Wall clock time and date at job start Tue Mar 31 2020 01:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53000 * 109.47060 * 175.00005 * 3 2 1 6 6 N 1.46507 * 109.46803 * 175.00213 * 5 3 2 7 7 C 1.34773 * 119.99647 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00340 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99967 * 179.97438 * 7 6 5 10 10 C 1.53006 * 109.46724 * 60.00351 * 9 7 6 11 11 C 1.53004 * 117.49572 * 248.74822 * 10 9 7 12 12 C 1.53000 * 117.49667 * 180.08880 * 10 9 7 13 13 C 1.52997 * 109.47267 * 179.97438 * 9 7 6 14 14 C 1.52997 * 117.49977 * 128.74795 * 13 9 7 15 15 C 1.53000 * 117.49865 * 60.09031 * 13 9 7 16 16 N 1.46500 * 109.47007 * 294.99774 * 3 2 1 17 17 C 1.36933 * 119.99983 * 84.99832 * 16 3 2 18 18 H 1.08002 * 120.00189 * 0.02562 * 17 16 3 19 19 C 1.38812 * 120.00422 * 179.97438 * 17 16 3 20 20 N 1.31623 * 119.99438 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00488 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47149 * 89.99897 * 21 19 17 23 23 H 1.48501 * 109.46970 * 210.00013 * 21 19 17 24 24 H 1.48501 * 109.47193 * 329.99772 * 21 19 17 25 25 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 27 27 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 28 28 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 29 29 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 30 30 H 1.09008 * 109.47142 * 294.99397 * 5 3 2 31 31 H 1.08990 * 109.47170 * 54.99895 * 5 3 2 32 32 H 0.96994 * 119.99737 * 359.97438 * 6 5 3 33 33 H 1.08994 * 109.46898 * 300.00344 * 9 7 6 34 34 H 1.08995 * 115.55322 * 34.41154 * 10 9 7 35 35 H 1.09005 * 117.49524 * 359.97438 * 11 10 9 36 36 H 1.08994 * 117.49852 * 145.01669 * 11 10 9 37 37 H 1.08993 * 117.49969 * 214.97408 * 12 10 9 38 38 H 1.09001 * 117.49750 * 0.02562 * 12 10 9 39 39 H 1.08999 * 115.54944 * 274.42306 * 13 9 7 40 40 H 1.09011 * 117.49527 * 359.97438 * 14 13 9 41 41 H 1.08994 * 117.49871 * 145.01937 * 14 13 9 42 42 H 1.09000 * 117.50020 * 214.97835 * 15 13 9 43 43 H 1.09001 * 117.49625 * 359.97438 * 15 13 9 44 44 H 0.96997 * 120.00274 * 264.99726 * 16 3 2 45 45 H 0.97001 * 120.00131 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 7 4.0631 2.8167 0.0060 7 6 5.3857 3.0629 0.0869 8 8 6.1634 2.1482 0.2583 9 6 5.8983 4.4747 -0.0368 10 6 5.2934 5.3360 1.0737 11 6 4.2862 6.4122 0.6636 12 6 5.6918 6.8125 1.1188 13 6 7.4230 4.4766 0.0903 14 6 8.2217 5.1975 -0.9975 15 6 8.2185 3.6680 -0.9365 16 7 1.6525 2.0974 -1.2518 17 6 0.4157 2.6734 -1.3689 18 1 -0.2739 2.6452 -0.5382 19 6 0.0487 3.2945 -2.5548 20 7 0.8897 3.3301 -3.5666 21 14 -1.6382 4.0808 -2.7143 22 1 -1.5655 5.5000 -2.2832 23 1 -2.0830 4.0155 -4.1296 24 1 -2.6071 3.3521 -1.8568 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 3.8499 1.0376 1.0961 31 1 3.9953 0.8310 -0.6658 32 1 3.4411 3.5482 -0.1315 33 1 5.6137 4.8807 -1.0075 34 1 5.1295 4.8296 2.0249 35 1 4.0548 6.5069 -0.3974 36 1 3.4599 6.6141 1.3451 37 1 5.7897 7.2776 2.0996 38 1 6.3845 7.1703 0.3570 39 1 7.8098 4.5164 1.1085 40 1 7.6608 5.6701 -1.8040 41 1 9.1340 5.7113 -0.6949 42 1 9.1289 3.1762 -0.5939 43 1 7.6556 3.1344 -1.7023 44 1 2.2720 2.1231 -1.9978 45 1 0.6332 3.7638 -4.3955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698616018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:08 Heat of formation + Delta-G solvation = -7.940093 kcal Electronic energy + Delta-G solvation = -22698.895731 eV Core-core repulsion = 19524.028786 eV Total energy + Delta-G solvation = -3174.866945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.16855 -38.89004 -38.01282 -37.05160 -35.10800 -34.09877 -31.53686 -30.82170 -28.89275 -25.59670 -24.18715 -23.36918 -23.08653 -22.29792 -21.99139 -21.54251 -20.54756 -19.21163 -18.12556 -17.16818 -16.85841 -16.68049 -16.14670 -15.84321 -15.53179 -15.21007 -14.96646 -14.61767 -14.54523 -14.36852 -13.99170 -13.70892 -12.98391 -12.82086 -12.74336 -12.65506 -12.47276 -12.37503 -12.32806 -12.27711 -12.10421 -11.86345 -11.62740 -11.52235 -11.32512 -11.26366 -11.17567 -10.90066 -10.71244 -10.44151 -9.93135 -8.95933 -7.86124 -5.12969 1.50608 1.52223 1.58929 1.71252 2.27800 2.60943 2.86208 3.05133 3.47779 3.62285 3.76717 3.86919 3.92497 3.98287 4.08723 4.15133 4.19687 4.34951 4.38842 4.41514 4.49113 4.49804 4.56833 4.74801 4.82501 4.86219 4.87613 4.89116 5.05819 5.09740 5.10426 5.14486 5.21437 5.22263 5.28902 5.33093 5.36659 5.51208 5.60987 5.63776 5.72418 6.33845 6.67977 7.33626 7.41896 8.13421 8.38845 9.36820 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.005008 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.479927 B = 5589.697318 C = 6477.272333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.058 0.942 5 C 0.123 3.877 6 N -0.710 5.710 7 C 0.513 3.487 8 O -0.576 6.576 9 C -0.039 4.039 10 C -0.152 4.152 11 C -0.183 4.183 12 C -0.149 4.149 13 C -0.131 4.131 14 C -0.161 4.161 15 C -0.175 4.175 16 N -0.726 5.726 17 C -0.214 4.214 18 H 0.079 0.921 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.958 3.042 22 H -0.289 1.289 23 H -0.305 1.305 24 H -0.272 1.272 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.409 0.591 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.372 0.628 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.074 4.529 10.373 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.057 3.943 4 H 0.076 0.924 5 C -0.002 4.002 6 N -0.361 5.361 7 C 0.300 3.700 8 O -0.457 6.457 9 C -0.060 4.060 10 C -0.171 4.171 11 C -0.220 4.220 12 C -0.186 4.186 13 C -0.149 4.149 14 C -0.198 4.198 15 C -0.212 4.212 16 N -0.366 5.366 17 C -0.346 4.346 18 H 0.097 0.903 19 C -0.264 4.264 20 N -0.619 5.619 21 Si 0.789 3.211 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.197 1.197 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.245 0.755 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.203 0.797 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.419 3.923 10.557 15.342 hybrid contribution -1.224 0.393 -1.008 1.633 sum 9.195 4.316 9.549 13.941 Atomic orbital electron populations 1.21691 0.95895 1.00570 1.01799 1.21991 0.96683 0.97421 1.00936 1.20694 0.90911 0.93199 0.89503 0.92429 1.21527 0.94379 0.83234 1.01072 1.46008 1.07479 1.10254 1.72357 1.20967 0.81916 0.91663 0.75417 1.90633 1.56586 1.47511 1.50923 1.20443 0.94765 0.90854 0.99973 1.21946 1.05084 0.91324 0.98743 1.23126 0.93890 1.02810 1.02191 1.23006 0.97225 0.94540 1.03793 1.21823 0.90532 1.06099 0.96452 1.23167 1.02394 0.94087 1.00114 1.22752 1.02144 0.94314 1.01977 1.42548 1.15776 1.66056 1.12257 1.19483 0.92446 1.25241 0.97443 0.90275 1.25345 1.00890 1.03503 0.96642 1.69809 1.36777 1.51021 1.04308 0.85361 0.81189 0.78568 0.75996 1.21668 1.23268 1.19690 0.92889 0.93186 0.93272 0.93716 0.90776 0.90560 0.93513 0.75486 0.89004 0.87884 0.89345 0.88086 0.87195 0.87821 0.87181 0.88725 0.86633 0.88480 0.91308 0.79660 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 9.18 71.98 0.66 -4.15 16 2 C -0.13 -4.27 5.61 30.59 0.17 -4.10 16 3 C 0.17 5.94 2.59 44.99 0.12 6.06 16 4 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 5 C 0.12 4.14 5.23 86.38 0.45 4.59 16 6 N -0.71 -23.71 5.29 -463.04 -2.45 -26.16 16 7 C 0.51 16.99 7.01 87.66 0.61 17.61 16 8 O -0.58 -22.24 15.08 -3.04 -0.05 -22.28 16 9 C -0.04 -1.03 2.50 -11.54 -0.03 -1.06 16 10 C -0.15 -3.40 4.93 -10.79 -0.05 -3.45 16 11 C -0.18 -3.96 10.18 30.62 0.31 -3.65 16 12 C -0.15 -2.62 9.88 30.62 0.30 -2.32 16 13 C -0.13 -3.11 4.38 -10.80 -0.05 -3.16 16 14 C -0.16 -3.16 10.18 30.62 0.31 -2.85 16 15 C -0.17 -4.43 8.98 30.62 0.27 -4.16 16 16 N -0.73 -32.81 4.51 -322.94 -1.46 -34.27 16 17 C -0.21 -10.69 7.75 84.03 0.65 -10.04 16 18 H 0.08 3.80 7.32 -2.91 -0.02 3.78 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.97 -56.38 13.06 21.65 0.28 -56.10 16 21 Si 0.96 44.11 29.55 68.60 2.03 46.13 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.31 -14.59 7.11 99.48 0.71 -13.89 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 2.02 5.99 -2.38 -0.01 2.00 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.41 14.02 8.04 -92.71 -0.74 13.28 16 33 H 0.09 2.50 7.66 -2.39 -0.02 2.48 16 34 H 0.10 2.36 8.11 -2.39 -0.02 2.34 16 35 H 0.09 2.12 8.05 -2.38 -0.02 2.10 16 36 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 2.51 8.11 -2.39 -0.02 2.49 16 40 H 0.09 1.83 8.05 -2.38 -0.02 1.81 16 41 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.07 2.06 8.10 -2.39 -0.02 2.04 16 44 H 0.37 18.83 7.80 -92.71 -0.72 18.11 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -60.39 365.91 2.06 -58.33 By element: Atomic # 1 Polarization: 48.91 SS G_CDS: -0.50 Total: 48.41 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 4.20 Total: -14.05 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -3.62 Total: -116.53 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.28 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -60.39 2.06 -58.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698616018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.388 kcal (2) G-P(sol) polarization free energy of solvation -60.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds