Wall clock time and date at job start Tue Mar 31 2020 02:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47108 * 2 1 4 4 N 1.46500 * 109.47121 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00247 * 265.79042 * 4 3 2 6 6 H 1.07993 * 120.00235 * 146.21069 * 5 4 3 7 7 C 1.38814 * 119.99745 * 326.22088 * 5 4 3 8 8 N 1.31612 * 119.99950 * 337.67642 * 7 5 4 9 9 Si 1.86797 * 120.00066 * 157.67853 * 7 5 4 10 10 H 1.48507 * 109.47054 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47094 * 119.99696 * 9 7 5 12 12 H 1.48504 * 109.47217 * 239.99891 * 9 7 5 13 13 C 1.46500 * 120.00037 * 85.79227 * 4 3 2 14 14 C 1.52997 * 109.47406 * 90.00191 * 13 4 3 15 15 N 1.46500 * 109.47406 * 180.02562 * 14 13 4 16 16 C 1.34774 * 120.00302 * 179.97438 * 15 14 13 17 17 O 1.21279 * 119.99666 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00289 * 180.02562 * 16 15 14 19 19 H 1.09000 * 115.55541 * 34.26463 * 18 16 15 20 20 C 1.53120 * 117.51172 * 248.46546 * 18 16 15 21 21 C 1.52453 * 117.51371 * 180.02562 * 18 16 15 22 22 C 1.53259 * 128.58721 * 225.04584 * 21 18 16 23 23 C 1.53894 * 86.88190 * 114.94362 * 22 21 18 24 24 C 1.53423 * 128.52270 * 349.80269 * 21 18 16 25 25 H 1.08999 * 109.47366 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47248 * 300.00252 * 1 2 3 27 27 H 1.09007 * 109.47173 * 60.00337 * 1 2 3 28 28 H 1.09000 * 109.47248 * 239.99748 * 2 1 3 29 29 H 1.09007 * 109.47173 * 119.99663 * 2 1 3 30 30 H 1.09000 * 109.47271 * 59.99763 * 3 2 1 31 31 H 1.09000 * 109.47083 * 299.99585 * 3 2 1 32 32 H 0.97002 * 120.00058 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46943 * 329.99543 * 13 4 3 34 34 H 1.09007 * 109.47200 * 210.00356 * 13 4 3 35 35 H 1.08997 * 109.47142 * 59.99806 * 14 13 4 36 36 H 1.09004 * 109.46589 * 300.00132 * 14 13 4 37 37 H 0.96996 * 119.99634 * 0.02562 * 15 14 13 38 38 H 1.09003 * 117.51408 * 145.09921 * 20 18 16 39 39 H 1.08997 * 117.51831 * 359.97438 * 20 18 16 40 40 H 1.09002 * 113.64364 * 0.45482 * 22 21 18 41 41 H 1.08990 * 113.73322 * 229.45593 * 22 21 18 42 42 H 1.09004 * 113.58480 * 139.57317 * 23 22 21 43 43 H 1.08993 * 113.59245 * 270.31851 * 23 22 21 44 44 H 1.09005 * 113.64711 * 130.54292 * 24 21 18 45 45 H 1.09004 * 113.69236 * 359.49544 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5297 1.1836 6 1 5.1323 1.0169 1.3010 7 6 3.6704 2.2773 2.2319 8 7 2.7972 3.2320 1.9904 9 14 4.2117 1.9284 3.9854 10 1 5.1932 0.8138 3.9879 11 1 4.8413 3.1443 4.5603 12 1 3.0307 1.5492 4.8019 13 6 4.2380 1.3492 -1.2644 14 6 4.4933 2.7553 -1.8108 15 7 5.2258 2.6620 -3.0761 16 6 5.5625 3.7831 -3.7441 17 8 5.2595 4.8691 -3.2975 18 6 6.3155 3.6871 -5.0460 19 1 6.0709 2.8263 -5.6683 20 6 7.7632 4.1856 -5.0641 21 6 6.6680 4.9907 -5.7535 22 6 6.5295 5.3395 -7.2394 23 6 5.4859 6.3859 -6.8102 24 6 6.1815 6.4111 -5.4378 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 2.4350 3.7546 2.7229 33 1 3.6492 0.7809 -1.9844 34 1 5.1904 0.8463 -1.0962 35 1 5.0821 3.3236 -1.0908 36 1 3.5409 3.2582 -1.9789 37 1 5.4678 1.7933 -3.4334 38 1 8.4714 3.6525 -5.6985 39 1 8.1706 4.5833 -4.1347 40 1 6.1154 4.5307 -7.8416 41 1 7.4301 5.7730 -7.6740 42 1 5.5622 7.3269 -7.3552 43 1 4.4679 5.9982 -6.7762 44 1 6.9858 7.1435 -5.3686 45 1 5.4889 6.4602 -4.5975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713549898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:42 Heat of formation + Delta-G solvation = 18.811772 kcal Electronic energy + Delta-G solvation = -22018.182836 eV Core-core repulsion = 18844.475939 eV Total energy + Delta-G solvation = -3173.706897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.23032 -38.20483 -36.39017 -34.28080 -33.66974 -32.41664 -31.23118 -28.05069 -25.69326 -25.57725 -24.60276 -22.84627 -22.61943 -21.30812 -20.17458 -19.73590 -18.36896 -16.99642 -16.58420 -15.58796 -15.28597 -15.13812 -14.86033 -14.59865 -14.14511 -14.07765 -13.63783 -13.15155 -12.87610 -12.67784 -12.51546 -12.24746 -12.04686 -11.71868 -11.59173 -11.42244 -11.30575 -11.00865 -10.86515 -10.80071 -10.44472 -10.39015 -10.32446 -10.09644 -9.94985 -9.89366 -9.87015 -9.50949 -9.21880 -8.54388 -8.48009 -6.67053 -5.80929 -3.35570 2.77331 3.34810 3.42042 3.44828 3.47716 3.81741 4.38898 4.48638 4.54737 4.70734 4.79907 4.87330 5.17782 5.29571 5.33151 5.50355 5.50655 5.59076 5.65662 5.68483 5.81157 5.83767 5.89464 5.92923 5.96717 6.08714 6.21112 6.23556 6.30630 6.33860 6.44708 6.52422 6.59595 6.78922 6.83545 6.87797 6.89771 7.09266 7.26989 7.75645 7.81122 7.92822 8.47524 8.64180 9.15772 9.78458 10.33849 11.19771 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.003571 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.667593 B = 7838.799450 C = 8483.029500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.143 3.857 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.064 0.936 7 C 0.011 3.989 8 N -0.884 5.884 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.287 1.287 13 C 0.139 3.861 14 C 0.099 3.901 15 N -0.722 5.722 16 C 0.535 3.465 17 O -0.537 6.537 18 C -0.161 4.161 19 H 0.120 0.880 20 C -0.141 4.141 21 C -0.126 4.126 22 C -0.099 4.099 23 C -0.138 4.138 24 C -0.108 4.108 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.019 0.981 32 H 0.255 0.745 33 H 0.039 0.961 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.394 0.606 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.127 -0.825 -16.093 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.017 3.983 4 N -0.299 5.299 5 C -0.392 4.392 6 H 0.081 0.919 7 C -0.189 4.189 8 N -0.526 5.526 9 Si 0.727 3.273 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.214 1.214 13 C 0.012 3.988 14 C -0.026 4.026 15 N -0.373 5.373 16 C 0.320 3.680 17 O -0.414 6.414 18 C -0.182 4.182 19 H 0.138 0.862 20 C -0.178 4.178 21 C -0.126 4.126 22 C -0.137 4.137 23 C -0.175 4.175 24 C -0.145 4.145 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.227 0.773 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.800 0.068 -15.601 16.323 hybrid contribution 0.328 -0.654 0.748 1.047 sum 5.128 -0.587 -14.853 15.724 Atomic orbital electron populations 1.21695 0.97495 0.99933 1.01172 1.22081 0.93731 1.01599 1.00532 1.21057 0.82995 0.92254 1.01988 1.43869 1.01176 1.84380 1.00444 1.19124 1.06037 1.24671 0.89399 0.91851 1.25116 0.99642 0.94922 0.99245 1.69998 1.32847 1.18962 1.30814 0.86319 0.78107 0.77842 0.85066 1.20085 1.21636 1.21403 1.21079 0.96263 0.92342 0.89160 1.22429 0.95652 1.01990 0.82559 1.46184 1.58128 1.08141 1.24834 1.19630 0.79267 0.84546 0.84568 1.90640 1.54745 1.27427 1.68599 1.22115 0.99669 0.99026 0.97438 0.86198 1.22824 0.89595 1.02513 1.02875 1.22120 1.01835 0.92757 0.95918 1.22510 0.99393 0.98780 0.92968 1.22744 0.98483 0.98808 0.97514 1.22654 1.00297 0.92814 0.98731 0.94146 0.93032 0.93628 0.94223 0.92486 0.88133 0.96209 0.93493 0.94285 0.93441 0.91220 0.92379 0.77316 0.87969 0.88168 0.91583 0.89606 0.91558 0.90270 0.90250 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 37.16 0.37 -2.05 16 2 C -0.14 -2.75 6.26 -26.73 -0.17 -2.92 16 3 C 0.14 3.32 5.25 -4.04 -0.02 3.30 16 4 N -0.58 -14.02 2.45 -173.24 -0.43 -14.44 16 5 C -0.26 -7.03 9.49 -15.06 -0.14 -7.17 16 6 H 0.06 1.69 7.92 -52.49 -0.42 1.27 16 7 C 0.01 0.31 4.93 -17.43 -0.09 0.22 16 8 N -0.88 -25.33 11.32 55.49 0.63 -24.70 16 9 Si 0.90 21.44 29.61 -169.99 -5.03 16.40 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.14 2.78 5.80 -4.04 -0.02 2.76 16 14 C 0.10 2.00 6.00 -4.04 -0.02 1.98 16 15 N -0.72 -11.47 5.56 -60.30 -0.33 -11.81 16 16 C 0.53 8.87 7.61 -10.99 -0.08 8.78 16 17 O -0.54 -11.13 14.10 5.56 0.08 -11.05 16 18 C -0.16 -1.97 6.19 -91.99 -0.57 -2.54 16 19 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 20 C -0.14 -1.53 10.23 -26.97 -0.28 -1.81 16 21 C -0.13 -1.47 2.88 -154.74 -0.45 -1.92 16 22 C -0.10 -0.93 8.10 -26.13 -0.21 -1.14 16 23 C -0.14 -1.44 8.07 -25.81 -0.21 -1.65 16 24 C -0.11 -1.37 7.64 -26.05 -0.20 -1.57 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 2.67 5.31 -51.93 -0.28 2.39 16 31 H 0.02 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 34 H 0.05 0.91 8.04 -51.92 -0.42 0.49 16 35 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.39 4.87 8.47 -40.82 -0.35 4.53 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.10 1.58 5.83 -51.93 -0.30 1.28 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -30.62 364.93 -9.75 -40.37 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.07 Total: 5.45 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.09 Total: -5.73 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.13 Total: -50.95 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.62 -9.75 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713549898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.187 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds