Wall clock time and date at job start Tue Mar 31 2020 02:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47645 * 2 1 4 4 N 1.46493 * 109.47490 * 180.02562 * 3 2 1 5 5 C 1.36936 * 120.00152 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99665 * 0.02562 * 5 4 3 7 7 C 1.38814 * 120.00168 * 180.02562 * 5 4 3 8 8 N 1.31619 * 119.99652 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47502 * 59.99890 * 9 7 5 11 11 H 1.48501 * 109.47189 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47008 * 299.99738 * 9 7 5 13 13 N 1.46504 * 109.47499 * 120.00448 * 2 1 3 14 14 C 1.34777 * 119.99159 * 304.29203 * 13 2 1 15 15 O 1.21283 * 120.00714 * 354.98928 * 14 13 2 16 16 C 1.50701 * 119.99609 * 174.98998 * 14 13 2 17 17 C 1.53006 * 109.47090 * 180.02562 * 16 14 13 18 18 C 1.53776 * 113.61778 * 85.86242 * 17 16 14 19 19 C 1.54049 * 86.98619 * 140.01771 * 18 17 16 20 20 C 1.53784 * 113.60987 * 183.47167 * 17 16 14 21 21 C 1.53005 * 109.47092 * 239.99981 * 2 1 3 22 22 C 1.53001 * 117.49692 * 12.73923 * 21 2 1 23 23 C 1.53004 * 117.49920 * 304.07828 * 21 2 1 24 24 H 1.09000 * 109.46753 * 299.99652 * 1 2 3 25 25 H 1.08996 * 109.46952 * 59.99726 * 1 2 3 26 26 H 1.08996 * 109.47146 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46828 * 300.00479 * 3 2 1 28 28 H 1.09000 * 109.46497 * 59.99871 * 3 2 1 29 29 H 0.96999 * 119.99998 * 359.97438 * 4 3 2 30 30 H 0.97002 * 119.99151 * 179.97438 * 8 7 5 31 31 H 0.96993 * 120.00227 * 124.28985 * 13 2 1 32 32 H 1.09002 * 109.47479 * 59.99765 * 16 14 13 33 33 H 1.09001 * 109.47120 * 299.99605 * 16 14 13 34 34 H 1.08996 * 112.84529 * 314.65935 * 17 16 14 35 35 H 1.09002 * 113.61367 * 254.61318 * 18 17 16 36 36 H 1.09004 * 113.61355 * 25.51572 * 18 17 16 37 37 H 1.09002 * 113.62045 * 220.01986 * 19 18 17 38 38 H 1.08998 * 113.61228 * 89.11941 * 19 18 17 39 39 H 1.08998 * 113.61902 * 334.47569 * 20 17 16 40 40 H 1.08997 * 113.61280 * 105.30463 * 20 17 16 41 41 H 1.09003 * 115.55008 * 158.40878 * 21 2 1 42 42 H 1.08997 * 117.49979 * 0.02562 * 22 21 2 43 43 H 1.09003 * 117.49947 * 145.02271 * 22 21 2 44 44 H 1.08992 * 117.49863 * 214.97988 * 23 21 2 45 45 H 1.08997 * 117.49607 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1898 2.6283 -0.0002 6 1 3.6498 3.5636 0.0010 7 6 5.5779 2.6282 -0.0013 8 7 6.2359 1.4883 -0.0023 9 14 6.5119 4.2460 0.0000 10 1 6.1542 5.0232 1.2137 11 1 7.9719 3.9746 -0.0009 12 1 6.1523 5.0261 -1.2112 13 7 2.0184 -0.6907 1.1961 14 6 1.6230 -0.2828 2.4183 15 8 0.9366 0.7104 2.5336 16 6 2.0338 -1.0610 3.6418 17 6 1.4566 -0.3906 4.8902 18 6 0.0231 -0.8373 5.2223 19 6 0.4515 -0.8330 6.7020 20 6 1.8889 -1.0611 6.2049 21 6 2.0400 -0.7213 -1.2493 22 6 1.0274 -1.0157 -2.3578 23 6 1.5585 -2.1546 -1.4836 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 3.9900 0.6024 -0.0006 30 1 7.2059 1.4884 -0.0034 31 1 2.6262 -1.4414 1.1084 32 1 3.1214 -1.0826 3.7104 33 1 1.6541 -2.0801 3.5686 34 1 1.5875 0.6915 4.8883 35 1 -0.7335 -0.0900 4.9832 36 1 -0.2245 -1.8285 4.8423 37 1 0.0501 -1.6687 7.2753 38 1 0.3075 0.1281 7.1955 39 1 2.1504 -2.1133 6.0931 40 1 2.6384 -0.4950 6.7579 41 1 3.0588 -0.4771 -1.5501 42 1 -0.0020 -0.6952 -2.1973 43 1 1.3801 -0.9657 -3.3880 44 1 2.2604 -2.8531 -1.9389 45 1 0.8781 -2.5834 -0.7479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698643424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:37 Heat of formation + Delta-G solvation = -5.805620 kcal Electronic energy + Delta-G solvation = -23043.917850 eV Core-core repulsion = 19869.143463 eV Total energy + Delta-G solvation = -3174.774387 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40455 -39.80682 -38.50853 -36.36302 -34.90965 -33.19037 -31.84628 -30.32819 -27.59146 -26.41841 -25.45907 -24.41355 -23.86582 -23.11958 -21.10359 -20.26586 -20.01596 -19.23731 -18.22375 -17.01907 -16.78901 -16.50611 -16.20586 -16.08525 -15.43247 -15.27324 -15.06383 -14.79649 -14.30406 -13.95276 -13.67752 -13.57382 -13.25290 -13.16836 -13.06941 -12.78795 -12.72657 -12.49399 -12.24516 -12.21888 -12.03092 -12.00845 -11.74349 -11.47817 -11.23423 -11.16860 -11.06286 -11.02901 -10.89595 -10.34410 -9.84279 -8.95131 -7.96311 -5.22305 1.43071 1.46017 1.52146 1.87272 2.28758 2.54506 3.06373 3.36178 3.63257 3.71081 3.79563 3.85623 3.91975 3.97116 4.02382 4.16937 4.20940 4.25556 4.47710 4.52655 4.55524 4.73601 4.78017 4.79973 4.87762 4.90433 4.91425 4.95003 5.00830 5.03178 5.05333 5.12406 5.14088 5.21232 5.31270 5.33362 5.43892 5.44535 5.48123 5.66914 5.79195 6.26555 6.80306 7.33673 7.50299 8.08930 8.37897 9.26578 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.005901 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.139686 B = 4743.675974 C = 6448.276528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.211 3.789 3 C 0.146 3.854 4 N -0.728 5.728 5 C -0.247 4.247 6 H 0.061 0.939 7 C -0.068 4.068 8 N -0.963 5.963 9 Si 0.969 3.031 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.708 5.708 14 C 0.510 3.490 15 O -0.574 6.574 16 C -0.124 4.124 17 C -0.103 4.103 18 C -0.130 4.130 19 C -0.136 4.136 20 C -0.130 4.130 21 C -0.176 4.176 22 C -0.166 4.166 23 C -0.152 4.152 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.013 0.987 28 H 0.016 0.984 29 H 0.378 0.622 30 H 0.252 0.748 31 H 0.406 0.594 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.451 -13.041 5.652 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.125 3.875 3 C 0.018 3.982 4 N -0.371 5.371 5 C -0.379 4.379 6 H 0.079 0.921 7 C -0.260 4.260 8 N -0.614 5.614 9 Si 0.798 3.202 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.359 5.359 14 C 0.298 3.702 15 O -0.454 6.454 16 C -0.164 4.164 17 C -0.122 4.122 18 C -0.168 4.168 19 C -0.173 4.173 20 C -0.167 4.167 21 C -0.195 4.195 22 C -0.203 4.203 23 C -0.189 4.189 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.211 0.789 30 H 0.061 0.939 31 H 0.242 0.758 32 H 0.112 0.888 33 H 0.140 0.860 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.129 0.871 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.939 -12.162 5.727 18.658 hybrid contribution 1.437 0.911 -0.252 1.720 sum -11.501 -11.251 5.475 16.995 Atomic orbital electron populations 1.22167 0.93058 1.02922 1.02877 1.19774 0.94060 0.90074 0.83610 1.21090 0.84309 0.95677 0.97079 1.42272 1.00723 1.05023 1.89091 1.19513 0.89758 0.87169 1.41456 0.92097 1.25414 0.96966 0.99959 1.03679 1.69776 1.06618 1.25574 1.59435 0.85290 0.77436 0.79581 0.77928 1.21148 1.21470 1.20494 1.45977 1.49386 1.35494 1.05023 1.21185 0.79032 0.84634 0.85344 1.90599 1.40660 1.27237 1.86870 1.21726 1.02979 1.00683 0.91012 1.22276 0.97483 0.99070 0.93412 1.22976 0.95604 1.01389 0.96816 1.22814 0.96348 1.02272 0.95892 1.22975 0.97096 1.01632 0.95013 1.22259 0.99642 1.00335 0.97288 1.23184 0.99053 1.02559 0.95507 1.23020 1.03291 0.89866 1.02715 0.92376 0.90858 0.90436 0.96894 0.96630 0.78924 0.93942 0.75848 0.88793 0.86012 0.91975 0.93311 0.88895 0.89733 0.90863 0.88159 0.91811 0.89748 0.87064 0.88414 0.87784 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 6.98 71.98 0.50 -3.89 16 2 C 0.21 7.10 0.54 3.60 0.00 7.10 16 3 C 0.15 6.65 5.03 86.38 0.43 7.08 16 4 N -0.73 -38.76 5.04 -343.46 -1.73 -40.49 16 5 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 6 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 7 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 8 N -0.96 -59.13 13.06 21.65 0.28 -58.84 16 9 Si 0.97 47.88 29.55 68.60 2.03 49.91 16 10 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 11 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 N -0.71 -22.14 4.73 -422.91 -2.00 -24.14 16 14 C 0.51 16.99 7.24 87.66 0.63 17.62 16 15 O -0.57 -23.58 12.03 -3.04 -0.04 -23.61 16 16 C -0.12 -3.07 5.53 29.85 0.16 -2.91 16 17 C -0.10 -2.62 3.11 -10.27 -0.03 -2.66 16 18 C -0.13 -2.83 7.65 31.21 0.24 -2.59 16 19 C -0.14 -2.46 8.09 31.21 0.25 -2.21 16 20 C -0.13 -2.48 7.64 31.12 0.24 -2.24 16 21 C -0.18 -5.34 4.84 -10.79 -0.05 -5.39 16 22 C -0.17 -3.88 9.64 30.62 0.30 -3.59 16 23 C -0.15 -3.24 9.82 30.62 0.30 -2.94 16 24 H 0.06 1.97 6.04 -2.39 -0.01 1.96 16 25 H 0.07 1.95 6.78 -2.39 -0.02 1.94 16 26 H 0.08 1.82 6.98 -2.39 -0.02 1.80 16 27 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.02 0.81 6.32 -2.39 -0.02 0.79 16 29 H 0.38 20.48 6.62 -92.71 -0.61 19.87 16 30 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.41 11.00 8.48 -92.71 -0.79 10.21 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 33 H 0.12 2.13 7.87 -2.39 -0.02 2.11 16 34 H 0.06 2.04 7.73 -2.39 -0.02 2.02 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.68 7.92 -2.38 -0.02 1.66 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.10 1.52 8.10 -2.39 -0.02 1.50 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.08 3.22 7.08 -2.39 -0.02 3.20 16 42 H 0.11 2.34 5.88 -2.39 -0.01 2.32 16 43 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.11 1.98 7.35 -2.39 -0.02 1.96 16 Total: -1.00 -71.53 351.75 2.42 -69.12 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -0.41 Total: 42.04 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 4.29 Total: -13.98 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -3.45 Total: -123.48 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.04 Total: -23.61 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -71.53 2.42 -69.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698643424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.313 kcal (2) G-P(sol) polarization free energy of solvation -71.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds