Wall clock time and date at job start Tue Mar 31 2020 01:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 H 1.08999 * 115.54372 * 34.27891 * 9 7 6 11 11 C 1.52994 * 117.50165 * 248.61437 * 9 7 6 12 12 C 1.52992 * 117.50315 * 179.97438 * 9 7 6 13 13 H 1.09006 * 117.49558 * 359.97438 * 12 9 7 14 14 C 1.53002 * 117.50022 * 214.98091 * 12 9 7 15 15 C 1.53782 * 113.61599 * 157.49361 * 14 12 9 16 16 C 1.53782 * 87.08254 * 220.01824 * 15 14 12 17 17 C 1.53778 * 113.61364 * 59.99602 * 14 12 9 18 18 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 19 19 C 1.36937 * 119.99934 * 274.99832 * 18 3 2 20 20 H 1.07998 * 120.00035 * 0.02562 * 19 18 3 21 21 C 1.38810 * 120.00229 * 180.02562 * 19 18 3 22 22 N 1.31614 * 120.00215 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99755 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47094 * 89.99844 * 23 21 19 25 25 H 1.48504 * 109.47093 * 210.00291 * 23 21 19 26 26 H 1.48497 * 109.47085 * 329.99855 * 23 21 19 27 27 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 28 28 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 29 29 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 31 31 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 32 32 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 33 33 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 34 34 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 35 35 H 1.09005 * 117.49899 * 359.97438 * 11 9 7 36 36 H 1.08998 * 117.50216 * 144.99501 * 11 9 7 37 37 H 1.08993 * 112.84957 * 288.79989 * 14 12 9 38 38 H 1.08999 * 113.61511 * 334.56865 * 15 14 12 39 39 H 1.08995 * 113.61148 * 105.46936 * 15 14 12 40 40 H 1.08994 * 113.61103 * 270.88317 * 16 15 14 41 41 H 1.08999 * 113.60987 * 139.97729 * 16 15 14 42 42 H 1.08993 * 113.61895 * 254.53124 * 17 14 12 43 43 H 1.09004 * 113.61906 * 25.35281 * 17 14 12 44 44 H 0.97000 * 120.00390 * 95.00648 * 18 3 2 45 45 H 0.97001 * 120.00086 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 1 5.3408 5.1160 0.7298 11 6 6.5047 5.1222 -1.1975 12 6 7.4112 4.6868 -0.0441 13 1 8.0351 3.8064 -0.1984 14 6 8.0244 5.7858 0.8260 15 6 9.5249 5.5896 1.0996 16 6 9.2454 6.0661 2.5347 17 6 7.8023 5.5744 2.3329 18 7 1.6524 2.0974 1.2519 19 6 0.4155 2.6734 1.3688 20 1 -0.2743 2.6446 0.5384 21 6 0.0484 3.2944 2.5548 22 7 -1.1405 3.8476 2.6673 23 14 1.2419 3.3450 3.9909 24 1 2.0768 4.5695 3.8978 25 1 0.4813 3.3601 5.2663 26 1 2.1163 2.1454 3.9504 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8499 1.0378 -1.0960 33 1 3.9953 0.8312 0.6659 34 1 3.4409 3.5484 0.1316 35 1 6.5324 4.5282 -2.1110 36 1 6.3450 6.1914 -1.3364 37 1 7.7692 6.7886 0.4835 38 1 9.8475 4.5502 1.0396 39 1 10.1643 6.2656 0.5319 40 1 9.3253 7.1459 2.6596 41 1 9.7941 5.5093 3.2943 42 1 7.0510 6.2379 2.7609 43 1 7.6524 4.5308 2.6100 44 1 2.2718 2.1232 1.9979 45 1 -1.3972 4.2812 3.4962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698618342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:28 Heat of formation + Delta-G solvation = -14.981382 kcal Electronic energy + Delta-G solvation = -22173.140998 eV Core-core repulsion = 18997.968720 eV Total energy + Delta-G solvation = -3175.172278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20034 -39.78704 -38.45425 -36.56255 -35.25959 -34.15617 -32.09370 -29.91192 -27.36168 -26.46507 -25.79838 -24.66850 -23.41621 -22.01728 -21.77254 -20.92706 -20.26016 -19.59325 -18.22287 -17.15468 -17.05256 -16.40283 -16.24436 -16.09072 -15.62960 -15.36888 -14.72689 -14.67214 -14.49405 -14.30812 -13.99413 -13.42730 -13.32789 -13.28797 -13.10652 -12.92972 -12.85973 -12.69747 -12.40258 -12.10632 -11.92056 -11.86226 -11.64447 -11.53824 -11.44050 -11.39247 -11.03138 -10.90272 -10.88665 -10.62720 -10.06023 -9.30478 -7.96295 -5.28376 1.38495 1.40619 1.46557 1.49338 2.19871 2.50682 2.82462 3.34809 3.53228 3.60436 3.68067 3.76284 3.86995 3.94322 3.96401 4.12530 4.17216 4.27928 4.30590 4.43187 4.50748 4.53315 4.69980 4.80239 4.81597 4.87593 4.88492 4.89579 5.03736 5.05360 5.09458 5.10593 5.11712 5.18074 5.26450 5.38588 5.44514 5.53026 5.65205 5.71200 5.86347 6.26356 6.57037 7.12009 7.22684 7.86717 8.05411 9.24778 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.004474 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.839863 B = 6256.371795 C = 7430.194943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.169 3.831 4 H 0.061 0.939 5 C 0.120 3.880 6 N -0.713 5.713 7 C 0.537 3.463 8 O -0.587 6.587 9 C -0.200 4.200 10 H 0.131 0.869 11 C -0.131 4.131 12 C -0.104 4.104 13 H 0.098 0.902 14 C -0.079 4.079 15 C -0.130 4.130 16 C -0.139 4.139 17 C -0.145 4.145 18 N -0.746 5.746 19 C -0.206 4.206 20 H 0.070 0.930 21 C -0.057 4.057 22 N -0.982 5.982 23 Si 0.939 3.061 24 H -0.277 1.277 25 H -0.305 1.305 26 H -0.264 1.264 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.411 0.589 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.362 0.638 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.174 3.155 -6.047 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.079 0.921 5 C -0.005 4.005 6 N -0.363 5.363 7 C 0.325 3.675 8 O -0.469 6.469 9 C -0.221 4.221 10 H 0.149 0.851 11 C -0.168 4.168 12 C -0.123 4.123 13 H 0.116 0.884 14 C -0.097 4.097 15 C -0.167 4.167 16 C -0.176 4.176 17 C -0.182 4.182 18 N -0.390 5.390 19 C -0.337 4.337 20 H 0.088 0.912 21 C -0.249 4.249 22 N -0.633 5.633 23 Si 0.768 3.232 24 H -0.203 1.203 25 H -0.232 1.232 26 H -0.189 1.189 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.248 0.752 35 H 0.112 0.888 36 H 0.146 0.854 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.195 0.805 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.492 2.559 -6.241 20.626 hybrid contribution -0.438 0.165 1.403 1.479 sum 19.054 2.724 -4.838 19.846 Atomic orbital electron populations 1.21689 0.96237 1.00484 1.01643 1.21970 0.96240 0.97036 1.01641 1.20686 0.91084 0.93336 0.88793 0.92125 1.21604 0.93861 0.83058 1.01930 1.45992 1.07282 1.10559 1.72476 1.20152 0.81904 0.90459 0.74999 1.90631 1.56910 1.47479 1.51859 1.22256 0.99192 0.94226 1.06441 0.85149 1.23176 1.00309 1.02102 0.91245 1.22364 0.89510 1.00400 1.00045 0.88362 1.22241 0.96316 0.97576 0.93559 1.22924 0.95299 1.01707 0.96806 1.22825 0.95900 1.01661 0.97230 1.22946 0.98037 1.00996 0.96239 1.42826 1.15402 1.67689 1.13058 1.18973 0.91395 1.24905 0.98443 0.91246 1.25262 0.97869 1.01515 1.00226 1.69845 1.21600 1.44616 1.27256 0.85656 0.79073 0.78440 0.79996 1.20347 1.23219 1.18890 0.93526 0.93815 0.92728 0.90266 0.92825 0.90039 0.92548 0.75228 0.88753 0.85379 0.87392 0.90733 0.90089 0.88958 0.91466 0.91485 0.91706 0.80492 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 9.18 71.98 0.66 -4.31 16 2 C -0.13 -4.01 5.61 30.59 0.17 -3.84 16 3 C 0.17 5.72 2.59 44.99 0.12 5.84 16 4 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 5 C 0.12 3.66 5.23 86.38 0.45 4.11 16 6 N -0.71 -21.64 5.39 -463.07 -2.49 -24.13 16 7 C 0.54 16.52 7.61 87.66 0.67 17.19 16 8 O -0.59 -21.67 16.26 -3.04 -0.05 -21.72 16 9 C -0.20 -4.78 5.71 -11.54 -0.07 -4.84 16 10 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 11 C -0.13 -2.45 9.92 30.60 0.30 -2.15 16 12 C -0.10 -2.20 5.06 -10.79 -0.05 -2.25 16 13 H 0.10 2.46 7.50 -2.38 -0.02 2.44 16 14 C -0.08 -1.33 3.88 -10.27 -0.04 -1.37 16 15 C -0.13 -1.97 7.63 31.12 0.24 -1.73 16 16 C -0.14 -2.09 8.08 31.12 0.25 -1.83 16 17 C -0.14 -2.71 7.45 31.12 0.23 -2.48 16 18 N -0.75 -31.30 4.31 -322.93 -1.39 -32.69 16 19 C -0.21 -10.62 8.24 84.03 0.69 -9.93 16 20 H 0.07 3.91 7.55 -2.91 -0.02 3.89 16 21 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 22 N -0.98 -60.32 13.97 21.65 0.30 -60.01 16 23 Si 0.94 44.13 27.74 68.60 1.90 46.04 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 26 H -0.26 -11.58 6.52 99.48 0.65 -10.94 16 27 H 0.05 2.01 5.99 -2.39 -0.01 1.99 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.41 12.48 8.14 -92.71 -0.75 11.72 16 35 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.13 1.76 8.13 -2.39 -0.02 1.75 16 37 H 0.11 1.50 8.07 -2.39 -0.02 1.48 16 38 H 0.07 1.25 7.98 -2.39 -0.02 1.23 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 44 H 0.36 15.31 5.66 -92.71 -0.52 14.79 16 45 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -64.84 361.31 1.99 -62.85 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: -0.37 Total: 39.99 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 4.09 Total: -10.32 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -3.58 Total: -116.83 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.72 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.90 Total: 46.04 kcal Total: -64.84 1.99 -62.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698618342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.870 kcal (2) G-P(sol) polarization free energy of solvation -64.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds