Wall clock time and date at job start Tue Mar 31 2020 02:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47356 * 2 1 4 4 N 1.46503 * 109.47076 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00506 * 265.78886 * 4 3 2 6 6 H 1.07999 * 120.00116 * 146.21516 * 5 4 3 7 7 C 1.38814 * 119.99503 * 326.21550 * 5 4 3 8 8 N 1.31612 * 120.00603 * 337.68585 * 7 5 4 9 9 Si 1.86807 * 119.99696 * 157.69219 * 7 5 4 10 10 H 1.48494 * 109.47433 * 59.99562 * 9 7 5 11 11 H 1.48499 * 109.47196 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46785 * 299.99434 * 9 7 5 13 13 C 1.46506 * 119.99639 * 85.78699 * 4 3 2 14 14 C 1.52999 * 109.46876 * 89.99929 * 13 4 3 15 15 N 1.46502 * 109.47164 * 179.97438 * 14 13 4 16 16 C 1.34777 * 120.00151 * 179.97438 * 15 14 13 17 17 O 1.21280 * 119.99991 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00124 * 180.02562 * 16 15 14 19 19 H 1.09006 * 115.56263 * 325.74309 * 18 16 15 20 20 C 1.53122 * 117.51430 * 111.53865 * 18 16 15 21 21 C 1.52464 * 117.51652 * 180.02562 * 18 16 15 22 22 C 1.53258 * 128.58458 * 134.95021 * 21 18 16 23 23 C 1.53893 * 86.88160 * 194.89019 * 22 21 18 24 24 C 1.53252 * 128.58378 * 10.15254 * 21 18 16 25 25 H 1.08994 * 109.47535 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47343 * 300.00135 * 1 2 3 27 27 H 1.09001 * 109.47222 * 59.99326 * 1 2 3 28 28 H 1.09000 * 109.47059 * 239.99602 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00574 * 2 1 3 30 30 H 1.09000 * 109.47166 * 60.00304 * 3 2 1 31 31 H 1.08992 * 109.47469 * 300.00277 * 3 2 1 32 32 H 0.96997 * 120.00611 * 180.02562 * 8 7 5 33 33 H 1.08991 * 109.47141 * 209.99758 * 13 4 3 34 34 H 1.09004 * 109.47087 * 330.00405 * 13 4 3 35 35 H 1.09000 * 109.47607 * 300.00140 * 14 13 4 36 36 H 1.09001 * 109.47299 * 60.00083 * 14 13 4 37 37 H 0.97003 * 120.00131 * 0.02562 * 15 14 13 38 38 H 1.08998 * 117.51544 * 214.89852 * 20 18 16 39 39 H 1.08995 * 117.51139 * 0.02562 * 20 18 16 40 40 H 1.08997 * 113.64540 * 309.38914 * 22 21 18 41 41 H 1.08999 * 113.64445 * 80.39483 * 22 21 18 42 42 H 1.09000 * 113.58732 * 270.39453 * 23 22 21 43 43 H 1.08997 * 113.58434 * 139.57164 * 23 22 21 44 44 H 1.09004 * 113.64925 * 279.61373 * 24 21 18 45 45 H 1.09007 * 113.64411 * 50.61359 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.5296 1.1835 6 1 5.1325 1.0167 1.3009 7 6 3.6707 2.2773 2.2318 8 7 2.7974 3.2319 1.9903 9 14 4.2123 1.9286 3.9852 10 1 5.6802 2.1229 4.0978 11 1 3.5170 2.8575 4.9121 12 1 3.8696 0.5278 4.3398 13 6 4.2380 1.3489 -1.2645 14 6 4.4932 2.7550 -1.8110 15 7 5.2267 2.6617 -3.0757 16 6 5.5636 3.7827 -3.7437 17 8 5.2599 4.8688 -3.2976 18 6 6.3176 3.6867 -5.0449 19 1 7.0324 2.8667 -5.1149 20 6 5.5776 4.0919 -6.3228 21 6 6.6702 4.9903 -5.7526 22 6 8.0008 5.4009 -6.3926 23 6 7.4563 6.8402 -6.4009 24 6 6.5508 6.4252 -5.2279 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5140 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 2.4353 3.7547 2.7228 33 1 5.1903 0.8461 -1.0963 34 1 3.6491 0.7806 -1.9845 35 1 3.5410 3.2579 -1.9791 36 1 5.0821 3.3233 -1.0910 37 1 5.4693 1.7930 -3.4328 38 1 5.8055 3.5383 -7.2337 39 1 4.5458 4.4282 -6.2220 40 1 8.8616 5.2628 -5.7383 41 1 8.1534 4.9854 -7.3887 42 1 6.9068 7.0934 -7.3076 43 1 8.2010 7.5898 -6.1332 44 1 5.5410 6.8310 -5.2902 45 1 7.0081 6.5723 -4.2494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713549897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:39 Heat of formation + Delta-G solvation = 18.013223 kcal Electronic energy + Delta-G solvation = -21956.408188 eV Core-core repulsion = 18782.666664 eV Total energy + Delta-G solvation = -3173.741525 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.18650 -38.25583 -36.38594 -34.25847 -33.66355 -32.41052 -31.22026 -28.02498 -25.72307 -25.57051 -24.47023 -23.15014 -22.59468 -21.28487 -20.05311 -19.64295 -18.36487 -16.97988 -16.60507 -15.78362 -15.28854 -15.09801 -14.74702 -14.66838 -14.16905 -13.95200 -13.68551 -13.11125 -12.81431 -12.65482 -12.47252 -12.33699 -12.01587 -11.70775 -11.61509 -11.51082 -11.31710 -11.00847 -10.86197 -10.76536 -10.46105 -10.39380 -10.34727 -10.13109 -9.95774 -9.89136 -9.79777 -9.51289 -9.34611 -8.52531 -8.46063 -6.66238 -5.80190 -3.34866 2.80639 3.37196 3.43199 3.43748 3.50066 3.77269 4.36883 4.49300 4.55676 4.72638 4.74035 4.84480 5.21792 5.28245 5.30317 5.49062 5.51404 5.55757 5.63062 5.74553 5.78510 5.84184 5.87201 5.92175 5.97726 6.09810 6.12975 6.21740 6.25944 6.34720 6.36999 6.52855 6.59983 6.79057 6.84335 6.87733 6.90283 7.10272 7.27699 7.76000 7.81237 7.95551 8.48262 8.66272 9.16468 9.79175 10.34685 11.20579 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.003532 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.869406 B = 7925.945463 C = 8739.940412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.143 3.857 4 N -0.579 5.579 5 C -0.264 4.264 6 H 0.063 0.937 7 C 0.012 3.988 8 N -0.884 5.884 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.140 3.860 14 C 0.099 3.901 15 N -0.723 5.723 16 C 0.534 3.466 17 O -0.537 6.537 18 C -0.177 4.177 19 H 0.120 0.880 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.099 4.099 23 C -0.143 4.143 24 C -0.082 4.082 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.019 0.981 32 H 0.256 0.744 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.394 0.606 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 -0.642 -16.267 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.017 3.983 4 N -0.298 5.298 5 C -0.394 4.394 6 H 0.081 0.919 7 C -0.189 4.189 8 N -0.526 5.526 9 Si 0.728 3.272 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.012 3.988 14 C -0.026 4.026 15 N -0.374 5.374 16 C 0.319 3.681 17 O -0.414 6.414 18 C -0.199 4.199 19 H 0.137 0.863 20 C -0.161 4.161 21 C -0.129 4.129 22 C -0.136 4.136 23 C -0.180 4.180 24 C -0.119 4.119 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.038 0.962 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.227 0.773 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.101 0.270 -15.767 16.574 hybrid contribution 0.335 -0.686 0.807 1.110 sum 5.436 -0.416 -14.961 15.923 Atomic orbital electron populations 1.21694 0.97497 0.99927 1.01166 1.22082 0.93728 1.01608 1.00536 1.21054 0.83008 0.92247 1.01979 1.43849 1.01160 1.84401 1.00429 1.19047 1.06091 1.24794 0.89476 0.91935 1.25113 0.99637 0.94878 0.99227 1.69976 1.32784 1.18838 1.31045 0.86439 0.78341 0.77760 0.84672 1.20723 1.21581 1.20885 1.21075 0.96240 0.92360 0.89147 1.22416 0.95636 1.01947 0.82599 1.46174 1.58216 1.08137 1.24858 1.19605 0.79317 0.84542 0.84618 1.90698 1.54664 1.27538 1.68548 1.22211 1.03990 1.01164 0.92496 0.86254 1.22774 0.97182 1.01124 0.95027 1.22262 0.97498 0.91627 1.01471 1.22499 0.94890 0.96149 1.00039 1.22819 0.99616 0.96178 0.99387 1.22316 1.00204 0.91647 0.97771 0.94150 0.93036 0.93631 0.94228 0.92484 0.88142 0.96211 0.93381 0.93472 0.94283 0.92432 0.91258 0.77349 0.87870 0.88135 0.89669 0.91432 0.90289 0.91361 0.91298 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 37.16 0.37 -2.05 16 2 C -0.14 -2.76 6.26 -26.73 -0.17 -2.93 16 3 C 0.14 3.33 5.25 -4.04 -0.02 3.31 16 4 N -0.58 -14.07 2.45 -173.24 -0.43 -14.49 16 5 C -0.26 -7.11 9.49 -15.06 -0.14 -7.25 16 6 H 0.06 1.67 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.33 4.93 -17.43 -0.09 0.24 16 8 N -0.88 -25.39 11.32 55.49 0.63 -24.77 16 9 Si 0.90 21.50 29.61 -169.99 -5.03 16.47 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.14 2.80 5.80 -4.04 -0.02 2.78 16 14 C 0.10 2.03 6.00 -4.04 -0.02 2.00 16 15 N -0.72 -11.60 5.56 -60.30 -0.33 -11.93 16 16 C 0.53 8.93 7.61 -10.99 -0.08 8.85 16 17 O -0.54 -11.28 15.14 5.56 0.08 -11.20 16 18 C -0.18 -2.17 6.19 -91.99 -0.57 -2.74 16 19 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 20 C -0.12 -1.30 10.24 -26.92 -0.28 -1.58 16 21 C -0.13 -1.49 2.88 -154.77 -0.45 -1.93 16 22 C -0.10 -0.91 8.10 -26.13 -0.21 -1.13 16 23 C -0.14 -1.35 8.08 -25.81 -0.21 -1.56 16 24 C -0.08 -1.04 6.47 -26.14 -0.17 -1.21 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.10 2.67 5.31 -51.93 -0.28 2.39 16 31 H 0.02 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 34 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.39 4.92 8.47 -40.82 -0.35 4.58 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -30.85 367.03 -9.80 -40.65 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.19 Total: 4.93 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.06 Total: -5.19 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.13 Total: -51.19 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.85 -9.80 -40.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713549897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.658 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds