Wall clock time and date at job start Tue Mar 31 2020 01:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47346 * 2 1 4 4 H 1.08992 * 109.47110 * 304.99831 * 3 2 1 5 5 C 1.53001 * 109.46984 * 185.00039 * 3 2 1 6 6 N 1.46497 * 109.46944 * 185.00194 * 5 3 2 7 7 C 1.34774 * 120.00260 * 180.02562 * 6 5 3 8 8 O 1.21292 * 119.99620 * 354.94059 * 7 6 5 9 9 C 1.50702 * 120.00482 * 174.94152 * 7 6 5 10 10 C 1.52995 * 109.47149 * 94.91241 * 9 7 6 11 11 C 1.52993 * 117.50179 * 248.74951 * 10 9 7 12 12 C 1.53004 * 117.49925 * 180.08941 * 10 9 7 13 13 C 1.52998 * 109.47128 * 214.91696 * 9 7 6 14 14 C 1.52996 * 117.50145 * 133.94353 * 13 9 7 15 15 C 1.53001 * 117.50259 * 65.28294 * 13 9 7 16 16 N 1.46493 * 109.46782 * 65.00258 * 3 2 1 17 17 C 1.36936 * 119.99873 * 274.99856 * 16 3 2 18 18 H 1.08004 * 120.00369 * 0.02562 * 17 16 3 19 19 C 1.38817 * 120.00240 * 180.02562 * 17 16 3 20 20 N 1.31618 * 119.99605 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00163 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47154 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46739 * 119.99932 * 21 19 17 24 24 H 1.48494 * 109.47018 * 239.99807 * 21 19 17 25 25 H 1.08998 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46864 * 59.99845 * 1 2 3 27 27 H 1.08992 * 109.46942 * 299.99916 * 1 2 3 28 28 H 1.09000 * 109.47321 * 120.00430 * 2 1 3 29 29 H 1.09003 * 109.47008 * 239.99624 * 2 1 3 30 30 H 1.09000 * 109.47134 * 305.00368 * 5 3 2 31 31 H 1.08994 * 109.47287 * 65.00161 * 5 3 2 32 32 H 0.96998 * 120.00520 * 359.97438 * 6 5 3 33 33 H 1.08995 * 109.46988 * 334.91338 * 9 7 6 34 34 H 1.09003 * 115.55188 * 34.42189 * 10 9 7 35 35 H 1.09000 * 117.49824 * 359.97438 * 11 10 9 36 36 H 1.08999 * 117.50698 * 145.02217 * 11 10 9 37 37 H 1.09000 * 117.49631 * 214.98125 * 12 10 9 38 38 H 1.08997 * 117.49739 * 359.97290 * 12 10 9 39 39 H 1.09006 * 115.54697 * 279.61573 * 13 9 7 40 40 H 1.09000 * 117.49833 * 0.02562 * 14 13 9 41 41 H 1.09000 * 117.50304 * 145.01367 * 14 13 9 42 42 H 1.09001 * 117.49889 * 214.98077 * 15 13 9 43 43 H 1.09002 * 117.49492 * 359.97438 * 15 13 9 44 44 H 0.96995 * 120.00650 * 95.00075 * 16 3 2 45 45 H 0.97003 * 120.00112 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8166 -0.0059 7 6 5.3857 3.0629 -0.0868 8 8 6.1704 2.1414 -0.1666 9 6 5.8898 4.4831 -0.0781 10 6 6.2721 4.8799 1.3492 11 6 5.4022 5.9262 2.0486 12 6 6.8082 6.2959 1.5693 13 6 7.1173 4.5942 -0.9845 14 6 7.1721 5.7727 -1.9585 15 6 6.9133 4.3579 -2.4824 16 7 1.6526 2.0974 1.2518 17 6 0.4158 2.6734 1.3688 18 1 -0.2742 2.6445 0.5384 19 6 0.0487 3.2944 2.5548 20 7 0.8893 3.3291 3.5670 21 14 -1.6382 4.0808 2.7142 22 1 -2.3875 3.9068 1.4440 23 1 -2.3840 3.4320 3.8223 24 1 -1.4838 5.5292 3.0028 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 3.9954 0.8309 0.6659 31 1 3.8499 1.0376 -1.0960 32 1 3.4412 3.5483 0.1309 33 1 5.1074 5.1485 -0.4430 34 1 6.6909 4.0822 1.9627 35 1 4.5578 6.3324 1.4917 36 1 5.2490 5.8173 3.1223 37 1 7.5794 6.4298 2.3278 38 1 6.8889 6.9446 0.6971 39 1 8.0575 4.2597 -0.5458 40 1 6.3337 6.4693 -1.9533 41 1 8.1482 6.2136 -2.1609 42 1 7.7193 3.8685 -3.0291 43 1 5.9045 4.1230 -2.8219 44 1 2.2720 2.1230 1.9978 45 1 0.6327 3.7628 4.3959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698616017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:06 Heat of formation + Delta-G solvation = -9.189552 kcal Electronic energy + Delta-G solvation = -22659.982709 eV Core-core repulsion = 19485.061584 eV Total energy + Delta-G solvation = -3174.921125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15940 -38.94737 -38.01876 -37.04078 -35.17383 -34.11408 -31.53678 -30.82030 -28.93056 -25.60913 -24.20768 -23.41866 -23.09862 -22.34643 -21.93835 -21.56878 -20.53468 -19.23448 -18.19037 -17.06869 -17.00843 -16.74822 -16.03903 -15.88096 -15.58876 -15.21878 -14.98821 -14.62853 -14.54756 -14.33205 -14.02808 -13.68907 -12.99494 -12.81779 -12.77922 -12.72483 -12.46321 -12.39536 -12.35349 -12.30404 -12.06701 -11.86375 -11.62507 -11.57867 -11.33077 -11.31098 -11.19698 -10.91618 -10.74111 -10.45773 -9.96680 -8.95926 -7.85891 -5.12952 1.49514 1.52119 1.59529 1.67337 2.25376 2.60664 2.85970 3.00982 3.47796 3.58603 3.78439 3.87783 3.91231 3.97351 4.06362 4.11797 4.16822 4.30809 4.36640 4.39418 4.48188 4.51477 4.57004 4.71404 4.80711 4.83817 4.86577 4.87791 5.04265 5.07725 5.09953 5.14120 5.19193 5.21207 5.27843 5.30292 5.34510 5.50405 5.60226 5.63362 5.72311 6.33985 6.65048 7.30748 7.41997 8.13504 8.38871 9.37127 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.005110 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.144290 B = 5478.422079 C = 6679.837275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.059 0.941 5 C 0.122 3.878 6 N -0.711 5.711 7 C 0.518 3.482 8 O -0.584 6.584 9 C -0.032 4.032 10 C -0.156 4.156 11 C -0.182 4.182 12 C -0.142 4.142 13 C -0.139 4.139 14 C -0.152 4.152 15 C -0.186 4.186 16 N -0.726 5.726 17 C -0.215 4.215 18 H 0.080 0.920 19 C -0.071 4.071 20 N -0.966 5.966 21 Si 0.957 3.043 22 H -0.266 1.266 23 H -0.303 1.303 24 H -0.298 1.298 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.409 0.591 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.372 0.628 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.131 4.803 -10.770 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.077 0.923 5 C -0.003 4.003 6 N -0.362 5.362 7 C 0.305 3.695 8 O -0.464 6.464 9 C -0.054 4.054 10 C -0.175 4.175 11 C -0.219 4.219 12 C -0.179 4.179 13 C -0.157 4.157 14 C -0.189 4.189 15 C -0.223 4.223 16 N -0.367 5.367 17 C -0.346 4.346 18 H 0.098 0.902 19 C -0.263 4.263 20 N -0.618 5.618 21 Si 0.788 3.212 22 H -0.191 1.191 23 H -0.231 1.231 24 H -0.226 1.226 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.245 0.755 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.132 0.868 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.204 0.796 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.476 4.199 -10.923 15.706 hybrid contribution -1.178 0.289 1.138 1.663 sum 9.298 4.489 -9.784 14.225 Atomic orbital electron populations 1.21690 0.95849 1.00585 1.01818 1.21997 0.96729 0.97425 1.00926 1.20696 0.90824 0.93234 0.89559 0.92291 1.21536 0.94450 0.83226 1.01048 1.46062 1.07452 1.10368 1.72297 1.20991 0.81853 0.91911 0.74718 1.90621 1.56328 1.47605 1.51881 1.20371 0.97651 0.92092 0.95241 1.21878 1.06802 0.93989 0.94802 1.23070 0.95333 1.02837 1.00702 1.23019 0.96075 0.95166 1.03630 1.21813 0.97813 1.05359 0.90733 1.23145 1.04309 0.90459 1.00950 1.22958 1.02714 1.00650 0.95972 1.42562 1.15786 1.66054 1.12270 1.19527 0.92412 1.25220 0.97488 0.90216 1.25343 1.00817 1.03498 0.96654 1.69818 1.36686 1.50988 1.04291 0.85303 0.81051 0.77467 0.77359 1.19073 1.23126 1.22555 0.92882 0.93140 0.93260 0.93791 0.90744 0.93666 0.90448 0.75503 0.88374 0.89587 0.88462 0.89553 0.87706 0.86800 0.88081 0.87800 0.86875 0.88356 0.89781 0.79639 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.18 71.98 0.66 -4.13 16 2 C -0.13 -4.29 5.61 30.59 0.17 -4.11 16 3 C 0.17 5.93 2.59 44.99 0.12 6.05 16 4 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 5 C 0.12 4.14 5.24 86.38 0.45 4.59 16 6 N -0.71 -23.81 5.38 -463.06 -2.49 -26.30 16 7 C 0.52 17.31 6.58 87.66 0.58 17.88 16 8 O -0.58 -23.22 16.47 -3.07 -0.05 -23.27 16 9 C -0.03 -0.84 2.44 -11.54 -0.03 -0.87 16 10 C -0.16 -4.10 5.13 -10.80 -0.06 -4.15 16 11 C -0.18 -4.65 10.18 30.62 0.31 -4.34 16 12 C -0.14 -2.84 9.88 30.62 0.30 -2.54 16 13 C -0.14 -3.16 4.25 -10.80 -0.05 -3.21 16 14 C -0.15 -2.51 10.18 30.62 0.31 -2.20 16 15 C -0.19 -3.92 10.01 30.62 0.31 -3.61 16 16 N -0.73 -32.87 4.51 -322.95 -1.46 -34.33 16 17 C -0.21 -10.70 7.75 84.03 0.65 -10.05 16 18 H 0.08 3.83 7.32 -2.91 -0.02 3.81 16 19 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 20 N -0.97 -56.35 13.06 21.65 0.28 -56.07 16 21 Si 0.96 44.12 29.55 68.60 2.03 46.15 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 2.02 5.99 -2.39 -0.01 2.00 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.41 13.87 8.14 -92.71 -0.75 13.11 16 33 H 0.10 2.31 7.70 -2.39 -0.02 2.29 16 34 H 0.09 2.61 8.11 -2.39 -0.02 2.59 16 35 H 0.10 2.46 8.05 -2.39 -0.02 2.44 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 38 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 40 H 0.10 1.54 8.08 -2.39 -0.02 1.52 16 41 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.37 18.93 7.80 -92.71 -0.72 18.21 16 45 H 0.25 14.18 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -61.64 368.24 2.00 -59.64 By element: Atomic # 1 Polarization: 48.72 SS G_CDS: -0.51 Total: 48.21 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 4.20 Total: -14.02 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -3.67 Total: -116.70 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.05 Total: -23.27 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -61.64 2.00 -59.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698616017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.451 kcal (2) G-P(sol) polarization free energy of solvation -61.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds