Wall clock time and date at job start Tue Mar 31 2020 02:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47108 * 2 1 4 4 N 1.46500 * 109.47121 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00247 * 265.79042 * 4 3 2 6 6 H 1.07993 * 120.00235 * 146.21069 * 5 4 3 7 7 C 1.38814 * 119.99745 * 326.22088 * 5 4 3 8 8 N 1.31612 * 119.99950 * 337.67642 * 7 5 4 9 9 Si 1.86797 * 120.00066 * 157.67853 * 7 5 4 10 10 H 1.48507 * 109.47054 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47094 * 119.99696 * 9 7 5 12 12 H 1.48504 * 109.47217 * 239.99891 * 9 7 5 13 13 C 1.46500 * 120.00037 * 85.79227 * 4 3 2 14 14 C 1.52997 * 109.47406 * 90.00191 * 13 4 3 15 15 N 1.46500 * 109.47406 * 180.02562 * 14 13 4 16 16 C 1.34774 * 120.00302 * 179.97438 * 15 14 13 17 17 O 1.21279 * 119.99666 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00289 * 180.02562 * 16 15 14 19 19 H 1.09000 * 115.55541 * 34.26463 * 18 16 15 20 20 C 1.53120 * 117.51172 * 248.46546 * 18 16 15 21 21 C 1.52453 * 117.51371 * 180.02562 * 18 16 15 22 22 C 1.53259 * 128.58721 * 225.04584 * 21 18 16 23 23 C 1.53894 * 86.88190 * 114.94362 * 22 21 18 24 24 C 1.53423 * 128.52270 * 349.80269 * 21 18 16 25 25 H 1.08999 * 109.47366 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47248 * 300.00252 * 1 2 3 27 27 H 1.09007 * 109.47173 * 60.00337 * 1 2 3 28 28 H 1.09000 * 109.47248 * 239.99748 * 2 1 3 29 29 H 1.09007 * 109.47173 * 119.99663 * 2 1 3 30 30 H 1.09000 * 109.47271 * 59.99763 * 3 2 1 31 31 H 1.09000 * 109.47083 * 299.99585 * 3 2 1 32 32 H 0.97002 * 120.00058 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46943 * 329.99543 * 13 4 3 34 34 H 1.09007 * 109.47200 * 210.00356 * 13 4 3 35 35 H 1.08997 * 109.47142 * 59.99806 * 14 13 4 36 36 H 1.09004 * 109.46589 * 300.00132 * 14 13 4 37 37 H 0.96996 * 119.99634 * 0.02562 * 15 14 13 38 38 H 1.09003 * 117.51408 * 145.09921 * 20 18 16 39 39 H 1.08997 * 117.51831 * 359.97438 * 20 18 16 40 40 H 1.09002 * 113.64364 * 0.45482 * 22 21 18 41 41 H 1.08990 * 113.73322 * 229.45593 * 22 21 18 42 42 H 1.09004 * 113.58480 * 139.57317 * 23 22 21 43 43 H 1.08993 * 113.59245 * 270.31851 * 23 22 21 44 44 H 1.09005 * 113.64711 * 130.54292 * 24 21 18 45 45 H 1.09004 * 113.69236 * 359.49544 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.5297 1.1836 6 1 5.1323 1.0169 1.3010 7 6 3.6704 2.2773 2.2319 8 7 2.7972 3.2320 1.9904 9 14 4.2117 1.9284 3.9854 10 1 5.1932 0.8138 3.9879 11 1 4.8413 3.1443 4.5603 12 1 3.0307 1.5492 4.8019 13 6 4.2380 1.3492 -1.2644 14 6 4.4933 2.7553 -1.8108 15 7 5.2258 2.6620 -3.0761 16 6 5.5625 3.7831 -3.7441 17 8 5.2595 4.8691 -3.2975 18 6 6.3155 3.6871 -5.0460 19 1 6.0709 2.8263 -5.6683 20 6 7.7632 4.1856 -5.0641 21 6 6.6680 4.9907 -5.7535 22 6 6.5295 5.3395 -7.2394 23 6 5.4859 6.3859 -6.8102 24 6 6.1815 6.4111 -5.4378 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 2.4350 3.7546 2.7229 33 1 3.6492 0.7809 -1.9844 34 1 5.1904 0.8463 -1.0962 35 1 5.0821 3.3236 -1.0908 36 1 3.5409 3.2582 -1.9789 37 1 5.4678 1.7933 -3.4334 38 1 8.4714 3.6525 -5.6985 39 1 8.1706 4.5833 -4.1347 40 1 6.1154 4.5307 -7.8416 41 1 7.4301 5.7730 -7.6740 42 1 5.5622 7.3269 -7.3552 43 1 4.4679 5.9982 -6.7762 44 1 6.9858 7.1435 -5.3686 45 1 5.4889 6.4602 -4.5975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713549898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:41 Heat of formation + Delta-G solvation = 1.069322 kcal Electronic energy + Delta-G solvation = -22018.952206 eV Core-core repulsion = 18844.475939 eV Total energy + Delta-G solvation = -3174.476267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.35661 -39.40719 -38.16576 -35.85542 -34.62380 -34.16904 -33.04375 -29.72802 -27.41535 -26.54977 -26.01199 -24.26848 -23.56644 -22.92769 -21.66882 -21.27466 -19.38529 -18.71597 -18.04384 -16.90761 -16.76294 -16.51030 -16.10663 -16.00812 -15.68789 -15.60771 -15.15145 -14.79881 -14.44707 -14.11756 -13.76584 -13.43579 -13.24791 -13.22487 -12.91375 -12.84009 -12.60025 -12.48950 -12.43738 -12.29056 -12.17607 -12.05328 -11.76202 -11.67353 -11.33016 -11.28587 -11.00433 -10.80619 -10.55560 -10.44874 -10.05455 -8.66800 -7.86110 -5.44577 1.43635 1.46716 1.51960 1.56752 2.14235 2.50993 2.82475 3.22489 3.43661 3.63627 3.75670 3.85340 3.90554 3.99413 4.12886 4.23747 4.33425 4.34216 4.50096 4.53498 4.65045 4.67630 4.71957 4.82623 4.85400 4.87337 4.90546 5.04076 5.07303 5.08710 5.12337 5.16790 5.26636 5.30634 5.38078 5.42067 5.50642 5.54498 5.59991 5.66838 5.89865 6.43308 6.63996 7.13149 7.34268 7.82856 8.32348 9.11512 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.003571 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.667593 B = 7838.799450 C = 8483.029500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.143 3.857 4 N -0.596 5.596 5 C -0.268 4.268 6 H 0.064 0.936 7 C -0.040 4.040 8 N -0.919 5.919 9 Si 0.957 3.043 10 H -0.264 1.264 11 H -0.295 1.295 12 H -0.288 1.288 13 C 0.144 3.856 14 C 0.122 3.878 15 N -0.709 5.709 16 C 0.526 3.474 17 O -0.587 6.587 18 C -0.164 4.164 19 H 0.156 0.844 20 C -0.126 4.126 21 C -0.137 4.137 22 C -0.079 4.079 23 C -0.136 4.136 24 C -0.124 4.124 25 H 0.067 0.933 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.017 0.983 32 H 0.250 0.750 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.023 0.977 36 H 0.027 0.973 37 H 0.416 0.584 38 H 0.139 0.861 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 -2.958 -18.623 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.017 3.983 4 N -0.316 5.316 5 C -0.398 4.398 6 H 0.081 0.919 7 C -0.237 4.237 8 N -0.563 5.563 9 Si 0.785 3.215 10 H -0.188 1.188 11 H -0.223 1.223 12 H -0.214 1.214 13 C 0.017 3.983 14 C -0.005 4.005 15 N -0.361 5.361 16 C 0.314 3.686 17 O -0.468 6.468 18 C -0.185 4.185 19 H 0.174 0.826 20 C -0.163 4.163 21 C -0.138 4.138 22 C -0.116 4.116 23 C -0.174 4.174 24 C -0.161 4.161 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.253 0.747 38 H 0.157 0.843 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.001 -2.120 -18.169 19.252 hybrid contribution -0.026 0.070 1.501 1.503 sum 5.976 -2.050 -16.668 17.826 Atomic orbital electron populations 1.21645 0.95130 1.01740 1.01202 1.21897 0.95762 0.98580 1.00480 1.20981 0.82793 0.94356 1.00136 1.44109 1.01761 1.84493 1.01279 1.19392 1.05932 1.23797 0.90669 0.91852 1.25813 1.00243 0.94984 1.02636 1.70147 1.34525 1.20211 1.31392 0.85377 0.77746 0.77542 0.80802 1.18797 1.22258 1.21409 1.21161 0.96966 0.92049 0.88134 1.21827 0.93715 1.01316 0.83610 1.45921 1.57438 1.09485 1.23227 1.20546 0.78642 0.83590 0.85835 1.90643 1.56603 1.29349 1.70174 1.22137 1.00218 1.00947 0.95223 0.82641 1.22932 0.89222 1.01735 1.02456 1.22320 1.02065 0.91590 0.97785 1.22476 0.99564 0.98442 0.91134 1.22731 0.98230 1.00351 0.96057 1.22697 1.00243 0.94586 0.98602 0.91380 0.94147 0.92548 0.92472 0.94152 0.91579 0.96506 0.94033 0.91250 0.92121 0.95810 0.95495 0.74728 0.84281 0.90114 0.89888 0.87470 0.89901 0.91439 0.89478 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.91 71.98 0.71 -3.70 16 2 C -0.13 -4.88 6.26 30.59 0.19 -4.69 16 3 C 0.14 6.75 5.25 86.38 0.45 7.20 16 4 N -0.60 -29.20 2.45 -702.00 -1.72 -30.92 16 5 C -0.27 -14.54 9.49 84.03 0.80 -13.75 16 6 H 0.06 3.39 7.92 -2.91 -0.02 3.36 16 7 C -0.04 -2.22 4.93 84.86 0.42 -1.80 16 8 N -0.92 -54.83 11.32 21.65 0.25 -54.59 16 9 Si 0.96 44.98 29.61 68.60 2.03 47.01 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 13 C 0.14 5.66 5.80 86.38 0.50 6.17 16 14 C 0.12 5.12 6.00 86.38 0.52 5.64 16 15 N -0.71 -22.27 5.56 -463.07 -2.57 -24.84 16 16 C 0.53 17.60 7.61 87.66 0.67 18.27 16 17 O -0.59 -25.83 14.10 -3.03 -0.04 -25.87 16 18 C -0.16 -3.68 6.19 -11.68 -0.07 -3.75 16 19 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 20 C -0.13 -2.42 10.23 30.44 0.31 -2.11 16 21 C -0.14 -2.94 2.88 -52.33 -0.15 -3.09 16 22 C -0.08 -1.20 8.10 30.98 0.25 -0.95 16 23 C -0.14 -2.66 8.07 31.19 0.25 -2.41 16 24 C -0.12 -3.19 7.64 31.03 0.24 -2.95 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.07 3.64 5.31 -2.39 -0.01 3.63 16 31 H 0.02 0.77 8.10 -2.39 -0.02 0.75 16 32 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 34 H 0.06 2.24 8.04 -2.38 -0.02 2.22 16 35 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.42 9.37 8.47 -92.71 -0.79 8.59 16 38 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.05 1.89 5.83 -2.38 -0.01 1.88 16 Total: -1.00 -71.35 364.93 3.19 -68.16 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.17 Total: 22.97 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 5.09 Total: -1.91 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -4.05 Total: -110.35 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.04 Total: -25.87 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -71.35 3.19 -68.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713549898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.229 kcal (2) G-P(sol) polarization free energy of solvation -71.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds