Wall clock time and date at job start Tue Mar 31 2020 01:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50697 * 120.00511 * 2 1 4 4 H 1.09009 * 109.46610 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47631 * 240.00409 * 3 2 1 6 6 C 1.53004 * 109.47205 * 64.99250 * 5 3 2 7 7 C 1.52998 * 109.47571 * 119.99905 * 3 2 1 8 8 C 1.50699 * 109.47328 * 185.00564 * 7 3 2 9 9 O 1.21288 * 119.99892 * 359.97438 * 8 7 3 10 10 N 1.34771 * 120.00330 * 179.97438 * 8 7 3 11 11 C 1.46500 * 120.00602 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47422 * 179.97438 * 11 10 8 13 13 N 1.46504 * 109.47058 * 179.97438 * 12 11 10 14 14 C 1.36935 * 119.99937 * 270.00095 * 13 12 11 15 15 H 1.08003 * 119.99855 * 144.92770 * 14 13 12 16 16 C 1.38814 * 120.00273 * 324.92932 * 14 13 12 17 17 N 1.31620 * 119.99838 * 337.93463 * 16 14 13 18 18 Si 1.86801 * 120.00091 * 157.93681 * 16 14 13 19 19 H 1.48501 * 109.46754 * 89.99914 * 18 16 14 20 20 H 1.48495 * 109.46949 * 209.99670 * 18 16 14 21 21 H 1.48495 * 109.47225 * 330.00128 * 18 16 14 22 22 C 1.46494 * 119.99631 * 90.00309 * 13 12 11 23 23 C 1.53008 * 117.49603 * 183.23516 * 22 13 12 24 24 C 1.53005 * 117.50060 * 114.58020 * 22 13 12 25 25 H 1.07993 * 120.00030 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.99724 * 180.02562 * 1 2 3 27 27 H 1.08009 * 120.00322 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47516 * 184.99273 * 5 3 2 29 29 H 1.09006 * 109.46696 * 304.99879 * 5 3 2 30 30 H 1.08998 * 109.47357 * 180.02562 * 6 5 3 31 31 H 1.09008 * 109.47116 * 300.00336 * 6 5 3 32 32 H 1.08999 * 109.47116 * 60.00627 * 6 5 3 33 33 H 1.08992 * 109.47057 * 65.00381 * 7 3 2 34 34 H 1.09002 * 109.46902 * 305.00222 * 7 3 2 35 35 H 0.97000 * 119.99744 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.46594 * 59.99687 * 11 10 8 37 37 H 1.09002 * 109.46711 * 300.00837 * 11 10 8 38 38 H 1.09004 * 109.46724 * 60.00514 * 12 11 10 39 39 H 1.08991 * 109.47467 * 300.00375 * 12 11 10 40 40 H 0.96995 * 119.99672 * 176.06957 * 17 16 14 41 41 H 1.08998 * 115.55292 * 328.90743 * 22 13 12 42 42 H 1.09004 * 117.49709 * 0.02562 * 23 22 13 43 43 H 1.09001 * 117.49616 * 145.02232 * 23 22 13 44 44 H 1.08992 * 117.50031 * 214.97936 * 24 22 13 45 45 H 1.09007 * 117.49694 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3861 -1.2492 6 6 2.0564 1.4307 -2.4953 7 6 2.9432 1.3861 1.2492 8 6 3.6020 2.7399 1.3127 9 8 3.3893 3.5592 0.4440 10 7 4.4275 3.0404 2.3347 11 6 5.0685 4.3563 2.3962 12 6 5.9470 4.4379 3.6461 13 7 6.5884 5.7536 3.7072 14 6 7.8082 5.9488 3.1164 15 1 8.0384 6.8969 2.6532 16 6 8.7490 4.9280 3.1129 17 7 8.6787 3.9652 4.0076 18 14 10.1147 4.9209 1.8384 19 1 11.2876 5.6635 2.3657 20 1 10.5081 3.5199 1.5423 21 1 9.6341 5.5736 0.5942 22 6 5.9247 6.8605 4.4004 23 6 6.6093 8.2284 4.3645 24 6 6.5983 7.4114 5.6589 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 3.5539 2.2878 -1.2056 29 1 3.5905 0.5104 -1.2952 30 1 2.6830 1.4880 -3.3853 31 1 1.4455 0.5289 -2.5390 32 1 1.4090 2.3064 -2.4494 33 1 3.7085 0.6113 1.2055 34 1 2.3279 1.2395 2.1369 35 1 4.5973 2.3854 3.0297 36 1 4.3033 5.1315 2.4391 37 1 5.6841 4.5024 1.5086 38 1 6.7122 3.6627 3.6035 39 1 5.3310 4.2920 4.5334 40 1 9.3011 3.2222 3.9703 41 1 4.8351 6.8423 4.3797 42 1 7.5532 8.3048 3.8248 43 1 5.9699 9.1101 4.3206 44 1 5.9519 7.7558 6.4659 45 1 7.5352 6.9499 5.9713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713561355.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:27 Heat of formation + Delta-G solvation = 11.204951 kcal Electronic energy + Delta-G solvation = -22015.926291 eV Core-core repulsion = 18841.889538 eV Total energy + Delta-G solvation = -3174.036753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.60137 -37.23448 -36.67777 -34.66460 -33.21302 -31.84493 -31.06712 -30.21114 -27.58487 -24.89927 -23.94855 -21.97760 -21.60482 -21.24377 -20.09095 -19.75046 -19.60136 -16.87744 -16.09921 -15.65230 -15.53669 -15.15207 -14.83989 -14.73838 -14.49288 -13.98456 -13.76620 -13.26124 -13.19447 -12.73533 -12.58535 -12.38029 -11.93550 -11.87825 -11.58155 -11.23270 -11.14459 -11.05879 -10.75211 -10.73806 -10.72198 -10.59391 -10.33402 -10.13619 -9.85150 -9.66018 -9.53012 -9.39192 -9.23910 -8.56212 -8.45987 -6.65959 -5.87470 -3.47275 2.14601 2.99998 3.30937 3.39433 3.44342 3.62519 4.41041 4.70301 4.72907 4.90254 5.01753 5.13876 5.20545 5.27384 5.29708 5.33093 5.46604 5.50703 5.70964 5.74192 5.88263 5.90086 5.96345 6.03086 6.10536 6.11831 6.19736 6.28597 6.32129 6.40682 6.47971 6.51476 6.54123 6.60554 6.69357 6.90071 6.97323 7.06380 7.19431 7.51874 7.74259 7.95859 8.39164 8.63336 9.06577 9.69411 10.24258 11.09085 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.003800 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.720301 B = 7366.683998 C = 8129.487980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.123 4.123 6 C -0.147 4.147 7 C -0.135 4.135 8 C 0.506 3.494 9 O -0.545 6.545 10 N -0.722 5.722 11 C 0.099 3.901 12 C 0.136 3.864 13 N -0.548 5.548 14 C -0.259 4.259 15 H 0.068 0.932 16 C 0.012 3.988 17 N -0.884 5.884 18 Si 0.896 3.104 19 H -0.285 1.285 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.119 3.881 23 C -0.195 4.195 24 C -0.220 4.220 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.397 0.603 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.031 0.969 40 H 0.255 0.745 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.505 -7.587 -4.106 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.159 4.159 3 C -0.064 4.064 4 H 0.099 0.901 5 C -0.160 4.160 6 C -0.204 4.204 7 C -0.175 4.175 8 C 0.292 3.708 9 O -0.424 6.424 10 N -0.372 5.372 11 C -0.026 4.026 12 C 0.009 3.991 13 N -0.265 5.265 14 C -0.388 4.388 15 H 0.085 0.915 16 C -0.188 4.188 17 N -0.527 5.527 18 Si 0.725 3.275 19 H -0.212 1.212 20 H -0.214 1.214 21 H -0.202 1.202 22 C 0.010 3.990 23 C -0.233 4.233 24 C -0.261 4.261 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.230 0.770 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.485 -7.112 -4.677 15.111 hybrid contribution 0.869 -0.404 -0.162 0.972 sum -11.616 -7.516 -4.839 14.657 Atomic orbital electron populations 1.23829 0.95953 1.01651 1.01932 1.22973 0.95910 0.98158 0.98886 1.20147 0.96905 0.95401 0.93951 0.90062 1.21668 0.98061 1.03083 0.93233 1.21725 0.99747 1.01369 0.97547 1.21700 1.00135 0.95731 0.99980 1.20596 0.79288 0.89275 0.81670 1.90653 1.62679 1.50612 1.38416 1.46136 1.46964 1.18102 1.26048 1.22279 0.95752 0.81824 1.02727 1.21103 0.95437 0.91046 0.91512 1.43233 1.18127 1.05534 1.59562 1.19087 0.89976 1.01009 1.28712 0.91466 1.25112 0.96920 0.99378 0.97437 1.70031 1.38286 1.12530 1.31807 0.86415 0.82001 0.77099 0.82022 1.21151 1.21399 1.20164 1.21233 0.93393 0.88904 0.95453 1.23041 1.03553 0.94379 1.02352 1.23359 1.04284 1.06767 0.91679 0.88643 0.88707 0.87484 0.89492 0.92682 0.93144 0.93152 0.92860 0.88981 0.89101 0.76964 0.93305 0.91700 0.87689 0.95084 0.93511 0.89504 0.88426 0.90685 0.91180 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.70 14.32 29.02 0.42 -1.29 16 2 C -0.14 -1.32 7.75 -36.03 -0.28 -1.60 16 3 C -0.05 -0.51 1.80 -91.78 -0.17 -0.68 16 4 H 0.08 1.04 7.60 -51.92 -0.39 0.65 16 5 C -0.12 -1.51 5.18 -26.73 -0.14 -1.65 16 6 C -0.15 -1.61 9.73 37.16 0.36 -1.25 16 7 C -0.14 -1.53 5.16 -27.88 -0.14 -1.68 16 8 C 0.51 7.97 7.51 -10.99 -0.08 7.89 16 9 O -0.55 -10.57 13.99 5.55 0.08 -10.50 16 10 N -0.72 -11.58 5.56 -60.30 -0.33 -11.92 16 11 C 0.10 1.98 6.00 -4.04 -0.02 1.95 16 12 C 0.14 2.96 5.45 -4.04 -0.02 2.94 16 13 N -0.55 -13.13 2.78 -165.66 -0.46 -13.59 16 14 C -0.26 -6.79 8.63 -15.06 -0.13 -6.92 16 15 H 0.07 1.78 6.55 -52.48 -0.34 1.44 16 16 C 0.01 0.31 4.96 -17.43 -0.09 0.22 16 17 N -0.88 -24.12 11.33 55.49 0.63 -23.49 16 18 Si 0.90 21.11 29.61 -169.99 -5.03 16.08 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.12 2.51 6.56 -67.93 -0.45 2.07 16 23 C -0.19 -3.83 9.80 -26.69 -0.26 -4.09 16 24 C -0.22 -4.42 10.36 -26.69 -0.28 -4.69 16 25 H 0.10 0.83 7.83 -52.49 -0.41 0.42 16 26 H 0.09 0.69 8.06 -52.48 -0.42 0.26 16 27 H 0.11 0.89 8.06 -52.48 -0.42 0.46 16 28 H 0.09 1.33 5.88 -51.93 -0.31 1.03 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.50 7.38 -51.92 -0.38 0.11 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.40 5.34 8.47 -40.82 -0.35 5.00 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.11 2.55 5.35 -51.93 -0.28 2.28 16 39 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 40 H 0.25 6.73 8.32 -40.82 -0.34 6.39 16 41 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 42 H 0.10 2.08 6.37 -51.93 -0.33 1.75 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -29.18 365.28 -8.74 -37.92 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -7.84 Total: 8.77 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.28 Total: -8.77 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.17 Total: -48.99 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.18 -8.74 -37.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713561355.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.121 kcal (2) G-P(sol) polarization free energy of solvation -29.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds