Wall clock time and date at job start Tue Mar 31 2020 01:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50696 * 120.00639 * 2 1 4 4 H 1.09007 * 109.46530 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47682 * 119.99378 * 3 2 1 6 6 C 1.53002 * 109.47394 * 295.00492 * 5 3 2 7 7 C 1.52997 * 109.47232 * 239.99964 * 3 2 1 8 8 C 1.50709 * 109.47107 * 64.99660 * 7 3 2 9 9 O 1.21281 * 120.00097 * 359.97438 * 8 7 3 10 10 N 1.34778 * 119.99872 * 180.02562 * 8 7 3 11 11 C 1.46496 * 119.99936 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.52733 * 35.07339 * 11 10 8 13 13 C 1.53036 * 109.49908 * 155.16165 * 11 10 8 14 14 C 1.53045 * 109.53873 * 181.31534 * 13 11 10 15 15 C 1.53630 * 109.23759 * 298.50895 * 14 13 11 16 16 N 1.46918 * 108.54220 * 54.85780 * 15 14 13 17 17 C 1.36941 * 120.63232 * 126.36858 * 16 15 14 18 18 H 1.07997 * 120.00413 * 207.33460 * 17 16 15 19 19 C 1.38813 * 119.99819 * 27.32889 * 17 16 15 20 20 N 1.31621 * 119.99717 * 17.96502 * 19 17 16 21 21 Si 1.86800 * 120.00198 * 197.96263 * 19 17 16 22 22 H 1.48505 * 109.46841 * 84.84852 * 21 19 17 23 23 H 1.48500 * 109.46993 * 324.85136 * 21 19 17 24 24 H 1.48503 * 109.47368 * 204.84546 * 21 19 17 25 25 C 1.46931 * 118.74076 * 306.08682 * 16 15 14 26 26 H 1.08000 * 120.00592 * 179.97438 * 1 2 3 27 27 H 1.08008 * 119.99807 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99763 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46706 * 55.00228 * 5 3 2 30 30 H 1.09000 * 109.47644 * 175.00057 * 5 3 2 31 31 H 1.08996 * 109.46956 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.46738 * 299.99716 * 6 5 3 33 33 H 1.09002 * 109.46629 * 59.99459 * 6 5 3 34 34 H 1.08998 * 109.47380 * 304.99915 * 7 3 2 35 35 H 1.08996 * 109.47565 * 184.99273 * 7 3 2 36 36 H 0.96997 * 120.00126 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.46086 * 301.33217 * 13 11 10 38 38 H 1.08999 * 109.46209 * 61.30451 * 13 11 10 39 39 H 1.08997 * 109.49465 * 58.58500 * 14 13 11 40 40 H 1.08993 * 109.49672 * 178.68305 * 14 13 11 41 41 H 1.08998 * 109.73951 * 295.11612 * 15 14 13 42 42 H 1.09000 * 109.65838 * 174.54822 * 15 14 13 43 43 H 0.97013 * 119.99687 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.58767 * 173.65025 * 25 16 15 45 45 H 1.08992 * 109.58544 * 294.07997 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3552 2.1335 -0.0005 5 6 2.9431 1.3861 1.2493 6 6 2.0564 1.4308 2.4953 7 6 2.9432 1.3860 -1.2492 8 6 2.0698 1.4299 -2.4766 9 8 0.8627 1.3989 -2.3634 10 7 2.6302 1.5025 -3.7002 11 6 1.7812 1.5457 -4.8933 12 1 0.8735 2.1079 -4.6743 13 6 2.5399 2.2250 -6.0357 14 6 1.6421 2.3001 -7.2729 15 6 1.2726 0.8767 -7.7174 16 7 0.6704 0.1727 -6.5771 17 6 -0.5551 -0.4268 -6.6954 18 1 -1.1841 -0.5462 -5.8257 19 6 -0.9890 -0.8809 -7.9333 20 7 -0.1228 -1.0659 -8.9070 21 14 -2.8021 -1.2294 -8.2174 22 1 -3.4954 0.0294 -8.5916 23 1 -3.4023 -1.7740 -6.9731 24 1 -2.9499 -2.2205 -9.3134 25 6 1.4109 0.1185 -5.3092 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 3.5906 0.5104 1.2952 30 1 3.5541 2.2877 1.2056 31 1 2.6831 1.4881 3.3853 32 1 1.4090 2.3065 2.4493 33 1 1.4455 0.5291 2.5389 34 1 3.5906 0.5103 -1.2951 35 1 3.5541 2.2876 -1.2057 36 1 3.5957 1.5268 -3.7908 37 1 2.8261 3.2323 -5.7331 38 1 3.4345 1.6485 -6.2709 39 1 0.7357 2.8553 -7.0315 40 1 2.1747 2.8049 -8.0788 41 1 2.1690 0.3479 -8.0414 42 1 0.5565 0.9230 -8.5378 43 1 -0.4261 -1.3829 -9.7722 44 1 0.7860 -0.3356 -4.5402 45 1 2.3182 -0.4708 -5.4408 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713790945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:52 Heat of formation + Delta-G solvation = -17.995306 kcal Electronic energy + Delta-G solvation = -22593.236535 eV Core-core repulsion = 19417.933564 eV Total energy + Delta-G solvation = -3175.302972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.74311 -37.65718 -36.44982 -34.18406 -32.40063 -31.73571 -30.58286 -30.38810 -28.35591 -25.25011 -24.76879 -22.14987 -21.93245 -21.57236 -20.06691 -19.55865 -19.16808 -16.74238 -16.66954 -15.64700 -15.45447 -14.79760 -14.59978 -14.50442 -14.03295 -13.94446 -13.48453 -13.42276 -13.12634 -12.89492 -12.37951 -12.32103 -12.23094 -11.88689 -11.80104 -11.35827 -11.28399 -11.04981 -10.88702 -10.83793 -10.76689 -10.49862 -10.23574 -10.19751 -9.88812 -9.86468 -9.58629 -9.46707 -8.94217 -8.72116 -8.34974 -6.64568 -5.75454 -3.16882 2.57179 3.00226 3.42616 3.47071 3.48842 3.52676 4.54536 4.69432 4.72098 4.85745 5.14545 5.16859 5.33099 5.34289 5.40304 5.43651 5.47872 5.56933 5.63593 5.66212 5.75641 5.78869 5.80447 5.84137 6.04723 6.12846 6.13360 6.21073 6.25637 6.28344 6.56540 6.63688 6.73715 6.75782 6.86428 6.88538 7.05614 7.06893 7.38275 7.66714 7.86268 7.87509 8.47995 8.61640 9.25385 9.88000 10.43692 11.33165 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.004102 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.556469 B = 6823.957094 C = 7839.437173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.155 4.155 3 C -0.043 4.043 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.135 4.135 8 C 0.506 3.494 9 O -0.528 6.528 10 N -0.727 5.727 11 C 0.127 3.873 12 H 0.084 0.916 13 C -0.114 4.114 14 C -0.140 4.140 15 C 0.167 3.833 16 N -0.588 5.588 17 C -0.249 4.249 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.905 5.905 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.279 1.279 24 H -0.291 1.291 25 C 0.144 3.856 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.392 0.608 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.089 0.911 43 H 0.253 0.747 44 H 0.057 0.943 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.793 6.710 16.080 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C -0.062 4.062 4 H 0.098 0.902 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.175 4.175 8 C 0.291 3.709 9 O -0.404 6.404 10 N -0.378 5.378 11 C 0.021 3.979 12 H 0.102 0.898 13 C -0.152 4.152 14 C -0.180 4.180 15 C 0.042 3.958 16 N -0.311 5.311 17 C -0.379 4.379 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.549 5.549 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.204 1.204 24 H -0.218 1.218 25 C 0.016 3.984 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.225 0.775 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 8.849 6.601 15.992 19.433 hybrid contribution -0.313 -0.269 -0.430 0.596 sum 8.535 6.333 15.562 18.845 Atomic orbital electron populations 1.23694 0.95943 1.01332 0.98647 1.22575 0.95982 0.96930 1.01818 1.20133 0.96510 0.97178 0.92372 0.90175 1.21540 0.97856 1.01755 0.94159 1.21759 0.99822 1.02213 0.97042 1.21720 0.98731 1.03888 0.93133 1.20590 0.89298 0.76407 0.84556 1.90733 1.14698 1.48437 1.86503 1.46188 1.09976 1.75409 1.06269 1.21674 0.93500 0.99966 0.82710 0.89807 1.21671 0.98770 0.98935 0.95874 1.22251 0.98481 1.01561 0.95670 1.20930 0.97206 0.86525 0.91174 1.44024 1.18957 1.61061 1.07061 1.19235 0.91758 1.32084 0.94803 0.91561 1.25010 0.97961 0.99005 0.97710 1.70051 1.32124 1.48975 1.03778 0.86293 0.85306 0.77617 0.77522 1.21364 1.20437 1.21780 1.21172 0.95162 0.92218 0.89848 0.89215 0.88698 0.88196 0.91912 0.91999 0.93078 0.92845 0.92333 0.89125 0.89241 0.77469 0.93229 0.92357 0.92456 0.92831 0.96325 0.89281 0.93682 0.92462 0.96714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 13.22 29.02 0.38 -1.75 16 2 C -0.16 -1.90 6.76 -36.03 -0.24 -2.14 16 3 C -0.04 -0.46 1.82 -91.78 -0.17 -0.63 16 4 H 0.08 0.98 7.60 -51.93 -0.39 0.59 16 5 C -0.12 -0.94 5.39 -26.73 -0.14 -1.09 16 6 C -0.15 -1.22 9.73 37.16 0.36 -0.86 16 7 C -0.13 -1.37 5.16 -27.88 -0.14 -1.52 16 8 C 0.51 7.50 7.54 -10.98 -0.08 7.42 16 9 O -0.53 -10.06 13.83 5.56 0.08 -9.98 16 10 N -0.73 -10.39 5.08 -53.69 -0.27 -10.66 16 11 C 0.13 2.31 2.60 -67.81 -0.18 2.14 16 12 H 0.08 1.77 7.58 -51.93 -0.39 1.37 16 13 C -0.11 -1.87 5.35 -26.69 -0.14 -2.01 16 14 C -0.14 -2.65 6.10 -26.38 -0.16 -2.82 16 15 C 0.17 4.02 5.34 -3.49 -0.02 4.00 16 16 N -0.59 -15.25 2.99 -172.05 -0.51 -15.76 16 17 C -0.25 -7.14 9.59 -15.06 -0.14 -7.28 16 18 H 0.07 1.92 7.89 -52.49 -0.41 1.51 16 19 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 20 N -0.90 -26.64 11.20 55.49 0.62 -26.02 16 21 Si 0.90 22.37 29.59 -169.99 -5.03 17.34 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.14 3.20 6.09 -3.71 -0.02 3.18 16 26 H 0.09 1.15 8.06 -52.49 -0.42 0.72 16 27 H 0.09 1.33 7.83 -52.48 -0.41 0.92 16 28 H 0.10 1.15 8.06 -52.49 -0.42 0.72 16 29 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.51 7.38 -51.93 -0.38 0.13 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.39 4.29 8.60 -40.82 -0.35 3.94 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 2.39 6.03 -51.93 -0.31 2.08 16 43 H 0.25 7.19 8.31 -40.81 -0.34 6.85 16 44 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -32.01 356.58 -8.66 -40.67 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -8.13 Total: 2.45 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.79 Total: -3.42 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.17 Total: -52.44 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.01 -8.66 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713790945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.673 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds