Wall clock time and date at job start Tue Mar 31 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47356 * 2 1 4 4 N 1.46503 * 109.47076 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00506 * 265.78886 * 4 3 2 6 6 H 1.07999 * 120.00116 * 146.21516 * 5 4 3 7 7 C 1.38814 * 119.99503 * 326.21550 * 5 4 3 8 8 N 1.31612 * 120.00603 * 337.68585 * 7 5 4 9 9 Si 1.86807 * 119.99696 * 157.69219 * 7 5 4 10 10 H 1.48494 * 109.47433 * 59.99562 * 9 7 5 11 11 H 1.48499 * 109.47196 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46785 * 299.99434 * 9 7 5 13 13 C 1.46506 * 119.99639 * 85.78699 * 4 3 2 14 14 C 1.52999 * 109.46876 * 89.99929 * 13 4 3 15 15 N 1.46502 * 109.47164 * 179.97438 * 14 13 4 16 16 C 1.34777 * 120.00151 * 179.97438 * 15 14 13 17 17 O 1.21280 * 119.99991 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00124 * 180.02562 * 16 15 14 19 19 H 1.09006 * 115.56263 * 325.74309 * 18 16 15 20 20 C 1.53122 * 117.51430 * 111.53865 * 18 16 15 21 21 C 1.52464 * 117.51652 * 180.02562 * 18 16 15 22 22 C 1.53258 * 128.58458 * 134.95021 * 21 18 16 23 23 C 1.53893 * 86.88160 * 194.89019 * 22 21 18 24 24 C 1.53252 * 128.58378 * 10.15254 * 21 18 16 25 25 H 1.08994 * 109.47535 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47343 * 300.00135 * 1 2 3 27 27 H 1.09001 * 109.47222 * 59.99326 * 1 2 3 28 28 H 1.09000 * 109.47059 * 239.99602 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00574 * 2 1 3 30 30 H 1.09000 * 109.47166 * 60.00304 * 3 2 1 31 31 H 1.08992 * 109.47469 * 300.00277 * 3 2 1 32 32 H 0.96997 * 120.00611 * 180.02562 * 8 7 5 33 33 H 1.08991 * 109.47141 * 209.99758 * 13 4 3 34 34 H 1.09004 * 109.47087 * 330.00405 * 13 4 3 35 35 H 1.09000 * 109.47607 * 300.00140 * 14 13 4 36 36 H 1.09001 * 109.47299 * 60.00083 * 14 13 4 37 37 H 0.97003 * 120.00131 * 0.02562 * 15 14 13 38 38 H 1.08998 * 117.51544 * 214.89852 * 20 18 16 39 39 H 1.08995 * 117.51139 * 0.02562 * 20 18 16 40 40 H 1.08997 * 113.64540 * 309.38914 * 22 21 18 41 41 H 1.08999 * 113.64445 * 80.39483 * 22 21 18 42 42 H 1.09000 * 113.58732 * 270.39453 * 23 22 21 43 43 H 1.08997 * 113.58434 * 139.57164 * 23 22 21 44 44 H 1.09004 * 113.64925 * 279.61373 * 24 21 18 45 45 H 1.09007 * 113.64411 * 50.61359 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.5296 1.1835 6 1 5.1325 1.0167 1.3009 7 6 3.6707 2.2773 2.2318 8 7 2.7974 3.2319 1.9903 9 14 4.2123 1.9286 3.9852 10 1 5.6802 2.1229 4.0978 11 1 3.5170 2.8575 4.9121 12 1 3.8696 0.5278 4.3398 13 6 4.2380 1.3489 -1.2645 14 6 4.4932 2.7550 -1.8110 15 7 5.2267 2.6617 -3.0757 16 6 5.5636 3.7827 -3.7437 17 8 5.2599 4.8688 -3.2976 18 6 6.3176 3.6867 -5.0449 19 1 7.0324 2.8667 -5.1149 20 6 5.5776 4.0919 -6.3228 21 6 6.6702 4.9903 -5.7526 22 6 8.0008 5.4009 -6.3926 23 6 7.4563 6.8402 -6.4009 24 6 6.5508 6.4252 -5.2279 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5140 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 2.4353 3.7547 2.7228 33 1 5.1903 0.8461 -1.0963 34 1 3.6491 0.7806 -1.9845 35 1 3.5410 3.2579 -1.9791 36 1 5.0821 3.3233 -1.0910 37 1 5.4693 1.7930 -3.4328 38 1 5.8055 3.5383 -7.2337 39 1 4.5458 4.4282 -6.2220 40 1 8.8616 5.2628 -5.7383 41 1 8.1534 4.9854 -7.3887 42 1 6.9068 7.0934 -7.3076 43 1 8.2010 7.5898 -6.1332 44 1 5.5410 6.8310 -5.2902 45 1 7.0081 6.5723 -4.2494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713549897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:38 Heat of formation + Delta-G solvation = 0.080857 kcal Electronic energy + Delta-G solvation = -21957.185794 eV Core-core repulsion = 18782.666664 eV Total energy + Delta-G solvation = -3174.519130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.30749 -39.46119 -38.17192 -35.84544 -34.61144 -34.16890 -33.04070 -29.71290 -27.41273 -26.58447 -25.92504 -24.16013 -23.89273 -22.91085 -21.64737 -21.10365 -19.31112 -18.71320 -18.07252 -17.04796 -16.82265 -16.42729 -16.08835 -15.99471 -15.84309 -15.34600 -15.27401 -14.79203 -14.40632 -14.10981 -13.70757 -13.42837 -13.26278 -13.19711 -12.97848 -12.81218 -12.56544 -12.49926 -12.42841 -12.31584 -12.22543 -12.07474 -11.77021 -11.67736 -11.29809 -11.27195 -11.02065 -10.81300 -10.60023 -10.52859 -10.04515 -8.66510 -7.85949 -5.44450 1.45390 1.47480 1.54147 1.54286 2.16762 2.51317 2.79701 3.22492 3.42560 3.69380 3.72774 3.83760 3.89967 3.97696 4.14870 4.23012 4.33919 4.34911 4.51517 4.53735 4.64636 4.67603 4.71995 4.80417 4.85723 4.87408 4.89721 5.04216 5.07363 5.09762 5.12280 5.16284 5.18399 5.27645 5.37762 5.40615 5.49218 5.52468 5.58674 5.66346 5.89806 6.43180 6.65392 7.13257 7.34646 7.83021 8.32593 9.11485 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.003532 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.869406 B = 7925.945463 C = 8739.940412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.143 3.857 4 N -0.596 5.596 5 C -0.271 4.271 6 H 0.064 0.936 7 C -0.039 4.039 8 N -0.918 5.918 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.275 1.275 13 C 0.144 3.856 14 C 0.123 3.877 15 N -0.709 5.709 16 C 0.526 3.474 17 O -0.590 6.590 18 C -0.183 4.183 19 H 0.153 0.847 20 C -0.104 4.104 21 C -0.141 4.141 22 C -0.084 4.084 23 C -0.131 4.131 24 C -0.101 4.101 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.017 0.983 32 H 0.251 0.749 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.023 0.977 37 H 0.416 0.584 38 H 0.143 0.857 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.046 0.954 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.580 -2.812 -18.774 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.017 3.983 4 N -0.316 5.316 5 C -0.401 4.401 6 H 0.081 0.919 7 C -0.236 4.236 8 N -0.562 5.562 9 Si 0.786 3.214 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.201 1.201 13 C 0.017 3.983 14 C -0.005 4.005 15 N -0.361 5.361 16 C 0.314 3.686 17 O -0.470 6.470 18 C -0.203 4.203 19 H 0.171 0.829 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.121 4.121 23 C -0.168 4.168 24 C -0.138 4.138 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.253 0.747 38 H 0.160 0.840 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.276 -1.954 -18.313 19.457 hybrid contribution -0.037 0.036 1.540 1.541 sum 6.239 -1.918 -16.773 17.998 Atomic orbital electron populations 1.21644 0.95092 1.01738 1.01226 1.21896 0.95793 0.98588 1.00440 1.20983 0.82802 0.94347 1.00152 1.44089 1.01749 1.84518 1.01254 1.19333 1.06035 1.23975 0.90761 0.91883 1.25816 1.00219 0.94916 1.02650 1.70131 1.34457 1.20075 1.31561 0.85489 0.77935 0.77569 0.80376 1.20204 1.22115 1.20067 1.21158 0.96949 0.92049 0.88130 1.21821 0.93698 1.01294 0.83639 1.45913 1.57483 1.09484 1.23251 1.20527 0.78642 0.83562 0.85880 1.90683 1.56678 1.29523 1.70144 1.22213 1.04808 1.02984 0.90329 0.82917 1.22900 0.96011 1.00026 0.95175 1.22515 0.99533 0.90371 1.01697 1.22470 0.93314 0.95214 1.01137 1.22801 0.98884 0.97057 0.98051 1.22326 0.99606 0.93871 0.98033 0.91393 0.94111 0.92531 0.92489 0.94224 0.91556 0.96488 0.94004 0.92150 0.91255 0.95534 0.95877 0.74743 0.83952 0.89725 0.89481 0.88725 0.88892 0.90541 0.93530 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.91 71.98 0.71 -3.70 16 2 C -0.13 -4.90 6.26 30.59 0.19 -4.71 16 3 C 0.14 6.76 5.25 86.38 0.45 7.21 16 4 N -0.60 -29.30 2.45 -702.01 -1.72 -31.02 16 5 C -0.27 -14.77 9.49 84.03 0.80 -13.97 16 6 H 0.06 3.37 7.92 -2.91 -0.02 3.35 16 7 C -0.04 -2.17 4.93 84.86 0.42 -1.75 16 8 N -0.92 -54.89 11.32 21.65 0.25 -54.65 16 9 Si 0.96 45.05 29.61 68.60 2.03 47.08 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 C 0.14 5.71 5.80 86.38 0.50 6.21 16 14 C 0.12 5.16 6.00 86.38 0.52 5.68 16 15 N -0.71 -22.47 5.56 -463.06 -2.57 -25.04 16 16 C 0.53 17.73 7.61 87.66 0.67 18.40 16 17 O -0.59 -26.18 15.14 -3.03 -0.05 -26.22 16 18 C -0.18 -4.09 6.19 -11.68 -0.07 -4.16 16 19 H 0.15 2.41 8.14 -2.38 -0.02 2.39 16 20 C -0.10 -1.90 10.24 30.47 0.31 -1.59 16 21 C -0.14 -3.02 2.88 -52.35 -0.15 -3.17 16 22 C -0.08 -1.30 8.10 30.98 0.25 -1.05 16 23 C -0.13 -2.24 8.08 31.19 0.25 -1.99 16 24 C -0.10 -2.62 6.47 30.98 0.20 -2.42 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.07 3.66 5.31 -2.39 -0.01 3.64 16 31 H 0.02 0.78 8.10 -2.39 -0.02 0.76 16 32 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 34 H 0.07 2.34 8.07 -2.38 -0.02 2.32 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.42 9.47 8.47 -92.71 -0.79 8.69 16 38 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 44 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.06 1.86 8.05 -2.38 -0.02 1.84 16 Total: -1.00 -71.74 367.03 3.15 -68.59 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.16 Total: 22.28 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 5.05 Total: -1.02 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -4.05 Total: -110.71 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.05 Total: -26.22 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.74 3.15 -68.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713549897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.671 kcal (2) G-P(sol) polarization free energy of solvation -71.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds