Wall clock time and date at job start Tue Mar 31 2020 01:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47575 * 2 1 4 4 H 1.09003 * 109.46942 * 54.99782 * 3 2 1 5 5 C 1.53000 * 109.47377 * 174.99910 * 3 2 1 6 6 N 1.46504 * 109.46897 * 174.99983 * 5 3 2 7 7 C 1.34783 * 119.99359 * 180.02562 * 6 5 3 8 8 O 1.21271 * 120.00229 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99388 * 179.97438 * 7 6 5 10 10 C 1.51847 * 108.64829 * 55.90925 * 9 7 6 11 11 C 1.53075 * 110.74326 * 187.60196 * 10 9 7 12 12 C 1.51374 * 108.61284 * 274.26135 * 11 10 9 13 13 C 1.29524 * 120.35881 * 71.88592 * 12 11 10 14 14 C 1.51367 * 120.36154 * 0.02562 * 13 12 11 15 15 C 1.51852 * 108.64739 * 179.97438 * 9 7 6 16 16 N 1.46506 * 109.47123 * 294.99916 * 3 2 1 17 17 C 1.36935 * 119.99722 * 84.99727 * 16 3 2 18 18 H 1.08000 * 120.00139 * 0.02562 * 17 16 3 19 19 C 1.38817 * 119.99953 * 180.02562 * 17 16 3 20 20 N 1.31621 * 119.99656 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00257 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46678 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47081 * 119.99981 * 21 19 17 24 24 H 1.48498 * 109.46979 * 240.00283 * 21 19 17 25 25 H 1.08997 * 109.47006 * 300.00430 * 1 2 3 26 26 H 1.08999 * 109.46898 * 59.99785 * 1 2 3 27 27 H 1.09002 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47006 * 239.99570 * 2 1 3 29 29 H 1.08999 * 109.46898 * 120.00215 * 2 1 3 30 30 H 1.09001 * 109.47118 * 55.00254 * 5 3 2 31 31 H 1.08997 * 109.46967 * 294.99855 * 5 3 2 32 32 H 0.96998 * 120.00265 * 359.97438 * 6 5 3 33 33 H 1.08997 * 108.60555 * 298.01591 * 9 7 6 34 34 H 1.08995 * 109.22433 * 307.92087 * 10 9 7 35 35 H 1.09000 * 109.22334 * 67.27131 * 10 9 7 36 36 H 1.08998 * 109.62653 * 154.51831 * 11 10 9 37 37 H 1.08994 * 109.60221 * 33.99306 * 11 10 9 38 38 H 1.08003 * 119.81809 * 252.15884 * 12 11 10 39 39 H 1.07998 * 119.81554 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.61525 * 47.81560 * 14 13 12 41 41 H 1.09001 * 109.61394 * 168.16738 * 14 13 12 42 42 H 1.09000 * 109.21815 * 52.07774 * 15 9 7 43 43 H 1.08999 * 109.18649 * 292.70562 * 15 9 7 44 44 H 0.96993 * 119.99808 * 265.00076 * 16 3 2 45 45 H 0.96997 * 120.00046 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0631 2.8167 0.0060 7 6 5.3859 3.0627 0.0858 8 8 6.1635 2.1481 0.2573 9 6 5.8985 4.4744 -0.0380 10 6 5.2111 5.3340 1.0082 11 6 5.5535 6.8122 0.8055 12 6 6.8545 7.1091 1.5201 13 6 7.9757 6.6605 1.0518 14 6 7.9994 5.8342 -0.2162 15 6 7.4115 4.4546 0.0895 16 7 1.6526 2.0974 -1.2519 17 6 0.4158 2.6735 -1.3688 18 1 -0.2738 2.6452 -0.5381 19 6 0.0484 3.2937 -2.5552 20 7 0.8890 3.3284 -3.5673 21 14 -1.6385 4.0801 -2.7146 22 1 -2.3878 3.9059 -1.4443 23 1 -1.4841 5.5283 -3.0043 24 1 -2.3848 3.4305 -3.8219 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.9955 0.8310 -0.6659 31 1 3.8499 1.0376 1.0961 32 1 3.4412 3.5482 -0.1316 33 1 5.6364 4.8542 -1.0255 34 1 4.1321 5.2016 0.9290 35 1 5.5383 5.0225 2.0001 36 1 4.7587 7.4323 1.2200 37 1 5.6651 7.0191 -0.2588 38 1 6.8473 7.6945 2.4277 39 1 8.8988 6.8780 1.5685 40 1 7.4015 6.3251 -0.9841 41 1 9.0268 5.7280 -0.5646 42 1 7.8211 3.7271 -0.6113 43 1 7.6817 4.1659 1.1052 44 1 2.2721 2.1230 -1.9978 45 1 0.6322 3.7615 -4.3964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714122833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:58 Heat of formation + Delta-G solvation = -37.556861 kcal Electronic energy + Delta-G solvation = -22595.979291 eV Core-core repulsion = 19419.828067 eV Total energy + Delta-G solvation = -3176.151224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.02013 -37.90714 -36.61611 -33.75656 -32.73174 -32.28965 -31.77668 -29.75516 -28.00174 -25.82166 -24.02647 -23.62115 -22.56285 -21.09123 -20.08050 -19.40925 -18.07288 -17.45787 -16.84816 -16.23388 -15.54480 -15.18520 -14.87071 -14.37633 -14.02112 -13.74914 -13.46184 -13.21947 -13.13942 -13.00979 -12.88927 -12.50689 -12.10290 -12.04885 -11.72684 -11.43227 -11.30957 -10.98800 -10.91494 -10.76647 -10.71315 -10.61592 -10.42749 -10.35296 -10.20058 -10.00634 -9.56622 -9.45808 -9.05668 -8.95748 -8.56740 -7.05290 -5.83835 -3.12884 2.22773 3.00870 3.37359 3.44122 3.46024 3.61996 4.52239 4.57377 4.77963 4.86544 5.01921 5.06613 5.15391 5.37717 5.41460 5.42844 5.48835 5.53869 5.56173 5.68436 5.74056 5.81287 5.92024 5.93306 5.95827 5.97388 6.09461 6.15904 6.19216 6.21660 6.37233 6.42556 6.55147 6.57552 6.60235 6.61069 6.84342 6.93926 7.02865 7.23035 7.64884 7.99633 8.33597 8.63479 9.45663 10.00889 10.36964 11.38155 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.004548 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.477054 B = 6154.903145 C = 7228.740011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.114 3.886 6 N -0.712 5.712 7 C 0.511 3.489 8 O -0.557 6.557 9 C -0.104 4.104 10 C -0.105 4.105 11 C -0.091 4.091 12 C -0.159 4.159 13 C -0.158 4.158 14 C -0.093 4.093 15 C -0.092 4.092 16 N -0.721 5.721 17 C -0.237 4.237 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.410 0.590 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.063 4.689 9.139 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.363 5.363 7 C 0.297 3.703 8 O -0.436 6.436 9 C -0.125 4.125 10 C -0.143 4.143 11 C -0.128 4.128 12 C -0.177 4.177 13 C -0.176 4.176 14 C -0.130 4.130 15 C -0.130 4.130 16 N -0.364 5.364 17 C -0.368 4.368 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.247 0.753 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.413 4.095 9.282 14.538 hybrid contribution -1.108 0.727 -0.479 1.410 sum 9.304 4.822 8.803 13.686 Atomic orbital electron populations 1.21768 0.95742 0.99619 1.03225 1.22067 0.96944 0.98456 1.00002 1.20562 0.90030 0.92753 0.91374 0.92913 1.21650 0.95529 0.82943 1.00926 1.46029 1.07272 1.10621 1.72407 1.20672 0.82423 0.91056 0.76139 1.90641 1.56153 1.46682 1.50095 1.21006 0.96920 0.92892 1.01729 1.21285 1.00360 0.93938 0.98724 1.20825 0.95477 0.95833 1.00690 1.22562 0.94761 1.00417 0.99938 1.22562 0.97863 0.98970 0.98162 1.20857 1.01314 0.95045 0.95817 1.21063 0.92625 0.96095 1.03193 1.42461 1.16760 1.65837 1.11299 1.19256 0.91947 1.27580 0.97971 0.90862 1.24726 0.98020 1.01603 0.96375 1.69671 1.35098 1.49021 1.03958 0.86204 0.84155 0.78883 0.77466 1.20555 1.21929 1.21944 0.94133 0.89688 0.94888 0.92547 0.93882 0.91981 0.92042 0.75339 0.88657 0.90822 0.91428 0.91099 0.90675 0.87727 0.87767 0.90887 0.91377 0.90800 0.91409 0.78106 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.31 5.61 -26.73 -0.15 -2.46 16 3 C 0.16 3.00 2.59 -67.93 -0.18 2.82 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.11 1.95 5.23 -4.04 -0.02 1.93 16 6 N -0.71 -11.77 5.19 -60.29 -0.31 -12.09 16 7 C 0.51 8.42 7.14 -10.98 -0.08 8.34 16 8 O -0.56 -10.86 15.76 5.57 0.09 -10.77 16 9 C -0.10 -1.36 2.06 -92.94 -0.19 -1.55 16 10 C -0.11 -1.22 4.87 -27.28 -0.13 -1.35 16 11 C -0.09 -0.92 5.62 -27.51 -0.15 -1.08 16 12 C -0.16 -1.55 9.34 -35.28 -0.33 -1.88 16 13 C -0.16 -1.53 9.34 -35.29 -0.33 -1.86 16 14 C -0.09 -0.94 5.62 -27.53 -0.15 -1.10 16 15 C -0.09 -1.13 4.30 -27.29 -0.12 -1.25 16 16 N -0.72 -16.24 4.51 -53.42 -0.24 -16.49 16 17 C -0.24 -5.92 7.75 -15.06 -0.12 -6.04 16 18 H 0.07 1.80 7.32 -52.49 -0.38 1.42 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -26.47 13.06 55.49 0.72 -25.74 16 21 Si 0.90 21.25 29.55 -169.99 -5.02 16.23 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 1.78 5.99 -51.93 -0.31 1.47 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.41 6.82 7.15 -40.82 -0.29 6.53 16 33 H 0.10 1.23 7.89 -51.93 -0.41 0.82 16 34 H 0.07 0.87 6.99 -51.93 -0.36 0.51 16 35 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.77 6.68 -51.93 -0.35 0.42 16 38 H 0.10 0.90 8.06 -52.48 -0.42 0.47 16 39 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.07 0.73 6.68 -51.93 -0.35 0.38 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.99 7.77 -51.93 -0.40 0.59 16 43 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 44 H 0.38 9.54 7.80 -40.82 -0.32 9.22 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -28.58 351.16 -8.95 -37.53 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -7.77 Total: 14.15 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.71 Total: -8.12 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.17 Total: -54.31 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.58 -8.95 -37.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714122833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.025 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds