Wall clock time and date at job start Tue Mar 31 2020 01:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47346 * 2 1 4 4 H 1.08992 * 109.47110 * 304.99831 * 3 2 1 5 5 C 1.53001 * 109.46984 * 185.00039 * 3 2 1 6 6 N 1.46497 * 109.46944 * 185.00194 * 5 3 2 7 7 C 1.34774 * 120.00260 * 180.02562 * 6 5 3 8 8 O 1.21292 * 119.99620 * 354.94059 * 7 6 5 9 9 C 1.50702 * 120.00482 * 174.94152 * 7 6 5 10 10 C 1.52995 * 109.47149 * 94.91241 * 9 7 6 11 11 C 1.52993 * 117.50179 * 248.74951 * 10 9 7 12 12 C 1.53004 * 117.49925 * 180.08941 * 10 9 7 13 13 C 1.52998 * 109.47128 * 214.91696 * 9 7 6 14 14 C 1.52996 * 117.50145 * 133.94353 * 13 9 7 15 15 C 1.53001 * 117.50259 * 65.28294 * 13 9 7 16 16 N 1.46493 * 109.46782 * 65.00258 * 3 2 1 17 17 C 1.36936 * 119.99873 * 274.99856 * 16 3 2 18 18 H 1.08004 * 120.00369 * 0.02562 * 17 16 3 19 19 C 1.38817 * 120.00240 * 180.02562 * 17 16 3 20 20 N 1.31618 * 119.99605 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00163 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47154 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46739 * 119.99932 * 21 19 17 24 24 H 1.48494 * 109.47018 * 239.99807 * 21 19 17 25 25 H 1.08998 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46864 * 59.99845 * 1 2 3 27 27 H 1.08992 * 109.46942 * 299.99916 * 1 2 3 28 28 H 1.09000 * 109.47321 * 120.00430 * 2 1 3 29 29 H 1.09003 * 109.47008 * 239.99624 * 2 1 3 30 30 H 1.09000 * 109.47134 * 305.00368 * 5 3 2 31 31 H 1.08994 * 109.47287 * 65.00161 * 5 3 2 32 32 H 0.96998 * 120.00520 * 359.97438 * 6 5 3 33 33 H 1.08995 * 109.46988 * 334.91338 * 9 7 6 34 34 H 1.09003 * 115.55188 * 34.42189 * 10 9 7 35 35 H 1.09000 * 117.49824 * 359.97438 * 11 10 9 36 36 H 1.08999 * 117.50698 * 145.02217 * 11 10 9 37 37 H 1.09000 * 117.49631 * 214.98125 * 12 10 9 38 38 H 1.08997 * 117.49739 * 359.97290 * 12 10 9 39 39 H 1.09006 * 115.54697 * 279.61573 * 13 9 7 40 40 H 1.09000 * 117.49833 * 0.02562 * 14 13 9 41 41 H 1.09000 * 117.50304 * 145.01367 * 14 13 9 42 42 H 1.09001 * 117.49889 * 214.98077 * 15 13 9 43 43 H 1.09002 * 117.49492 * 359.97438 * 15 13 9 44 44 H 0.96995 * 120.00650 * 95.00075 * 16 3 2 45 45 H 0.97003 * 120.00112 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8166 -0.0059 7 6 5.3857 3.0629 -0.0868 8 8 6.1704 2.1414 -0.1666 9 6 5.8898 4.4831 -0.0781 10 6 6.2721 4.8799 1.3492 11 6 5.4022 5.9262 2.0486 12 6 6.8082 6.2959 1.5693 13 6 7.1173 4.5942 -0.9845 14 6 7.1721 5.7727 -1.9585 15 6 6.9133 4.3579 -2.4824 16 7 1.6526 2.0974 1.2518 17 6 0.4158 2.6734 1.3688 18 1 -0.2742 2.6445 0.5384 19 6 0.0487 3.2944 2.5548 20 7 0.8893 3.3291 3.5670 21 14 -1.6382 4.0808 2.7142 22 1 -2.3875 3.9068 1.4440 23 1 -2.3840 3.4320 3.8223 24 1 -1.4838 5.5292 3.0028 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.9954 0.8309 0.6659 31 1 3.8499 1.0376 -1.0960 32 1 3.4412 3.5483 0.1309 33 1 5.1074 5.1485 -0.4430 34 1 6.6909 4.0822 1.9627 35 1 4.5578 6.3324 1.4917 36 1 5.2490 5.8173 3.1223 37 1 7.5794 6.4298 2.3278 38 1 6.8889 6.9446 0.6971 39 1 8.0575 4.2597 -0.5458 40 1 6.3337 6.4693 -1.9533 41 1 8.1482 6.2136 -2.1609 42 1 7.7193 3.8685 -3.0291 43 1 5.9045 4.1230 -2.8219 44 1 2.2720 2.1230 1.9978 45 1 0.6327 3.7628 4.3959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698616017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:06 Heat of formation + Delta-G solvation = 6.701519 kcal Electronic energy + Delta-G solvation = -22659.293621 eV Core-core repulsion = 19485.061584 eV Total energy + Delta-G solvation = -3174.232037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.91741 -37.73193 -36.51827 -36.10919 -33.59945 -32.36401 -29.96449 -29.44406 -27.46807 -23.80957 -22.79281 -22.41834 -22.21783 -21.34700 -20.71166 -20.07859 -19.31355 -17.44340 -16.79510 -15.95910 -15.63489 -15.24855 -14.73290 -14.54412 -14.11930 -14.00211 -13.51887 -13.34679 -13.07087 -12.93123 -12.53671 -12.11546 -11.78609 -11.58815 -11.51081 -11.39624 -11.34768 -10.97478 -10.90553 -10.73670 -10.47760 -10.43522 -10.36865 -10.27464 -10.19060 -9.99801 -9.78349 -9.54892 -9.22743 -8.95647 -8.54477 -7.03501 -5.82180 -3.11130 2.99658 3.37876 3.44557 3.46580 3.46754 3.85742 3.96730 4.53059 4.59316 4.78999 4.87526 5.00643 5.04655 5.13975 5.32206 5.38932 5.43679 5.46601 5.51742 5.57157 5.58922 5.73096 5.79797 5.86402 5.93457 5.96903 5.99074 6.06528 6.07290 6.17559 6.19756 6.25328 6.34477 6.43410 6.56159 6.58530 6.61920 6.95613 7.04319 7.23793 7.66038 8.02577 8.35055 8.66472 9.47187 10.02698 10.38810 11.39638 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.005110 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.144290 B = 5478.422079 C = 6679.837275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.052 0.948 5 C 0.115 3.885 6 N -0.711 5.711 7 C 0.521 3.479 8 O -0.551 6.551 9 C -0.042 4.042 10 C -0.140 4.140 11 C -0.169 4.169 12 C -0.173 4.173 13 C -0.121 4.121 14 C -0.180 4.180 15 C -0.176 4.176 16 N -0.721 5.721 17 C -0.236 4.236 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.928 5.928 21 Si 0.901 3.099 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.409 0.591 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.385 0.615 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.952 3.905 -8.705 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.070 0.930 5 C -0.010 4.010 6 N -0.363 5.363 7 C 0.306 3.694 8 O -0.429 6.429 9 C -0.064 4.064 10 C -0.159 4.159 11 C -0.206 4.206 12 C -0.210 4.210 13 C -0.140 4.140 14 C -0.217 4.217 15 C -0.213 4.213 16 N -0.363 5.363 17 C -0.367 4.367 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.576 5.576 21 Si 0.732 3.268 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.246 0.754 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.312 3.313 -8.803 13.957 hybrid contribution -1.152 0.667 0.567 1.447 sum 9.159 3.980 -8.236 12.945 Atomic orbital electron populations 1.21766 0.95750 0.99599 1.03216 1.22072 0.96934 0.98478 0.99990 1.20554 0.90020 0.92733 0.91393 0.92964 1.21643 0.95532 0.82971 1.00852 1.46025 1.07181 1.10625 1.72426 1.20354 0.82388 0.90682 0.75940 1.90645 1.55701 1.46221 1.50348 1.20418 0.96781 0.94447 0.94732 1.21954 1.05554 0.93282 0.95110 1.23072 0.93960 1.02233 1.01362 1.22927 0.97500 0.97407 1.03174 1.21869 0.98910 1.02668 0.90557 1.23052 1.02899 0.91405 1.04303 1.22908 1.02871 0.98840 0.96685 1.42450 1.16740 1.65809 1.11281 1.19246 0.91931 1.27574 0.97977 0.90916 1.24719 0.97958 1.01612 0.96403 1.69673 1.35042 1.48951 1.03935 0.86216 0.84231 0.78892 0.77442 1.20591 1.21958 1.21959 0.94905 0.94157 0.89680 0.92544 0.93906 0.91949 0.92122 0.75428 0.89516 0.87477 0.88467 0.88368 0.88969 0.88709 0.87216 0.88876 0.88813 0.88808 0.89058 0.78057 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.02 2.59 -67.93 -0.18 2.84 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.11 1.97 5.24 -4.04 -0.02 1.95 16 6 N -0.71 -11.94 5.38 -60.30 -0.32 -12.27 16 7 C 0.52 8.69 6.58 -10.99 -0.07 8.61 16 8 O -0.55 -10.84 16.47 5.55 0.09 -10.75 16 9 C -0.04 -0.57 2.44 -91.77 -0.22 -0.79 16 10 C -0.14 -1.86 5.13 -90.62 -0.46 -2.33 16 11 C -0.17 -2.19 10.18 -26.70 -0.27 -2.46 16 12 C -0.17 -1.90 9.88 -26.69 -0.26 -2.16 16 13 C -0.12 -1.47 4.25 -90.62 -0.39 -1.86 16 14 C -0.18 -1.76 10.18 -26.70 -0.27 -2.03 16 15 C -0.18 -2.00 10.01 -26.69 -0.27 -2.27 16 16 N -0.72 -16.29 4.51 -53.43 -0.24 -16.53 16 17 C -0.24 -5.93 7.75 -15.06 -0.12 -6.05 16 18 H 0.07 1.80 7.32 -52.48 -0.38 1.41 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -26.43 13.06 55.49 0.72 -25.70 16 21 Si 0.90 21.31 29.55 -169.99 -5.02 16.29 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.79 5.99 -51.93 -0.31 1.48 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.41 6.97 8.14 -40.82 -0.33 6.64 16 33 H 0.09 1.08 7.70 -51.93 -0.40 0.68 16 34 H 0.11 1.57 8.11 -51.93 -0.42 1.15 16 35 H 0.10 1.25 8.05 -51.93 -0.42 0.84 16 36 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.39 9.60 7.80 -40.82 -0.32 9.29 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -28.46 368.24 -9.72 -38.18 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -8.05 Total: 16.87 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.44 Total: -11.65 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.16 Total: -54.50 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.46 -9.72 -38.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698616017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.884 kcal (2) G-P(sol) polarization free energy of solvation -28.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds