19 C -0.160 4.160 20 C -0.084 4.084 21 C -0.155 4.155 22 C -0.168 4.168 23 C -0.124 4.124 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.247 0.753 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.139 0.861 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.257 -6.638 -16.556 17.881 hybrid contribution 0.725 0.096 1.208 1.412 sum 1.983 -6.542 -15.348 16.801 Atomic orbital electron populations 1.21649 0.94119 1.01787 1.02061 1.22015 0.96531 0.98811 1.00124 1.21050 0.83297 0.94490 0.99127 1.43846 1.00899 1.85088 1.01946 1.19189 1.06336 1.19946 0.94704 0.93136 1.25735 1.02019 0.94698 0.99993 1.70082 1.25910 1.15532 1.43777 0.85509 0.79360 0.78054 0.79336 1.19862 1.21646 1.21059 1.20906 0.99207 0.91750 0.86201 1.21904 0.94181 1.00965 0.83488 1.45927 1.57388 1.09515 1.23429 1.19025 0.79029 0.83695 0.85214 1.90714 1.57423 1.27949 1.71408 1.20592 1.05207 0.97280 0.95430 1.20710 1.02107 0.90748 1.02470 1.23727 0.92462 0.94527 0.97677 1.22305 0.99984 0.92509 1.00693 1.22695 0.96662 0.98351 0.99055 1.22325 0.99778 0.96640 0.93633 0.92478 0.92046 0.92295 0.93855 0.94375 0.94491 0.93218 0.93639 0.90841 0.93721 0.93564 0.95536 0.75297 0.90581 0.88934 0.91166 0.93082 0.88125 0.88190 0.90044 0.86109 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.91 71.98 0.71 -3.22 16 2 C -0.13 -5.04 6.23 30.59 0.19 -4.85 16 3 C 0.15 6.13 5.72 86.38 0.49 6.63 16 4 N -0.60 -29.74 2.43 -702.00 -1.71 -31.45 16 5 C -0.27 -15.01 9.45 84.03 0.79 -14.21 16 6 H 0.05 2.85 7.92 -2.91 -0.02 2.83 16 7 C -0.03 -1.45 4.95 84.86 0.42 -1.03 16 8 N -0.91 -51.56 11.47 21.65 0.25 -51.31 16 9 Si 0.95 45.00 29.60 68.60 2.03 47.03 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 C 0.15 6.72 5.45 86.38 0.47 7.20 16 14 C 0.12 5.25 6.00 86.38 0.52 5.77 16 15 N -0.71 -25.72 5.50 -466.70 -2.57 -28.29 16 16 C 0.54 19.95 7.75 86.57 0.67 20.62 16 17 O -0.59 -26.51 15.15 -4.08 -0.06 -26.57 16 18 C -0.18 -4.97 6.00 -18.70 -0.11 -5.08 16 19 C -0.10 -1.98 9.56 71.24 0.68 -1.30 16 20 C -0.08 -1.97 6.59 -17.17 -0.11 -2.08 16 21 C -0.12 -2.83 6.99 30.06 0.21 -2.62 16 22 C -0.13 -2.05 8.17 30.95 0.25 -1.80 16 23 C -0.09 -1.25 7.72 30.16 0.23 -1.02 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.68 6.64 -2.39 -0.02 1.66 16 28 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 30 H 0.05 1.92 7.83 -2.39 -0.02 1.90 16 31 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 32 H 0.07 3.80 5.52 -2.38 -0.01 3.78 16 33 H 0.04 1.87 7.86 -2.39 -0.02 1.85 16 34 H 0.05 2.04 6.64 -2.38 -0.02 2.03 16 35 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.41 12.47 6.58 -92.71 -0.61 11.86 16 37 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.09 1.29 7.91 -2.39 -0.02 1.28 16 39 H 0.07 1.29 6.71 -2.39 -0.02 1.28 16 40 H 0.05 1.57 7.49 -2.39 -0.02 1.55 16 41 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 42 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -68.58 363.02 3.71 -64.87 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.35 Total: 22.72 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.42 Total: 3.00 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -4.03 Total: -111.04 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.06 Total: -26.57 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -68.58 3.71 -64.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691179391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.463 kcal (2) G-P(sol) polarization free energy of solvation -68.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds