Wall clock time and date at job start Tue Mar 31 2020 01:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47575 * 2 1 4 4 H 1.09003 * 109.46942 * 54.99782 * 3 2 1 5 5 C 1.53000 * 109.47377 * 174.99910 * 3 2 1 6 6 N 1.46504 * 109.46897 * 174.99983 * 5 3 2 7 7 C 1.34783 * 119.99359 * 180.02562 * 6 5 3 8 8 O 1.21271 * 120.00229 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99388 * 179.97438 * 7 6 5 10 10 C 1.51847 * 108.64829 * 55.90925 * 9 7 6 11 11 C 1.53075 * 110.74326 * 187.60196 * 10 9 7 12 12 C 1.51374 * 108.61284 * 274.26135 * 11 10 9 13 13 C 1.29524 * 120.35881 * 71.88592 * 12 11 10 14 14 C 1.51367 * 120.36154 * 0.02562 * 13 12 11 15 15 C 1.51852 * 108.64739 * 179.97438 * 9 7 6 16 16 N 1.46506 * 109.47123 * 294.99916 * 3 2 1 17 17 C 1.36935 * 119.99722 * 84.99727 * 16 3 2 18 18 H 1.08000 * 120.00139 * 0.02562 * 17 16 3 19 19 C 1.38817 * 119.99953 * 180.02562 * 17 16 3 20 20 N 1.31621 * 119.99656 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00257 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46678 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47081 * 119.99981 * 21 19 17 24 24 H 1.48498 * 109.46979 * 240.00283 * 21 19 17 25 25 H 1.08997 * 109.47006 * 300.00430 * 1 2 3 26 26 H 1.08999 * 109.46898 * 59.99785 * 1 2 3 27 27 H 1.09002 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47006 * 239.99570 * 2 1 3 29 29 H 1.08999 * 109.46898 * 120.00215 * 2 1 3 30 30 H 1.09001 * 109.47118 * 55.00254 * 5 3 2 31 31 H 1.08997 * 109.46967 * 294.99855 * 5 3 2 32 32 H 0.96998 * 120.00265 * 359.97438 * 6 5 3 33 33 H 1.08997 * 108.60555 * 298.01591 * 9 7 6 34 34 H 1.08995 * 109.22433 * 307.92087 * 10 9 7 35 35 H 1.09000 * 109.22334 * 67.27131 * 10 9 7 36 36 H 1.08998 * 109.62653 * 154.51831 * 11 10 9 37 37 H 1.08994 * 109.60221 * 33.99306 * 11 10 9 38 38 H 1.08003 * 119.81809 * 252.15884 * 12 11 10 39 39 H 1.07998 * 119.81554 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.61525 * 47.81560 * 14 13 12 41 41 H 1.09001 * 109.61394 * 168.16738 * 14 13 12 42 42 H 1.09000 * 109.21815 * 52.07774 * 15 9 7 43 43 H 1.08999 * 109.18649 * 292.70562 * 15 9 7 44 44 H 0.96993 * 119.99808 * 265.00076 * 16 3 2 45 45 H 0.96997 * 120.00046 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0631 2.8167 0.0060 7 6 5.3859 3.0627 0.0858 8 8 6.1635 2.1481 0.2573 9 6 5.8985 4.4744 -0.0380 10 6 5.2111 5.3340 1.0082 11 6 5.5535 6.8122 0.8055 12 6 6.8545 7.1091 1.5201 13 6 7.9757 6.6605 1.0518 14 6 7.9994 5.8342 -0.2162 15 6 7.4115 4.4546 0.0895 16 7 1.6526 2.0974 -1.2519 17 6 0.4158 2.6735 -1.3688 18 1 -0.2738 2.6452 -0.5381 19 6 0.0484 3.2937 -2.5552 20 7 0.8890 3.3284 -3.5673 21 14 -1.6385 4.0801 -2.7146 22 1 -2.3878 3.9059 -1.4443 23 1 -1.4841 5.5283 -3.0043 24 1 -2.3848 3.4305 -3.8219 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.9955 0.8310 -0.6659 31 1 3.8499 1.0376 1.0961 32 1 3.4412 3.5482 -0.1316 33 1 5.6364 4.8542 -1.0255 34 1 4.1321 5.2016 0.9290 35 1 5.5383 5.0225 2.0001 36 1 4.7587 7.4323 1.2200 37 1 5.6651 7.0191 -0.2588 38 1 6.8473 7.6945 2.4277 39 1 8.8988 6.8780 1.5685 40 1 7.4015 6.3251 -0.9841 41 1 9.0268 5.7280 -0.5646 42 1 7.8211 3.7271 -0.6113 43 1 7.6817 4.1659 1.1052 44 1 2.2721 2.1230 -1.9978 45 1 0.6322 3.7615 -4.3964 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714122833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:57 Heat of formation + Delta-G solvation = -53.898516 kcal Electronic energy + Delta-G solvation = -22596.687918 eV Core-core repulsion = 19419.828067 eV Total energy + Delta-G solvation = -3176.859852 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.25273 -39.00838 -38.12277 -35.27439 -34.22496 -33.52629 -32.67970 -31.48442 -29.51002 -26.88251 -25.49583 -24.83670 -23.97575 -22.23908 -21.57046 -20.68369 -19.23219 -18.84754 -18.18255 -17.28106 -17.02470 -16.63631 -16.17212 -15.77038 -15.40222 -15.20239 -14.73793 -14.60814 -14.41468 -14.19966 -13.98046 -13.83414 -13.52403 -13.10888 -12.97975 -12.80065 -12.76281 -12.62253 -12.34796 -12.13000 -12.06509 -11.86495 -11.74145 -11.62698 -11.49751 -11.33247 -11.20331 -10.93950 -10.70686 -10.00256 -9.84907 -8.96623 -7.86681 -5.13691 1.46900 1.50027 1.52774 1.60131 1.68375 2.31970 2.60865 3.47345 3.65390 3.72590 3.84813 3.91803 3.97519 4.14335 4.24340 4.29009 4.38729 4.47862 4.49233 4.54354 4.56613 4.62585 4.69797 4.78556 4.88192 4.90573 4.94177 5.08301 5.10177 5.14622 5.20857 5.21562 5.23604 5.31025 5.42080 5.50565 5.59741 5.63277 5.72406 5.84450 6.09814 6.33691 6.63307 7.28454 7.41705 8.12970 8.38347 9.36540 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.004548 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.477054 B = 6154.903145 C = 7228.740011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.059 0.941 5 C 0.121 3.879 6 N -0.711 5.711 7 C 0.508 3.492 8 O -0.589 6.589 9 C -0.097 4.097 10 C -0.100 4.100 11 C -0.090 4.090 12 C -0.162 4.162 13 C -0.162 4.162 14 C -0.090 4.090 15 C -0.087 4.087 16 N -0.727 5.727 17 C -0.215 4.215 18 H 0.080 0.920 19 C -0.071 4.071 20 N -0.968 5.968 21 Si 0.958 3.042 22 H -0.266 1.266 23 H -0.298 1.298 24 H -0.303 1.303 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.410 0.590 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.001 5.258 10.886 15.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.077 0.923 5 C -0.003 4.003 6 N -0.361 5.361 7 C 0.295 3.705 8 O -0.470 6.470 9 C -0.118 4.118 10 C -0.137 4.137 11 C -0.127 4.127 12 C -0.180 4.180 13 C -0.180 4.180 14 C -0.127 4.127 15 C -0.125 4.125 16 N -0.368 5.368 17 C -0.347 4.347 18 H 0.098 0.902 19 C -0.263 4.263 20 N -0.619 5.619 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.225 1.225 24 H -0.231 1.231 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.247 0.753 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.204 0.796 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.335 4.654 11.084 15.853 hybrid contribution -1.063 0.453 -0.942 1.491 sum 9.272 5.107 10.142 14.660 Atomic orbital electron populations 1.21695 0.95874 1.00593 1.01826 1.21992 0.96713 0.97425 1.00947 1.20700 0.90848 0.93235 0.89537 0.92289 1.21545 0.94436 0.83227 1.01133 1.46046 1.07491 1.10391 1.72209 1.21280 0.81964 0.92153 0.75062 1.90621 1.56780 1.48000 1.51606 1.21045 0.97490 0.90853 1.02456 1.21242 0.99878 0.94725 0.97893 1.20818 0.96303 0.94683 1.00912 1.22694 0.94360 1.00557 1.00383 1.22688 0.98621 0.98792 0.97927 1.20825 1.01864 0.93623 0.96367 1.21007 0.92012 0.97255 1.02208 1.42575 1.15810 1.66069 1.12303 1.19539 0.92443 1.25203 0.97480 0.90170 1.25347 1.00868 1.03493 0.96627 1.69811 1.36736 1.51083 1.04319 0.85295 0.80991 0.77465 0.77378 1.19045 1.22518 1.23128 0.93147 0.93241 0.92885 0.93720 0.90776 0.93454 0.90536 0.75300 0.88421 0.91135 0.91620 0.90020 0.90762 0.86312 0.86354 0.90720 0.90154 0.92333 0.92269 0.79606 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.18 71.98 0.66 -4.11 16 2 C -0.13 -4.24 5.61 30.59 0.17 -4.07 16 3 C 0.17 5.86 2.59 44.99 0.12 5.97 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 4.04 5.23 86.38 0.45 4.50 16 6 N -0.71 -23.22 5.19 -463.05 -2.40 -25.63 16 7 C 0.51 16.67 7.14 87.66 0.63 17.29 16 8 O -0.59 -23.06 15.76 -3.00 -0.05 -23.11 16 9 C -0.10 -2.50 2.06 -12.30 -0.03 -2.52 16 10 C -0.10 -2.19 4.87 30.24 0.15 -2.04 16 11 C -0.09 -1.67 5.62 30.09 0.17 -1.50 16 12 C -0.16 -2.80 9.34 27.37 0.26 -2.54 16 13 C -0.16 -2.83 9.34 27.37 0.26 -2.57 16 14 C -0.09 -1.69 5.62 30.08 0.17 -1.52 16 15 C -0.09 -2.10 4.30 30.23 0.13 -1.97 16 16 N -0.73 -32.55 4.51 -322.93 -1.46 -34.00 16 17 C -0.21 -10.63 7.75 84.03 0.65 -9.98 16 18 H 0.08 3.82 7.32 -2.91 -0.02 3.80 16 19 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 20 N -0.97 -56.11 13.06 21.65 0.28 -55.83 16 21 Si 0.96 43.84 29.55 68.60 2.03 45.86 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 2.01 5.99 -2.39 -0.01 1.99 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.41 13.47 7.15 -92.71 -0.66 12.81 16 33 H 0.10 2.48 7.89 -2.39 -0.02 2.46 16 34 H 0.07 1.59 6.99 -2.39 -0.02 1.57 16 35 H 0.07 1.47 7.86 -2.39 -0.02 1.45 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.40 6.68 -2.39 -0.02 1.38 16 38 H 0.12 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.12 1.73 8.06 -2.91 -0.02 1.70 16 40 H 0.07 1.39 6.68 -2.39 -0.02 1.37 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.58 7.77 -2.39 -0.02 1.56 16 43 H 0.06 1.52 7.85 -2.39 -0.02 1.50 16 44 H 0.37 18.66 7.80 -92.71 -0.72 17.93 16 45 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -60.78 351.16 2.23 -58.55 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: -0.42 Total: 42.53 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.25 Total: -8.38 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -3.58 Total: -115.46 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -60.78 2.23 -58.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714122833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.651 kcal (2) G-P(sol) polarization free energy of solvation -60.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds