Wall clock time and date at job start Tue Mar 31 2020 01:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50696 * 120.00639 * 2 1 4 4 H 1.09007 * 109.46530 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47682 * 119.99378 * 3 2 1 6 6 C 1.53002 * 109.47394 * 295.00492 * 5 3 2 7 7 C 1.52997 * 109.47232 * 239.99964 * 3 2 1 8 8 C 1.50709 * 109.47107 * 64.99660 * 7 3 2 9 9 O 1.21281 * 120.00097 * 359.97438 * 8 7 3 10 10 N 1.34778 * 119.99872 * 180.02562 * 8 7 3 11 11 C 1.46496 * 119.99936 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.52733 * 35.07339 * 11 10 8 13 13 C 1.53036 * 109.49908 * 155.16165 * 11 10 8 14 14 C 1.53045 * 109.53873 * 181.31534 * 13 11 10 15 15 C 1.53630 * 109.23759 * 298.50895 * 14 13 11 16 16 N 1.46918 * 108.54220 * 54.85780 * 15 14 13 17 17 C 1.36941 * 120.63232 * 126.36858 * 16 15 14 18 18 H 1.07997 * 120.00413 * 207.33460 * 17 16 15 19 19 C 1.38813 * 119.99819 * 27.32889 * 17 16 15 20 20 N 1.31621 * 119.99717 * 17.96502 * 19 17 16 21 21 Si 1.86800 * 120.00198 * 197.96263 * 19 17 16 22 22 H 1.48505 * 109.46841 * 84.84852 * 21 19 17 23 23 H 1.48500 * 109.46993 * 324.85136 * 21 19 17 24 24 H 1.48503 * 109.47368 * 204.84546 * 21 19 17 25 25 C 1.46931 * 118.74076 * 306.08682 * 16 15 14 26 26 H 1.08000 * 120.00592 * 179.97438 * 1 2 3 27 27 H 1.08008 * 119.99807 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99763 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46706 * 55.00228 * 5 3 2 30 30 H 1.09000 * 109.47644 * 175.00057 * 5 3 2 31 31 H 1.08996 * 109.46956 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.46738 * 299.99716 * 6 5 3 33 33 H 1.09002 * 109.46629 * 59.99459 * 6 5 3 34 34 H 1.08998 * 109.47380 * 304.99915 * 7 3 2 35 35 H 1.08996 * 109.47565 * 184.99273 * 7 3 2 36 36 H 0.96997 * 120.00126 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.46086 * 301.33217 * 13 11 10 38 38 H 1.08999 * 109.46209 * 61.30451 * 13 11 10 39 39 H 1.08997 * 109.49465 * 58.58500 * 14 13 11 40 40 H 1.08993 * 109.49672 * 178.68305 * 14 13 11 41 41 H 1.08998 * 109.73951 * 295.11612 * 15 14 13 42 42 H 1.09000 * 109.65838 * 174.54822 * 15 14 13 43 43 H 0.97013 * 119.99687 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.58767 * 173.65025 * 25 16 15 45 45 H 1.08992 * 109.58544 * 294.07997 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3552 2.1335 -0.0005 5 6 2.9431 1.3861 1.2493 6 6 2.0564 1.4308 2.4953 7 6 2.9432 1.3860 -1.2492 8 6 2.0698 1.4299 -2.4766 9 8 0.8627 1.3989 -2.3634 10 7 2.6302 1.5025 -3.7002 11 6 1.7812 1.5457 -4.8933 12 1 0.8735 2.1079 -4.6743 13 6 2.5399 2.2250 -6.0357 14 6 1.6421 2.3001 -7.2729 15 6 1.2726 0.8767 -7.7174 16 7 0.6704 0.1727 -6.5771 17 6 -0.5551 -0.4268 -6.6954 18 1 -1.1841 -0.5462 -5.8257 19 6 -0.9890 -0.8809 -7.9333 20 7 -0.1228 -1.0659 -8.9070 21 14 -2.8021 -1.2294 -8.2174 22 1 -3.4954 0.0294 -8.5916 23 1 -3.4023 -1.7740 -6.9731 24 1 -2.9499 -2.2205 -9.3134 25 6 1.4109 0.1185 -5.3092 26 1 -0.5401 -0.9352 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 3.5906 0.5104 1.2952 30 1 3.5541 2.2877 1.2056 31 1 2.6831 1.4881 3.3853 32 1 1.4090 2.3065 2.4493 33 1 1.4455 0.5291 2.5389 34 1 3.5906 0.5103 -1.2951 35 1 3.5541 2.2876 -1.2057 36 1 3.5957 1.5268 -3.7908 37 1 2.8261 3.2323 -5.7331 38 1 3.4345 1.6485 -6.2709 39 1 0.7357 2.8553 -7.0315 40 1 2.1747 2.8049 -8.0788 41 1 2.1690 0.3479 -8.0414 42 1 0.5565 0.9230 -8.5378 43 1 -0.4261 -1.3829 -9.7722 44 1 0.7860 -0.3356 -4.5402 45 1 2.3182 -0.4708 -5.4408 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713790945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:51 Heat of formation + Delta-G solvation = -37.862830 kcal Electronic energy + Delta-G solvation = -22594.098056 eV Core-core repulsion = 19417.933564 eV Total energy + Delta-G solvation = -3176.164492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.98264 -39.14387 -37.53329 -35.81674 -34.11352 -32.59044 -32.34371 -31.62058 -29.80093 -27.27232 -25.72929 -23.88200 -23.44240 -22.47517 -21.34673 -20.93745 -20.35386 -18.73043 -17.82484 -17.17120 -16.65957 -16.46211 -15.87395 -15.62155 -15.51175 -15.21262 -14.92668 -14.65812 -14.55405 -14.18743 -14.03007 -13.83463 -13.40248 -13.04946 -12.98577 -12.84921 -12.76371 -12.52649 -12.14101 -12.12802 -12.00995 -11.97944 -11.76452 -11.64538 -11.55694 -11.33023 -11.29091 -10.75104 -10.62125 -10.03473 -9.94328 -8.71467 -7.92715 -5.37758 1.42319 1.43910 1.52798 1.55814 1.84735 2.29166 2.50538 3.20625 3.68753 3.85406 3.87315 3.94757 3.98520 4.12872 4.26670 4.39133 4.43394 4.47638 4.50622 4.57348 4.65988 4.71783 4.81175 4.87031 4.91319 5.02255 5.04025 5.09139 5.10370 5.12711 5.21076 5.22746 5.28108 5.43281 5.48164 5.50001 5.60824 5.64356 5.75073 5.85618 6.06914 6.34513 6.76128 7.10669 7.48909 7.80970 8.30444 9.12612 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021508 B = 0.004102 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.556469 B = 6823.957094 C = 7839.437173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.146 4.146 3 C -0.044 4.044 4 H 0.059 0.941 5 C -0.108 4.108 6 C -0.153 4.153 7 C -0.123 4.123 8 C 0.498 3.502 9 O -0.577 6.577 10 N -0.714 5.714 11 C 0.144 3.856 12 H 0.052 0.948 13 C -0.104 4.104 14 C -0.130 4.130 15 C 0.171 3.829 16 N -0.608 5.608 17 C -0.269 4.269 18 H 0.051 0.949 19 C -0.043 4.043 20 N -0.929 5.929 21 Si 0.965 3.035 22 H -0.281 1.281 23 H -0.276 1.276 24 H -0.287 1.287 25 C 0.147 3.853 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.415 0.585 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.006 0.994 42 H 0.054 0.946 43 H 0.253 0.747 44 H 0.026 0.974 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.357 7.903 17.042 22.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.164 4.164 3 C -0.063 4.063 4 H 0.077 0.923 5 C -0.145 4.145 6 C -0.211 4.211 7 C -0.163 4.163 8 C 0.286 3.714 9 O -0.456 6.456 10 N -0.367 5.367 11 C 0.037 3.963 12 H 0.070 0.930 13 C -0.141 4.141 14 C -0.170 4.170 15 C 0.046 3.954 16 N -0.332 5.332 17 C -0.399 4.399 18 H 0.069 0.931 19 C -0.239 4.239 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.208 1.208 23 H -0.202 1.202 24 H -0.213 1.213 25 C 0.020 3.980 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.251 0.749 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.024 0.976 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 11.470 7.812 16.978 21.928 hybrid contribution -1.102 -0.683 -0.697 1.472 sum 10.368 7.129 16.280 20.576 Atomic orbital electron populations 1.23662 0.96826 1.00622 1.01283 1.22885 0.95684 0.98398 0.99445 1.20167 0.96640 0.95272 0.94230 0.92279 1.21507 0.97431 1.03347 0.92239 1.21776 0.99958 1.01349 0.97978 1.21762 0.98017 1.06785 0.89709 1.21549 0.89260 0.74852 0.85759 1.90735 1.17253 1.50421 1.87186 1.45977 1.10738 1.75013 1.04978 1.21133 0.93670 0.96507 0.85025 0.92999 1.21599 0.98109 1.01038 0.93397 1.22089 0.99097 0.97784 0.98011 1.20816 0.95393 0.89337 0.89877 1.44256 1.18753 1.61540 1.08655 1.19382 0.93189 1.32648 0.94697 0.93135 1.25705 1.01789 0.99092 0.97344 1.70174 1.33690 1.49628 1.03931 0.85330 0.80549 0.77529 0.77331 1.20783 1.20160 1.21290 1.21203 0.94073 0.95042 0.87655 0.89426 0.90183 0.87094 0.90579 0.90012 0.91536 0.93507 0.93534 0.86620 0.85589 0.74860 0.89512 0.90632 0.93609 0.89779 0.97633 0.92763 0.93806 0.95553 0.96367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.29 13.22 67.79 0.90 -4.39 16 2 C -0.15 -3.51 6.76 25.65 0.17 -3.34 16 3 C -0.04 -0.86 1.82 -11.54 -0.02 -0.88 16 4 H 0.06 1.42 7.60 -2.38 -0.02 1.40 16 5 C -0.11 -1.41 5.39 30.59 0.16 -1.25 16 6 C -0.15 -2.22 9.73 71.98 0.70 -1.52 16 7 C -0.12 -2.08 5.16 29.85 0.15 -1.93 16 8 C 0.50 13.97 7.54 87.66 0.66 14.63 16 9 O -0.58 -22.38 13.83 -3.03 -0.04 -22.42 16 10 N -0.71 -18.69 5.08 -442.16 -2.25 -20.93 16 11 C 0.14 5.10 2.60 45.07 0.12 5.22 16 12 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 13 C -0.10 -3.07 5.35 30.62 0.16 -2.91 16 14 C -0.13 -4.75 6.10 30.82 0.19 -4.56 16 15 C 0.17 8.32 5.34 86.51 0.46 8.79 16 16 N -0.61 -32.45 2.99 -698.26 -2.09 -34.54 16 17 C -0.27 -16.00 9.59 84.03 0.81 -15.19 16 18 H 0.05 3.09 7.89 -2.91 -0.02 3.06 16 19 C -0.04 -2.53 4.90 84.86 0.42 -2.12 16 20 N -0.93 -55.97 11.20 21.65 0.24 -55.73 16 21 Si 0.96 47.05 29.59 68.60 2.03 49.08 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 C 0.15 6.68 6.09 86.36 0.53 7.21 16 26 H 0.09 2.41 8.06 -2.91 -0.02 2.38 16 27 H 0.08 2.45 7.83 -2.91 -0.02 2.43 16 28 H 0.11 2.39 8.06 -2.91 -0.02 2.37 16 29 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.77 7.38 -2.39 -0.02 0.76 16 34 H 0.12 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.41 7.32 8.60 -92.71 -0.80 6.52 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.05 3.00 6.03 -2.39 -0.01 2.98 16 43 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 44 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 45 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -74.00 356.58 3.44 -70.56 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.14 Total: 16.22 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 5.41 Total: -2.24 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.09 Total: -111.20 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.04 Total: -22.42 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -74.00 3.44 -70.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713790945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.697 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds