Wall clock time and date at job start Tue Mar 31 2020 01:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47091 * 2 1 4 4 H 1.08999 * 109.47409 * 54.99143 * 3 2 1 5 5 C 1.53005 * 109.47474 * 174.99734 * 3 2 1 6 6 N 1.46498 * 109.47132 * 174.99652 * 5 3 2 7 7 C 1.34780 * 119.99609 * 179.97438 * 6 5 3 8 8 O 1.21277 * 120.00116 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99736 * 180.02562 * 7 6 5 10 10 H 1.08997 * 115.55139 * 34.27380 * 9 7 6 11 11 C 1.52998 * 117.49635 * 248.60470 * 9 7 6 12 12 C 1.52997 * 60.00162 * 252.51086 * 11 9 7 13 13 H 1.09004 * 117.49487 * 107.48887 * 12 11 9 14 14 C 1.53000 * 117.49665 * 252.50864 * 12 11 9 15 15 C 1.53785 * 113.61176 * 226.11628 * 14 12 11 16 16 C 1.53786 * 87.08063 * 220.02355 * 15 14 12 17 17 C 1.53780 * 87.08114 * 25.43373 * 16 15 14 18 18 N 1.46504 * 109.47009 * 294.99306 * 3 2 1 19 19 C 1.36943 * 119.99781 * 85.00152 * 18 3 2 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 3 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 3 22 22 N 1.31622 * 119.99400 * 179.72313 * 21 19 18 23 23 Si 1.86800 * 120.00144 * 359.72086 * 21 19 18 24 24 H 1.48506 * 109.46719 * 90.00417 * 23 21 19 25 25 H 1.48501 * 109.46793 * 210.00071 * 23 21 19 26 26 H 1.48489 * 109.47333 * 330.00315 * 23 21 19 27 27 H 1.09002 * 109.46822 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47765 * 300.00678 * 1 2 3 29 29 H 1.08999 * 109.46651 * 60.00679 * 1 2 3 30 30 H 1.08996 * 109.47765 * 239.99322 * 2 1 3 31 31 H 1.09008 * 109.46855 * 119.99404 * 2 1 3 32 32 H 1.09004 * 109.46593 * 294.99674 * 5 3 2 33 33 H 1.08997 * 109.46658 * 54.99267 * 5 3 2 34 34 H 0.96992 * 120.00426 * 359.97438 * 6 5 3 35 35 H 1.09004 * 117.49808 * 0.02562 * 11 9 7 36 36 H 1.09000 * 117.49961 * 144.99393 * 11 9 7 37 37 H 1.08990 * 112.84997 * 357.42767 * 14 12 11 38 38 H 1.09004 * 113.61464 * 334.56808 * 15 14 12 39 39 H 1.08999 * 113.60861 * 105.47467 * 15 14 12 40 40 H 1.09004 * 113.61353 * 270.89038 * 16 15 14 41 41 H 1.09000 * 113.61395 * 139.98239 * 16 15 14 42 42 H 1.09002 * 113.61565 * 220.01614 * 17 16 15 43 43 H 1.09002 * 113.69251 * 89.12857 * 17 16 15 44 44 H 0.97000 * 120.00410 * 265.00478 * 18 3 2 45 45 H 0.97009 * 119.99492 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8169 0.0059 7 6 5.3856 3.0631 0.0869 8 8 6.1633 2.1486 0.2594 9 6 5.8980 4.4750 -0.0358 10 1 5.2511 5.2477 0.3795 11 6 6.7058 4.8271 -1.2866 12 6 7.4096 4.6892 0.0649 13 1 8.0334 3.8088 0.2199 14 6 7.8979 5.9718 0.7412 15 6 9.3322 5.8728 1.2870 16 6 8.8379 6.6646 2.5091 17 6 7.4360 6.1125 2.2013 18 7 1.6525 2.0974 -1.2519 19 6 0.4157 2.6734 -1.3690 20 1 -0.2743 2.6445 -0.5386 21 6 0.0464 3.2888 -2.5572 22 7 -1.1445 3.8377 -2.6715 23 14 1.2395 3.3382 -3.9936 24 1 1.0409 2.1366 -4.8435 25 1 0.9934 4.5608 -4.7997 26 1 2.6325 3.3562 -3.4797 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5137 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8498 1.0378 1.0962 33 1 3.9954 0.8311 -0.6657 34 1 3.4410 3.5483 -0.1317 35 1 6.8662 4.0376 -2.0209 36 1 6.5903 5.8314 -1.6941 37 1 7.7189 6.8624 0.1389 38 1 9.6405 4.8541 1.5224 39 1 10.0660 6.4101 0.6862 40 1 8.9172 7.7453 2.3904 41 1 9.2489 6.3103 3.4544 42 1 6.6390 6.8433 2.3387 43 1 7.2245 5.1594 2.6861 44 1 2.2720 2.1230 -1.9979 45 1 -1.4024 4.2681 -3.5018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698618345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:31 Heat of formation + Delta-G solvation = -14.953511 kcal Electronic energy + Delta-G solvation = -22116.288957 eV Core-core repulsion = 18941.117888 eV Total energy + Delta-G solvation = -3175.171069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20307 -39.77698 -38.45057 -36.56588 -35.25813 -34.15156 -32.08920 -29.91064 -27.34988 -26.44151 -25.79766 -24.67791 -23.41858 -22.01788 -21.76671 -20.92312 -20.24254 -19.59773 -18.21631 -17.18923 -17.02890 -16.41678 -16.24538 -15.92699 -15.82050 -15.25527 -14.72616 -14.69994 -14.47874 -14.31189 -13.98316 -13.43921 -13.30173 -13.28091 -13.11737 -12.92960 -12.88411 -12.68994 -12.32934 -12.12035 -11.92816 -11.87229 -11.61452 -11.52809 -11.42688 -11.36967 -11.04843 -10.89951 -10.87869 -10.62624 -10.05938 -9.30009 -7.95661 -5.27892 1.39667 1.41830 1.48052 1.48999 2.18572 2.51777 2.82961 3.36144 3.52992 3.61492 3.68028 3.76881 3.87134 3.94898 3.98457 4.12187 4.16849 4.26589 4.30870 4.43263 4.51813 4.53608 4.70005 4.80412 4.80586 4.88339 4.90522 4.92315 5.01810 5.05678 5.10939 5.12572 5.13430 5.18325 5.25929 5.40411 5.44717 5.53249 5.67123 5.71526 5.86758 6.26898 6.56902 7.12633 7.22425 7.87205 8.06042 9.25368 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.004039 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.098347 B = 6931.424401 C = 7737.836948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.169 3.831 4 H 0.059 0.941 5 C 0.120 3.880 6 N -0.713 5.713 7 C 0.536 3.464 8 O -0.587 6.587 9 C -0.195 4.195 10 H 0.138 0.862 11 C -0.145 4.145 12 C -0.098 4.098 13 H 0.098 0.902 14 C -0.081 4.081 15 C -0.133 4.133 16 C -0.138 4.138 17 C -0.139 4.139 18 N -0.746 5.746 19 C -0.206 4.206 20 H 0.069 0.931 21 C -0.059 4.059 22 N -0.983 5.983 23 Si 0.941 3.059 24 H -0.290 1.290 25 H -0.301 1.301 26 H -0.253 1.253 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.411 0.589 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.363 0.637 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.971 3.438 8.294 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.077 0.923 5 C -0.005 4.005 6 N -0.363 5.363 7 C 0.324 3.676 8 O -0.469 6.469 9 C -0.216 4.216 10 H 0.156 0.844 11 C -0.182 4.182 12 C -0.117 4.117 13 H 0.116 0.884 14 C -0.099 4.099 15 C -0.170 4.170 16 C -0.176 4.176 17 C -0.176 4.176 18 N -0.390 5.390 19 C -0.337 4.337 20 H 0.087 0.913 21 C -0.250 4.250 22 N -0.634 5.634 23 Si 0.771 3.229 24 H -0.217 1.217 25 H -0.229 1.229 26 H -0.178 1.178 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.248 0.752 35 H 0.105 0.895 36 H 0.144 0.856 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.196 0.804 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.292 2.847 8.498 21.272 hybrid contribution -0.432 0.179 -1.315 1.396 sum 18.860 3.026 7.183 20.407 Atomic orbital electron populations 1.21691 0.96280 1.00471 1.01626 1.21967 0.96196 0.96998 1.01701 1.20680 0.91053 0.93359 0.88780 0.92251 1.21612 0.93882 0.83056 1.01936 1.45988 1.07342 1.10605 1.72343 1.20160 0.81922 0.90482 0.75003 1.90629 1.56918 1.47582 1.51761 1.22273 0.97162 0.94429 1.07709 0.84409 1.23167 1.00838 1.03914 0.90271 1.22354 0.90925 0.99774 0.98669 0.88397 1.22253 0.96938 0.95290 0.95414 1.22947 0.95747 1.00755 0.97585 1.22820 0.95947 1.00465 0.98338 1.22921 0.97832 1.01093 0.95767 1.42810 1.15287 1.67663 1.13193 1.18965 0.91130 1.25319 0.98287 0.91334 1.25288 0.97878 1.01567 1.00291 1.69858 1.21471 1.44902 1.27154 0.85613 0.80345 0.76378 0.80578 1.21741 1.22867 1.17816 0.92734 0.93873 0.93519 0.92674 0.90294 0.90097 0.92443 0.75238 0.89534 0.85616 0.87648 0.90703 0.90455 0.89055 0.91277 0.91015 0.91294 0.80433 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 9.18 71.98 0.66 -4.31 16 2 C -0.13 -3.98 5.61 30.59 0.17 -3.81 16 3 C 0.17 5.72 2.59 44.99 0.12 5.83 16 4 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 5 C 0.12 3.64 5.23 86.38 0.45 4.09 16 6 N -0.71 -21.67 5.39 -463.05 -2.49 -24.17 16 7 C 0.54 16.54 7.61 87.66 0.67 17.20 16 8 O -0.59 -21.72 16.26 -3.02 -0.05 -21.77 16 9 C -0.19 -4.65 5.71 -11.54 -0.07 -4.71 16 10 H 0.14 2.84 8.14 -2.39 -0.02 2.82 16 11 C -0.14 -3.04 9.92 30.59 0.30 -2.74 16 12 C -0.10 -2.08 5.06 -10.79 -0.05 -2.14 16 13 H 0.10 2.46 7.50 -2.39 -0.02 2.45 16 14 C -0.08 -1.30 3.88 -10.26 -0.04 -1.34 16 15 C -0.13 -1.93 7.64 31.12 0.24 -1.69 16 16 C -0.14 -1.84 8.08 31.12 0.25 -1.59 16 17 C -0.14 -2.24 7.45 31.12 0.23 -2.01 16 18 N -0.75 -31.13 4.31 -322.93 -1.39 -32.52 16 19 C -0.21 -10.60 8.24 84.03 0.69 -9.90 16 20 H 0.07 3.86 7.55 -2.91 -0.02 3.84 16 21 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 22 N -0.98 -60.36 13.97 21.65 0.30 -60.05 16 23 Si 0.94 43.98 27.73 68.60 1.90 45.88 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.25 -10.67 6.52 99.48 0.65 -10.03 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 2.01 5.99 -2.39 -0.01 1.99 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.41 12.51 8.14 -92.71 -0.75 11.75 16 35 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.13 2.07 8.13 -2.39 -0.02 2.05 16 37 H 0.11 1.45 8.07 -2.39 -0.02 1.43 16 38 H 0.07 1.20 7.98 -2.38 -0.02 1.18 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 44 H 0.36 15.19 5.66 -92.71 -0.53 14.67 16 45 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -64.80 361.32 1.99 -62.81 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -0.37 Total: 39.74 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.09 Total: -9.92 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -3.58 Total: -116.74 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.90 Total: 45.88 kcal Total: -64.80 1.99 -62.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698618345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.856 kcal (2) G-P(sol) polarization free energy of solvation -64.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds