Wall clock time and date at job start Tue Mar 31 2020 01:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 H 1.08999 * 115.54372 * 34.27891 * 9 7 6 11 11 C 1.52994 * 117.50165 * 248.61437 * 9 7 6 12 12 C 1.52992 * 117.50315 * 179.97438 * 9 7 6 13 13 H 1.09006 * 117.49558 * 359.97438 * 12 9 7 14 14 C 1.53002 * 117.50022 * 214.98091 * 12 9 7 15 15 C 1.53782 * 113.61599 * 157.49361 * 14 12 9 16 16 C 1.53782 * 87.08254 * 220.01824 * 15 14 12 17 17 C 1.53778 * 113.61364 * 59.99602 * 14 12 9 18 18 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 19 19 C 1.36937 * 119.99934 * 274.99832 * 18 3 2 20 20 H 1.07998 * 120.00035 * 0.02562 * 19 18 3 21 21 C 1.38810 * 120.00229 * 180.02562 * 19 18 3 22 22 N 1.31614 * 120.00215 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99755 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47094 * 89.99844 * 23 21 19 25 25 H 1.48504 * 109.47093 * 210.00291 * 23 21 19 26 26 H 1.48497 * 109.47085 * 329.99855 * 23 21 19 27 27 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 28 28 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 29 29 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 31 31 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 32 32 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 33 33 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 34 34 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 35 35 H 1.09005 * 117.49899 * 359.97438 * 11 9 7 36 36 H 1.08998 * 117.50216 * 144.99501 * 11 9 7 37 37 H 1.08993 * 112.84957 * 288.79989 * 14 12 9 38 38 H 1.08999 * 113.61511 * 334.56865 * 15 14 12 39 39 H 1.08995 * 113.61148 * 105.46936 * 15 14 12 40 40 H 1.08994 * 113.61103 * 270.88317 * 16 15 14 41 41 H 1.08999 * 113.60987 * 139.97729 * 16 15 14 42 42 H 1.08993 * 113.61895 * 254.53124 * 17 14 12 43 43 H 1.09004 * 113.61906 * 25.35281 * 17 14 12 44 44 H 0.97000 * 120.00390 * 95.00648 * 18 3 2 45 45 H 0.97001 * 120.00086 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 1 5.3408 5.1160 0.7298 11 6 6.5047 5.1222 -1.1975 12 6 7.4112 4.6868 -0.0441 13 1 8.0351 3.8064 -0.1984 14 6 8.0244 5.7858 0.8260 15 6 9.5249 5.5896 1.0996 16 6 9.2454 6.0661 2.5347 17 6 7.8023 5.5744 2.3329 18 7 1.6524 2.0974 1.2519 19 6 0.4155 2.6734 1.3688 20 1 -0.2743 2.6446 0.5384 21 6 0.0484 3.2944 2.5548 22 7 -1.1405 3.8476 2.6673 23 14 1.2419 3.3450 3.9909 24 1 2.0768 4.5695 3.8978 25 1 0.4813 3.3601 5.2663 26 1 2.1163 2.1454 3.9504 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8499 1.0378 -1.0960 33 1 3.9953 0.8312 0.6659 34 1 3.4409 3.5484 0.1316 35 1 6.5324 4.5282 -2.1110 36 1 6.3450 6.1914 -1.3364 37 1 7.7692 6.7886 0.4835 38 1 9.8475 4.5502 1.0396 39 1 10.1643 6.2656 0.5319 40 1 9.3253 7.1459 2.6596 41 1 9.7941 5.5093 3.2943 42 1 7.0510 6.2379 2.7609 43 1 7.6524 4.5308 2.6100 44 1 2.2718 2.1232 1.9979 45 1 -1.3972 4.2812 3.4962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698618342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:28 Heat of formation + Delta-G solvation = 2.559395 kcal Electronic energy + Delta-G solvation = -22172.380373 eV Core-core repulsion = 18997.968720 eV Total energy + Delta-G solvation = -3174.411653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.11319 -38.82115 -36.98292 -35.57758 -33.75746 -32.35517 -30.29239 -28.45752 -26.47969 -25.74649 -24.46704 -23.00464 -22.11805 -21.15595 -20.27647 -19.66798 -19.48666 -17.77315 -16.98408 -15.97158 -15.53909 -15.47050 -15.25617 -14.50748 -14.22243 -14.02454 -13.41856 -13.21933 -12.95594 -12.79175 -12.65406 -12.58249 -12.49597 -12.31279 -11.94486 -11.56210 -11.18423 -11.01936 -11.00074 -10.82079 -10.75878 -10.64101 -10.40644 -10.30612 -10.07398 -10.03509 -9.94762 -9.58090 -9.51164 -8.99985 -8.74274 -7.36884 -5.84011 -3.19977 2.67594 3.30876 3.36394 3.37711 3.41712 3.77781 4.39973 4.49934 4.52408 4.54137 4.71478 4.86522 4.91732 5.00901 5.17388 5.24554 5.28969 5.32741 5.44022 5.53516 5.60115 5.62675 5.64014 5.74412 5.76605 5.84342 5.87748 5.89356 5.91862 6.05103 6.06918 6.16942 6.26675 6.37223 6.46902 6.52365 6.57675 6.80277 6.93240 7.27455 7.84571 7.91951 8.34265 8.48737 9.12367 9.84812 10.04362 11.33656 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.004474 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.839863 B = 6256.371795 C = 7430.194943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.063 0.937 5 C 0.112 3.888 6 N -0.712 5.712 7 C 0.539 3.461 8 O -0.555 6.555 9 C -0.185 4.185 10 H 0.123 0.877 11 C -0.149 4.149 12 C -0.108 4.108 13 H 0.117 0.883 14 C -0.083 4.083 15 C -0.132 4.132 16 C -0.144 4.144 17 C -0.136 4.136 18 N -0.747 5.747 19 C -0.242 4.242 20 H 0.095 0.905 21 C 0.008 3.992 22 N -0.931 5.931 23 Si 0.879 3.121 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.278 1.278 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.411 0.589 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.073 2.858 -5.314 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.081 0.919 5 C -0.013 4.013 6 N -0.363 5.363 7 C 0.325 3.675 8 O -0.434 6.434 9 C -0.206 4.206 10 H 0.141 0.859 11 C -0.186 4.186 12 C -0.127 4.127 13 H 0.135 0.865 14 C -0.101 4.101 15 C -0.169 4.169 16 C -0.182 4.182 17 C -0.174 4.174 18 N -0.390 5.390 19 C -0.372 4.372 20 H 0.113 0.887 21 C -0.188 4.188 22 N -0.578 5.578 23 Si 0.709 3.291 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.247 0.753 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.349 2.290 -5.475 18.336 hybrid contribution 0.224 0.346 1.300 1.364 sum 17.574 2.636 -4.175 18.254 Atomic orbital electron populations 1.21779 0.95199 0.99714 1.03766 1.22040 0.97355 0.97881 1.00090 1.20545 0.89863 0.92958 0.90763 0.91930 1.21719 0.95516 0.82695 1.01349 1.45958 1.07059 1.10724 1.72567 1.19637 0.82361 0.89417 0.76061 1.90650 1.56294 1.46165 1.50300 1.22265 0.98120 0.95897 1.04353 0.85886 1.23053 1.02381 1.00930 0.92283 1.22368 0.90628 1.00392 0.99266 0.86527 1.22187 0.95866 0.97546 0.94500 1.22940 0.95690 1.01754 0.96563 1.22818 0.97262 1.00860 0.97246 1.22939 0.96844 1.02055 0.95529 1.42840 1.16927 1.67657 1.11604 1.19061 0.90836 1.27381 0.99899 0.88737 1.24645 0.96360 1.00335 0.97471 1.69687 1.19284 1.42083 1.26767 0.86648 0.81025 0.77773 0.83640 1.21130 1.21814 1.20393 0.89368 0.93872 0.94851 0.93565 0.92691 0.91529 0.91955 0.75292 0.88414 0.87931 0.89027 0.89922 0.91585 0.90335 0.91530 0.91476 0.89802 0.80528 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.18 37.15 0.34 -2.30 16 2 C -0.13 -2.22 5.61 -26.73 -0.15 -2.37 16 3 C 0.17 2.98 2.59 -67.93 -0.18 2.81 16 4 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 5 C 0.11 1.81 5.23 -4.04 -0.02 1.79 16 6 N -0.71 -11.30 5.39 -60.30 -0.32 -11.62 16 7 C 0.54 8.58 7.61 -10.98 -0.08 8.50 16 8 O -0.55 -10.43 16.26 5.55 0.09 -10.34 16 9 C -0.19 -2.35 5.71 -91.78 -0.52 -2.87 16 10 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 11 C -0.15 -1.57 9.92 -26.72 -0.27 -1.84 16 12 C -0.11 -1.22 5.06 -90.61 -0.46 -1.67 16 13 H 0.12 1.49 7.50 -51.93 -0.39 1.10 16 14 C -0.08 -0.79 3.88 -89.81 -0.35 -1.13 16 15 C -0.13 -1.14 7.63 -25.92 -0.20 -1.33 16 16 C -0.14 -1.23 8.08 -25.92 -0.21 -1.44 16 17 C -0.14 -1.37 7.45 -25.92 -0.19 -1.56 16 18 N -0.75 -16.01 4.31 -53.42 -0.23 -16.24 16 19 C -0.24 -6.20 8.24 -15.06 -0.12 -6.33 16 20 H 0.09 2.60 7.55 -52.49 -0.40 2.21 16 21 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 22 N -0.93 -27.85 13.97 55.49 0.78 -27.07 16 23 Si 0.88 21.25 27.74 -169.99 -4.71 16.53 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.47 6.52 56.52 0.37 -6.11 16 27 H 0.09 1.90 5.99 -51.93 -0.31 1.59 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.41 6.50 8.14 -40.82 -0.33 6.17 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.10 0.89 8.13 -51.93 -0.42 0.47 16 37 H 0.09 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.08 0.74 7.98 -51.93 -0.41 0.32 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 44 H 0.36 7.93 5.66 -40.82 -0.23 7.69 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -29.79 361.31 -9.46 -39.25 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -8.00 Total: 13.68 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.51 Total: -9.64 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.22 Total: -54.94 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.53 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.79 -9.46 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698618342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.809 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds