Wall clock time and date at job start Tue Mar 31 2020 01:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47091 * 2 1 4 4 H 1.08999 * 109.47409 * 54.99143 * 3 2 1 5 5 C 1.53005 * 109.47474 * 174.99734 * 3 2 1 6 6 N 1.46498 * 109.47132 * 174.99652 * 5 3 2 7 7 C 1.34780 * 119.99609 * 179.97438 * 6 5 3 8 8 O 1.21277 * 120.00116 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99736 * 180.02562 * 7 6 5 10 10 H 1.08997 * 115.55139 * 34.27380 * 9 7 6 11 11 C 1.52998 * 117.49635 * 248.60470 * 9 7 6 12 12 C 1.52997 * 60.00162 * 252.51086 * 11 9 7 13 13 H 1.09004 * 117.49487 * 107.48887 * 12 11 9 14 14 C 1.53000 * 117.49665 * 252.50864 * 12 11 9 15 15 C 1.53785 * 113.61176 * 226.11628 * 14 12 11 16 16 C 1.53786 * 87.08063 * 220.02355 * 15 14 12 17 17 C 1.53780 * 87.08114 * 25.43373 * 16 15 14 18 18 N 1.46504 * 109.47009 * 294.99306 * 3 2 1 19 19 C 1.36943 * 119.99781 * 85.00152 * 18 3 2 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 3 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 3 22 22 N 1.31622 * 119.99400 * 179.72313 * 21 19 18 23 23 Si 1.86800 * 120.00144 * 359.72086 * 21 19 18 24 24 H 1.48506 * 109.46719 * 90.00417 * 23 21 19 25 25 H 1.48501 * 109.46793 * 210.00071 * 23 21 19 26 26 H 1.48489 * 109.47333 * 330.00315 * 23 21 19 27 27 H 1.09002 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47765 * 300.00678 * 1 2 3 29 29 H 1.08999 * 109.46651 * 60.00679 * 1 2 3 30 30 H 1.08996 * 109.47765 * 239.99322 * 2 1 3 31 31 H 1.09008 * 109.46855 * 119.99404 * 2 1 3 32 32 H 1.09004 * 109.46593 * 294.99674 * 5 3 2 33 33 H 1.08997 * 109.46658 * 54.99267 * 5 3 2 34 34 H 0.96992 * 120.00426 * 359.97438 * 6 5 3 35 35 H 1.09004 * 117.49808 * 0.02562 * 11 9 7 36 36 H 1.09000 * 117.49961 * 144.99393 * 11 9 7 37 37 H 1.08990 * 112.84997 * 357.42767 * 14 12 11 38 38 H 1.09004 * 113.61464 * 334.56808 * 15 14 12 39 39 H 1.08999 * 113.60861 * 105.47467 * 15 14 12 40 40 H 1.09004 * 113.61353 * 270.89038 * 16 15 14 41 41 H 1.09000 * 113.61395 * 139.98239 * 16 15 14 42 42 H 1.09002 * 113.61565 * 220.01614 * 17 16 15 43 43 H 1.09002 * 113.69251 * 89.12857 * 17 16 15 44 44 H 0.97000 * 120.00410 * 265.00478 * 18 3 2 45 45 H 0.97009 * 119.99492 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8169 0.0059 7 6 5.3856 3.0631 0.0869 8 8 6.1633 2.1486 0.2594 9 6 5.8980 4.4750 -0.0358 10 1 5.2511 5.2477 0.3795 11 6 6.7058 4.8271 -1.2866 12 6 7.4096 4.6892 0.0649 13 1 8.0334 3.8088 0.2199 14 6 7.8979 5.9718 0.7412 15 6 9.3322 5.8728 1.2870 16 6 8.8379 6.6646 2.5091 17 6 7.4360 6.1125 2.2013 18 7 1.6525 2.0974 -1.2519 19 6 0.4157 2.6734 -1.3690 20 1 -0.2743 2.6445 -0.5386 21 6 0.0464 3.2888 -2.5572 22 7 -1.1445 3.8377 -2.6715 23 14 1.2395 3.3382 -3.9936 24 1 1.0409 2.1366 -4.8435 25 1 0.9934 4.5608 -4.7997 26 1 2.6325 3.3562 -3.4797 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8498 1.0378 1.0962 33 1 3.9954 0.8311 -0.6657 34 1 3.4410 3.5483 -0.1317 35 1 6.8662 4.0376 -2.0209 36 1 6.5903 5.8314 -1.6941 37 1 7.7189 6.8624 0.1389 38 1 9.6405 4.8541 1.5224 39 1 10.0660 6.4101 0.6862 40 1 8.9172 7.7453 2.3904 41 1 9.2489 6.3103 3.4544 42 1 6.6390 6.8433 2.3387 43 1 7.2245 5.1594 2.6861 44 1 2.2720 2.1230 -1.9979 45 1 -1.4024 4.2681 -3.5018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698618345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:32 Heat of formation + Delta-G solvation = 2.597431 kcal Electronic energy + Delta-G solvation = -22115.527892 eV Core-core repulsion = 18941.117888 eV Total energy + Delta-G solvation = -3174.410004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.11370 -38.83296 -36.98200 -35.57440 -33.75194 -32.35220 -30.29051 -28.45483 -26.49071 -25.77670 -24.46291 -23.00617 -22.10778 -21.15306 -20.27558 -19.66887 -19.49815 -17.78671 -16.96411 -15.98449 -15.56365 -15.49156 -15.21464 -14.55227 -14.23236 -13.92995 -13.48873 -13.21539 -12.92759 -12.79966 -12.66910 -12.61310 -12.47842 -12.31059 -11.95727 -11.57646 -11.17694 -11.02186 -11.00539 -10.83491 -10.72837 -10.66567 -10.42146 -10.32120 -10.07154 -10.01168 -9.95473 -9.57768 -9.51041 -8.99910 -8.73679 -7.36634 -5.83803 -3.19768 2.68908 3.32098 3.36287 3.36629 3.42105 3.80403 4.38713 4.48352 4.52586 4.52854 4.69251 4.87264 4.91567 4.99738 5.19468 5.22238 5.29143 5.32432 5.43126 5.51077 5.59019 5.60589 5.66681 5.71854 5.77025 5.79242 5.87698 5.90055 5.92582 6.03198 6.07066 6.16324 6.26782 6.34964 6.46976 6.52461 6.57818 6.80757 6.93118 7.27694 7.85244 7.92128 8.34484 8.49318 9.12572 9.85049 10.04572 11.33839 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.004039 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.098347 B = 6931.424401 C = 7737.836948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.062 0.938 5 C 0.112 3.888 6 N -0.712 5.712 7 C 0.539 3.461 8 O -0.555 6.555 9 C -0.184 4.184 10 H 0.123 0.877 11 C -0.150 4.150 12 C -0.108 4.108 13 H 0.117 0.883 14 C -0.083 4.083 15 C -0.133 4.133 16 C -0.145 4.145 17 C -0.135 4.135 18 N -0.747 5.747 19 C -0.242 4.242 20 H 0.095 0.905 21 C 0.008 3.992 22 N -0.931 5.931 23 Si 0.880 3.120 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.277 1.277 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.411 0.589 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.887 3.173 7.796 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.059 3.941 4 H 0.080 0.920 5 C -0.013 4.013 6 N -0.363 5.363 7 C 0.325 3.675 8 O -0.435 6.435 9 C -0.205 4.205 10 H 0.141 0.859 11 C -0.187 4.187 12 C -0.127 4.127 13 H 0.135 0.865 14 C -0.101 4.101 15 C -0.170 4.170 16 C -0.182 4.182 17 C -0.172 4.172 18 N -0.390 5.390 19 C -0.372 4.372 20 H 0.112 0.888 21 C -0.189 4.189 22 N -0.578 5.578 23 Si 0.710 3.290 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.203 1.203 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.247 0.753 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.163 2.608 7.965 19.100 hybrid contribution 0.225 0.357 -1.289 1.356 sum 17.388 2.965 6.677 18.861 Atomic orbital electron populations 1.21781 0.95195 0.99716 1.03779 1.22037 0.97356 0.97854 1.00098 1.20544 0.89851 0.92973 0.90753 0.91980 1.21720 0.95517 0.82712 1.01332 1.45951 1.07129 1.10737 1.72443 1.19638 0.82368 0.89430 0.76043 1.90647 1.56297 1.46240 1.50266 1.22242 0.96040 0.96133 1.06092 0.85945 1.23062 1.01821 1.03127 0.90715 1.22365 0.92265 0.99383 0.98651 0.86542 1.22189 0.96411 0.96055 0.95449 1.22947 0.95995 1.00860 0.97208 1.22820 0.97123 0.99815 0.98433 1.22927 0.96820 1.01548 0.95918 1.42832 1.16814 1.67655 1.11727 1.19059 0.90540 1.27820 0.99765 0.88757 1.24653 0.96331 1.00388 0.97486 1.69697 1.19129 1.42367 1.26640 0.86627 0.81155 0.77328 0.83850 1.21197 1.21853 1.20312 0.94850 0.93878 0.89352 0.92678 0.93555 0.91513 0.91998 0.75302 0.88413 0.87893 0.89030 0.89909 0.91580 0.90342 0.91537 0.91528 0.89820 0.80514 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.18 37.16 0.34 -2.30 16 2 C -0.13 -2.21 5.61 -26.73 -0.15 -2.36 16 3 C 0.17 2.98 2.59 -67.93 -0.18 2.81 16 4 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 5 C 0.11 1.81 5.23 -4.04 -0.02 1.79 16 6 N -0.71 -11.39 5.39 -60.29 -0.32 -11.72 16 7 C 0.54 8.64 7.61 -10.98 -0.08 8.56 16 8 O -0.56 -10.48 16.26 5.56 0.09 -10.39 16 9 C -0.18 -2.35 5.71 -91.77 -0.52 -2.87 16 10 H 0.12 1.40 8.14 -51.93 -0.42 0.97 16 11 C -0.15 -1.73 9.92 -26.73 -0.27 -2.00 16 12 C -0.11 -1.22 5.06 -90.62 -0.46 -1.68 16 13 H 0.12 1.49 7.50 -51.93 -0.39 1.10 16 14 C -0.08 -0.76 3.88 -89.80 -0.35 -1.11 16 15 C -0.13 -1.10 7.64 -25.91 -0.20 -1.29 16 16 C -0.14 -1.12 8.08 -25.92 -0.21 -1.33 16 17 C -0.13 -1.21 7.45 -25.92 -0.19 -1.40 16 18 N -0.75 -16.00 4.31 -53.42 -0.23 -16.23 16 19 C -0.24 -6.20 8.24 -15.06 -0.12 -6.33 16 20 H 0.09 2.60 7.55 -52.49 -0.40 2.20 16 21 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 22 N -0.93 -27.86 13.97 55.49 0.78 -27.09 16 23 Si 0.88 21.24 27.73 -169.99 -4.71 16.53 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.91 5.99 -51.93 -0.31 1.60 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.41 6.58 8.14 -40.82 -0.33 6.25 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.10 1.01 8.13 -51.93 -0.42 0.59 16 37 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.08 0.71 7.98 -51.93 -0.41 0.30 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.84 8.10 -51.93 -0.42 0.41 16 44 H 0.36 7.92 5.66 -40.82 -0.23 7.69 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 361.32 15.07 5.44 5.44 Total: -1.00 -29.82 361.32 -9.46 -39.28 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -8.00 Total: 13.58 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -2.51 Total: -9.41 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.22 Total: -55.03 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.53 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.82 -9.46 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698618345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.877 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds