Wall clock time and date at job start Tue Mar 31 2020 02:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47645 * 2 1 4 4 N 1.46493 * 109.47490 * 180.02562 * 3 2 1 5 5 C 1.36936 * 120.00152 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99665 * 0.02562 * 5 4 3 7 7 C 1.38814 * 120.00168 * 180.02562 * 5 4 3 8 8 N 1.31619 * 119.99652 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47502 * 59.99890 * 9 7 5 11 11 H 1.48501 * 109.47189 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47008 * 299.99738 * 9 7 5 13 13 N 1.46504 * 109.47499 * 120.00448 * 2 1 3 14 14 C 1.34777 * 119.99159 * 304.29203 * 13 2 1 15 15 O 1.21283 * 120.00714 * 354.98928 * 14 13 2 16 16 C 1.50701 * 119.99609 * 174.98998 * 14 13 2 17 17 C 1.53006 * 109.47090 * 180.02562 * 16 14 13 18 18 C 1.53776 * 113.61778 * 85.86242 * 17 16 14 19 19 C 1.54049 * 86.98619 * 140.01771 * 18 17 16 20 20 C 1.53784 * 113.60987 * 183.47167 * 17 16 14 21 21 C 1.53005 * 109.47092 * 239.99981 * 2 1 3 22 22 C 1.53001 * 117.49692 * 12.73923 * 21 2 1 23 23 C 1.53004 * 117.49920 * 304.07828 * 21 2 1 24 24 H 1.09000 * 109.46753 * 299.99652 * 1 2 3 25 25 H 1.08996 * 109.46952 * 59.99726 * 1 2 3 26 26 H 1.08996 * 109.47146 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46828 * 300.00479 * 3 2 1 28 28 H 1.09000 * 109.46497 * 59.99871 * 3 2 1 29 29 H 0.96999 * 119.99998 * 359.97438 * 4 3 2 30 30 H 0.97002 * 119.99151 * 179.97438 * 8 7 5 31 31 H 0.96993 * 120.00227 * 124.28985 * 13 2 1 32 32 H 1.09002 * 109.47479 * 59.99765 * 16 14 13 33 33 H 1.09001 * 109.47120 * 299.99605 * 16 14 13 34 34 H 1.08996 * 112.84529 * 314.65935 * 17 16 14 35 35 H 1.09002 * 113.61367 * 254.61318 * 18 17 16 36 36 H 1.09004 * 113.61355 * 25.51572 * 18 17 16 37 37 H 1.09002 * 113.62045 * 220.01986 * 19 18 17 38 38 H 1.08998 * 113.61228 * 89.11941 * 19 18 17 39 39 H 1.08998 * 113.61902 * 334.47569 * 20 17 16 40 40 H 1.08997 * 113.61280 * 105.30463 * 20 17 16 41 41 H 1.09003 * 115.55008 * 158.40878 * 21 2 1 42 42 H 1.08997 * 117.49979 * 0.02562 * 22 21 2 43 43 H 1.09003 * 117.49947 * 145.02271 * 22 21 2 44 44 H 1.08992 * 117.49863 * 214.97988 * 23 21 2 45 45 H 1.08997 * 117.49607 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1898 2.6283 -0.0002 6 1 3.6498 3.5636 0.0010 7 6 5.5779 2.6282 -0.0013 8 7 6.2359 1.4883 -0.0023 9 14 6.5119 4.2460 0.0000 10 1 6.1542 5.0232 1.2137 11 1 7.9719 3.9746 -0.0009 12 1 6.1523 5.0261 -1.2112 13 7 2.0184 -0.6907 1.1961 14 6 1.6230 -0.2828 2.4183 15 8 0.9366 0.7104 2.5336 16 6 2.0338 -1.0610 3.6418 17 6 1.4566 -0.3906 4.8902 18 6 0.0231 -0.8373 5.2223 19 6 0.4515 -0.8330 6.7020 20 6 1.8889 -1.0611 6.2049 21 6 2.0400 -0.7213 -1.2493 22 6 1.0274 -1.0157 -2.3578 23 6 1.5585 -2.1546 -1.4836 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 3.9900 0.6024 -0.0006 30 1 7.2059 1.4884 -0.0034 31 1 2.6262 -1.4414 1.1084 32 1 3.1214 -1.0826 3.7104 33 1 1.6541 -2.0801 3.5686 34 1 1.5875 0.6915 4.8883 35 1 -0.7335 -0.0900 4.9832 36 1 -0.2245 -1.8285 4.8423 37 1 0.0501 -1.6687 7.2753 38 1 0.3075 0.1281 7.1955 39 1 2.1504 -2.1133 6.0931 40 1 2.6384 -0.4950 6.7579 41 1 3.0588 -0.4771 -1.5501 42 1 -0.0020 -0.6952 -2.1973 43 1 1.3801 -0.9657 -3.3880 44 1 2.2604 -2.8531 -1.9389 45 1 0.8781 -2.5834 -0.7479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698643424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:37 Heat of formation + Delta-G solvation = 14.063110 kcal Electronic energy + Delta-G solvation = -23043.056277 eV Core-core repulsion = 19869.143463 eV Total energy + Delta-G solvation = -3173.912814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.11937 -38.77347 -37.32774 -34.58656 -33.34363 -31.50692 -30.25336 -29.09541 -25.83615 -25.55472 -24.08602 -23.03463 -22.28431 -22.01300 -19.91852 -19.28202 -18.67037 -17.11485 -17.01264 -15.68476 -15.59006 -15.09773 -14.89855 -14.53655 -14.20418 -13.96963 -13.40134 -13.31534 -12.82323 -12.58379 -12.43158 -12.23036 -12.02664 -11.87641 -11.75003 -11.48287 -11.20502 -10.99422 -10.76411 -10.76105 -10.68534 -10.57882 -10.25652 -10.15485 -10.10635 -10.08046 -9.76699 -9.61365 -9.12476 -8.71629 -8.45296 -6.79336 -5.69958 -2.95543 3.17273 3.47771 3.49786 3.52486 3.54400 4.16077 4.65470 4.66330 4.69055 4.76971 4.84567 4.90811 5.13602 5.21876 5.26446 5.41571 5.45932 5.50115 5.56957 5.65957 5.70479 5.71774 5.77108 5.82121 5.89001 5.90133 5.99202 6.00963 6.11079 6.12185 6.27160 6.29902 6.31931 6.36435 6.50370 6.59478 6.65534 6.75678 6.99691 7.22183 7.77906 8.06031 8.50175 8.77826 9.61319 10.20384 10.56386 11.53388 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.005901 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.139686 B = 4743.675974 C = 6448.276528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.202 3.798 3 C 0.145 3.855 4 N -0.725 5.725 5 C -0.229 4.229 6 H 0.067 0.933 7 C -0.016 4.016 8 N -0.938 5.938 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.713 5.713 14 C 0.520 3.480 15 O -0.536 6.536 16 C -0.133 4.133 17 C -0.090 4.090 18 C -0.133 4.133 19 C -0.143 4.143 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.174 4.174 23 C -0.182 4.182 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.021 0.979 28 H 0.045 0.955 29 H 0.382 0.618 30 H 0.253 0.747 31 H 0.397 0.603 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.799 -11.002 5.526 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.117 3.883 3 C 0.016 3.984 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.085 0.915 7 C -0.212 4.212 8 N -0.588 5.588 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 N -0.363 5.363 14 C 0.307 3.693 15 O -0.413 6.413 16 C -0.173 4.173 17 C -0.109 4.109 18 C -0.170 4.170 19 C -0.180 4.180 20 C -0.177 4.177 21 C -0.168 4.168 22 C -0.211 4.211 23 C -0.220 4.220 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.215 0.785 30 H 0.063 0.937 31 H 0.230 0.770 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.139 0.861 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.272 -10.109 5.607 16.859 hybrid contribution 1.254 0.229 -0.185 1.289 sum -11.018 -9.879 5.422 15.760 Atomic orbital electron populations 1.22267 0.94891 1.01439 1.03511 1.19983 0.92939 0.93072 0.82347 1.21058 0.86377 0.91876 0.99049 1.42222 0.99244 1.06107 1.89385 1.19206 0.89023 0.86249 1.41579 0.91466 1.24663 0.96271 0.96663 1.03557 1.69639 1.06648 1.23824 1.58646 0.86287 0.78900 0.83344 0.77821 1.21425 1.21795 1.21391 1.45954 1.49470 1.35553 1.05331 1.20434 0.79740 0.84858 0.84270 1.90609 1.38898 1.25510 1.86294 1.21689 1.02963 0.99563 0.93050 1.22290 0.95687 1.00952 0.91974 1.22963 0.97237 1.01198 0.95619 1.22840 0.96860 1.01630 0.96688 1.22980 0.96843 1.00830 0.97036 1.22583 1.00663 0.96903 0.96632 1.23054 0.99317 1.02870 0.95879 1.22934 1.03982 0.91569 1.03466 0.90160 0.91783 0.93133 0.96144 0.93740 0.78455 0.93707 0.76976 0.88829 0.89561 0.88166 0.91346 0.90685 0.91863 0.90352 0.90286 0.91510 0.86081 0.88318 0.88967 0.89020 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 6.98 37.16 0.26 -2.18 16 2 C 0.20 3.40 0.54 -131.82 -0.07 3.33 16 3 C 0.14 3.16 5.03 -4.05 -0.02 3.14 16 4 N -0.73 -18.63 5.04 -59.91 -0.30 -18.94 16 5 C -0.23 -6.62 9.99 -15.06 -0.15 -6.77 16 6 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 7 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 8 N -0.94 -28.40 13.06 55.49 0.72 -27.67 16 9 Si 0.90 23.04 29.55 -169.99 -5.02 18.01 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 N -0.71 -11.24 4.73 -47.60 -0.23 -11.47 16 14 C 0.52 8.60 7.24 -10.98 -0.08 8.52 16 15 O -0.54 -10.56 12.03 5.55 0.07 -10.49 16 16 C -0.13 -1.70 5.53 -27.88 -0.15 -1.86 16 17 C -0.09 -1.15 3.11 -89.81 -0.28 -1.43 16 18 C -0.13 -1.51 7.65 -25.78 -0.20 -1.71 16 19 C -0.14 -1.42 8.09 -25.78 -0.21 -1.62 16 20 C -0.14 -1.45 7.64 -25.91 -0.20 -1.65 16 21 C -0.15 -2.31 4.84 -90.61 -0.44 -2.75 16 22 C -0.17 -2.24 9.64 -26.69 -0.26 -2.49 16 23 C -0.18 -2.22 9.82 -26.69 -0.26 -2.48 16 24 H 0.08 1.36 6.04 -51.93 -0.31 1.04 16 25 H 0.06 0.89 6.78 -51.93 -0.35 0.54 16 26 H 0.05 0.66 6.98 -51.93 -0.36 0.30 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 1.08 6.32 -51.93 -0.33 0.75 16 29 H 0.38 10.00 6.62 -40.82 -0.27 9.73 16 30 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.40 5.56 8.48 -40.82 -0.35 5.21 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 34 H 0.10 1.54 7.73 -51.93 -0.40 1.14 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.78 7.92 -51.93 -0.41 0.36 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.12 2.26 7.08 -51.93 -0.37 1.89 16 42 H 0.10 1.19 5.88 -51.93 -0.31 0.88 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.09 1.03 7.35 -51.93 -0.38 0.65 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -32.03 351.75 -9.21 -41.24 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -7.60 Total: 14.54 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -2.15 Total: -10.53 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.20 Total: -58.07 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.03 -9.21 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698643424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.299 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds